mRNA_M-pyrifera_M_contig118372.3803.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig118372.3803.1
Unique NamemRNA_M-pyrifera_M_contig118372.3803.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig118372.3803.1 vs. uniprot
Match: A0A5A8CC98_CAFRO (HSF_DOMAIN domain-containing protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CC98_CAFRO)

HSP 1 Score: 59.7 bits (143), Expect = 7.860e-9
Identity = 27/51 (52.94%), Postives = 37/51 (72.55%), Query Frame = 1
Query:    1 EFSKTVLPTLCNSDSVCSLVRQLNAYSFKKLDDEPVFISTSDGFVRGKPEL 153
            EF+ ++LP LC S+S+CSLVRQLNAYSF+K+      +   +GFVRG  +L
Sbjct:   78 EFTTSILPLLCKSNSMCSLVRQLNAYSFQKVGKSDEVVFKHEGFVRGNADL 128          
BLAST of mRNA_M-pyrifera_M_contig118372.3803.1 vs. uniprot
Match: A0A7S0K125_CAFRO (Hypothetical protein (Fragment) n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0K125_CAFRO)

HSP 1 Score: 59.7 bits (143), Expect = 7.910e-9
Identity = 27/51 (52.94%), Postives = 37/51 (72.55%), Query Frame = 1
Query:    1 EFSKTVLPTLCNSDSVCSLVRQLNAYSFKKLDDEPVFISTSDGFVRGKPEL 153
            EF+ ++LP LC S+S+CSLVRQLNAYSF+K+      +   +GFVRG  +L
Sbjct:   58 EFTTSILPLLCKSNSMCSLVRQLNAYSFQKVGKSDEVVFKHEGFVRGNADL 108          
BLAST of mRNA_M-pyrifera_M_contig118372.3803.1 vs. uniprot
Match: A0A5A8EGI0_CAFRO (HSF_DOMAIN domain-containing protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EGI0_CAFRO)

HSP 1 Score: 59.7 bits (143), Expect = 8.020e-9
Identity = 27/51 (52.94%), Postives = 37/51 (72.55%), Query Frame = 1
Query:    1 EFSKTVLPTLCNSDSVCSLVRQLNAYSFKKLDDEPVFISTSDGFVRGKPEL 153
            EF+ ++LP LC S+S+CSLVRQLNAYSF+K+      +   +GFVRG  +L
Sbjct:   47 EFTTSILPLLCKSNSMCSLVRQLNAYSFQKVGKSDEVVFKHEGFVRGNADL 97          
BLAST of mRNA_M-pyrifera_M_contig118372.3803.1 vs. uniprot
Match: A0A812XE87_9DINO (HSFB4A protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812XE87_9DINO)

HSP 1 Score: 56.6 bits (135), Expect = 9.500e-8
Identity = 33/64 (51.56%), Postives = 39/64 (60.94%), Query Frame = 1
Query:    1 EFSKTVLPTLCNSDSVCSLVRQLNAYSFKKLDDEPVFISTSDGFVRGKPELLKTVKRRRTLKRR 192
            +FS  VLP LCNS S CS VRQLN YS+ K D++   I   D F +  PE L  + RRR  KRR
Sbjct:   29 DFSTQVLPRLCNSQSFCSFVRQLNGYSWSKADNKRA-IFKHDLFRKDSPENLPLISRRRAAKRR 91          
BLAST of mRNA_M-pyrifera_M_contig118372.3803.1 vs. uniprot
Match: C4M5X4_ENTHI (Heat shock transcription factor, putative n=8 Tax=Entamoeba TaxID=5758 RepID=C4M5X4_ENTHI)

HSP 1 Score: 56.2 bits (134), Expect = 1.260e-7
Identity = 25/59 (42.37%), Postives = 37/59 (62.71%), Query Frame = 1
Query:    1 EFSKTVLPTLCNSDSVCSLVRQLNAYSFKKLDDEPVFISTSDGFVRGKPELLKTVKRRR 177
            EFSK +LP      ++CS VRQLN Y F+KL+ +  F    + F+ G PELL  ++R++
Sbjct:   80 EFSKQILPKFFKHSNICSFVRQLNIYGFRKLETQTGFCFRHESFIAGHPELLPNIQRKK 138          
BLAST of mRNA_M-pyrifera_M_contig118372.3803.1 vs. uniprot
Match: L7FJQ6_ENTIV (Heat stress transcription factor A-4C, putative n=1 Tax=Entamoeba invadens IP1 TaxID=370355 RepID=L7FJQ6_ENTIV)

HSP 1 Score: 55.1 bits (131), Expect = 3.130e-7
Identity = 26/59 (44.07%), Postives = 35/59 (59.32%), Query Frame = 1
Query:    1 EFSKTVLPTLCNSDSVCSLVRQLNAYSFKKLDDEPVFISTSDGFVRGKPELLKTVKRRR 177
            EFSK +LP      ++CS VRQLN Y FKKL+    F    D F+   PELL  ++R++
Sbjct:   79 EFSKQILPQFFKHSNICSFVRQLNIYGFKKLETPTGFCFRHDSFIADHPELLPNIQRKK 137          
BLAST of mRNA_M-pyrifera_M_contig118372.3803.1 vs. uniprot
Match: A0A0A1U586_ENTIV (HSF type DNA-binding domain containing protein (Fragment) n=1 Tax=Entamoeba invadens IP1 TaxID=370355 RepID=A0A0A1U586_ENTIV)

HSP 1 Score: 53.9 bits (128), Expect = 7.710e-7
Identity = 24/59 (40.68%), Postives = 36/59 (61.02%), Query Frame = 1
Query:    1 EFSKTVLPTLCNSDSVCSLVRQLNAYSFKKLDDEPVFISTSDGFVRGKPELLKTVKRRR 177
            EFSK +LP      ++CS VRQLN Y F+KL+ +  F    + F+   PELL  ++R++
Sbjct:   80 EFSKVILPKFFKHSNICSFVRQLNIYGFRKLETQSGFCFRHESFIADHPELLPNIQRKK 138          
BLAST of mRNA_M-pyrifera_M_contig118372.3803.1 vs. uniprot
Match: A0A8J5SC39_ZIZPA (HSF_DOMAIN domain-containing protein n=1 Tax=Zizania palustris TaxID=103762 RepID=A0A8J5SC39_ZIZPA)

HSP 1 Score: 53.1 bits (126), Expect = 1.590e-6
Identity = 29/59 (49.15%), Postives = 38/59 (64.41%), Query Frame = 1
Query:    4 FSKTVLPTLCNSDSVCSLVRQLNAYSFKKLDDEPVFISTSDGFVRGKPELLKTVKRRRT 180
            F+  VLP      +  S VRQLN Y F+K+D E  +   ++GF+RGK ELLK +KRRRT
Sbjct:   84 FAMVVLPRYFKHSNFSSFVRQLNTYGFRKVDPER-WEFANEGFLRGKKELLKKIKRRRT 141          
BLAST of mRNA_M-pyrifera_M_contig118372.3803.1 vs. uniprot
Match: A0A830D4N7_9LAMI (Heat stress transcription factor a-4a n=1 Tax=Phtheirospermum japonicum TaxID=374723 RepID=A0A830D4N7_9LAMI)

HSP 1 Score: 52.4 bits (124), Expect = 2.740e-6
Identity = 26/59 (44.07%), Postives = 39/59 (66.10%), Query Frame = 1
Query:    1 EFSKTVLPTLCNSDSVCSLVRQLNAYSFKKLDDEPVFISTSDGFVRGKPELLKTVKRRR 177
            EFS+ +LP     ++  S +RQLN Y F+K+D E  +   ++GFVRG+P LLK + RR+
Sbjct:   48 EFSRDLLPRFFKHNNFSSFIRQLNTYGFRKVDPEQ-WEFANEGFVRGQPNLLKNIHRRK 105          
BLAST of mRNA_M-pyrifera_M_contig118372.3803.1 vs. uniprot
Match: A0A2T7C148_9POAL (HSF_DOMAIN domain-containing protein n=4 Tax=Panicum TaxID=4539 RepID=A0A2T7C148_9POAL)

HSP 1 Score: 52.0 bits (123), Expect = 4.110e-6
Identity = 27/58 (46.55%), Postives = 38/58 (65.52%), Query Frame = 1
Query:    4 FSKTVLPTLCNSDSVCSLVRQLNAYSFKKLDDEPVFISTSDGFVRGKPELLKTVKRRR 177
            F+  +LP      +  S VRQLN Y F+K+D +  +   ++GF+RGK ELLKT+KRRR
Sbjct:   88 FANVILPRYFKHSNFSSFVRQLNTYGFRKVDPDR-WEFANEGFLRGKRELLKTIKRRR 144          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig118372.3803.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8CC98_CAFRO7.860e-952.94HSF_DOMAIN domain-containing protein n=1 Tax=Cafet... [more]
A0A7S0K125_CAFRO7.910e-952.94Hypothetical protein (Fragment) n=1 Tax=Cafeteria ... [more]
A0A5A8EGI0_CAFRO8.020e-952.94HSF_DOMAIN domain-containing protein n=2 Tax=Cafet... [more]
A0A812XE87_9DINO9.500e-851.56HSFB4A protein n=1 Tax=Symbiodinium sp. KB8 TaxID=... [more]
C4M5X4_ENTHI1.260e-742.37Heat shock transcription factor, putative n=8 Tax=... [more]
L7FJQ6_ENTIV3.130e-744.07Heat stress transcription factor A-4C, putative n=... [more]
A0A0A1U586_ENTIV7.710e-740.68HSF type DNA-binding domain containing protein (Fr... [more]
A0A8J5SC39_ZIZPA1.590e-649.15HSF_DOMAIN domain-containing protein n=1 Tax=Zizan... [more]
A0A830D4N7_9LAMI2.740e-644.07Heat stress transcription factor a-4a n=1 Tax=Phth... [more]
A0A2T7C148_9POAL4.110e-646.55HSF_DOMAIN domain-containing protein n=4 Tax=Panic... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig118372contigM-pyrifera_M_contig118372:286..483 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size198
Cds size198
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815703.2966974-CDS-M-pyrifera_M_contig118372:285..4831622815703.2966974-CDS-M-pyrifera_M_contig118372:285..483Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118372 286..483 +
1692277529.7160616-CDS-M-pyrifera_M_contig118372:285..4831692277529.7160616-CDS-M-pyrifera_M_contig118372:285..483Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118372 286..483 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig118372.3803.1prot_M-pyrifera_M_contig118372.3803.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig118372 286..483 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig118372.3803.1

>prot_M-pyrifera_M_contig118372.3803.1 ID=prot_M-pyrifera_M_contig118372.3803.1|Name=mRNA_M-pyrifera_M_contig118372.3803.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=66bp
EFSKTVLPTLCNSDSVCSLVRQLNAYSFKKLDDEPVFISTSDGFVRGKPE
LLKTVKRRRTLKRRAK
back to top

mRNA from alignment at M-pyrifera_M_contig118372:286..483+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig118372.3803.1 ID=mRNA_M-pyrifera_M_contig118372.3803.1|Name=mRNA_M-pyrifera_M_contig118372.3803.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=198bp|location=Sequence derived from alignment at M-pyrifera_M_contig118372:286..483+ (Macrocystis pyrifera P11B4 male)
GAGTTTTCAAAGACTGTGTTGCCAACACTGTGCAACAGCGATTCTGTCTG TTCTCTGGTCCGCCAATTGAACGCCTACTCGTTCAAGAAGTTGGATGACG AGCCTGTCTTTATTTCTACGAGCGACGGGTTCGTGAGAGGGAAGCCTGAG TTGCTCAAGACTGTGAAACGACGAAGGACGCTGAAGCGCAGGGCGAAG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig118372:286..483+

>mRNA_M-pyrifera_M_contig118372.3803.1 ID=mRNA_M-pyrifera_M_contig118372.3803.1|Name=mRNA_M-pyrifera_M_contig118372.3803.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=396bp|location=Sequence derived from alignment at M-pyrifera_M_contig118372:286..483+ (Macrocystis pyrifera P11B4 male)
GAGTTTTCAAAGACTGTGTTGCCAACACTGTGCAACAGCGATTCTGTCTG
TTCTCTGGTCCGCCAATTGAACGCCTACTCGTTCAAGAAGTTGGATGACG
AGCCTGTCTTTATTTCTACGAGCGACGGGTTCGTGAGAGGGAAGCCTGAG
TTGCTCAAGACTGTGAAACGACGAAGGACGCTGAAGCGCAGGGCGAAGGA
GTTTTCAAAGACTGTGTTGCCAACACTGTGCAACAGCGATTCTGTCTGTT
CTCTGGTCCGCCAATTGAACGCCTACTCGTTCAAGAAGTTGGATGACGAG
CCTGTCTTTATTTCTACGAGCGACGGGTTCGTGAGAGGGAAGCCTGAGTT
GCTCAAGACTGTGAAACGACGAAGGACGCTGAAGCGCAGGGCGAAG
back to top