mRNA_M-pyrifera_M_contig118354.3796.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig118354.3796.1
Unique NamemRNA_M-pyrifera_M_contig118354.3796.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig118354.3796.1 vs. uniprot
Match: A0A7S3M211_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M211_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 5.580e-7
Identity = 30/79 (37.97%), Postives = 47/79 (59.49%), Query Frame = 1 
Query:   58 RMLWIPAVFFAVRVWGSIRVVLGAA---GSDAVEFAPLVYLQALLDPSQGLINSFIFVLAHSTARRGIWDAAVALYRRL 285
            ++  +P V F +RVW S+R++L  A     +   F  +  +QAL DPSQG+ N+ +FVLA    R  ++DA   L+RR+
Sbjct:  324 KLAAVPIVLFLIRVWSSLRIILHFAHPHSDNGDSFFEV--MQALFDPSQGIFNALLFVLASPEDRHSMFDAFDLLFRRI 400
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig118354.3796.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3M211_9STRA5.580e-737.97Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig118354contigM-pyrifera_M_contig118354:36..347 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size312
Cds size312
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815703.0041163-CDS-M-pyrifera_M_contig118354:35..3471622815703.0041163-CDS-M-pyrifera_M_contig118354:35..347Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118354 36..347 -
1692277529.6206834-CDS-M-pyrifera_M_contig118354:35..3471692277529.6206834-CDS-M-pyrifera_M_contig118354:35..347Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118354 36..347 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig118354.3796.1prot_M-pyrifera_M_contig118354.3796.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig118354 36..347 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig118354.3796.1

>prot_M-pyrifera_M_contig118354.3796.1 ID=prot_M-pyrifera_M_contig118354.3796.1|Name=mRNA_M-pyrifera_M_contig118354.3796.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=104bp
ASPAPFPDVPVSSPPVAVRRMLWIPAVFFAVRVWGSIRVVLGAAGSDAVE
FAPLVYLQALLDPSQGLINSFIFVLAHSTARRGIWDAAVALYRRLTLPCS
RSDN
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mRNA from alignment at M-pyrifera_M_contig118354:36..347-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig118354.3796.1 ID=mRNA_M-pyrifera_M_contig118354.3796.1|Name=mRNA_M-pyrifera_M_contig118354.3796.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=312bp|location=Sequence derived from alignment at M-pyrifera_M_contig118354:36..347- (Macrocystis pyrifera P11B4 male)
GCGTCTCCCGCGCCTTTTCCGGACGTGCCAGTGTCGTCTCCCCCTGTCGC
TGTCCGCCGCATGCTGTGGATTCCCGCCGTCTTCTTCGCCGTGCGTGTGT
GGGGCTCTATCCGCGTCGTGCTCGGCGCGGCGGGGTCGGATGCGGTCGAG
TTCGCGCCGCTCGTCTACCTGCAAGCGTTGCTGGATCCATCGCAGGGCCT
CATCAACTCGTTCATCTTCGTGCTGGCGCACTCTACAGCGCGTCGCGGCA
TTTGGGACGCGGCGGTTGCGCTGTATCGGAGACTGACTCTGCCGTGTAGC
AGGAGTGATAAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig118354:36..347-

>mRNA_M-pyrifera_M_contig118354.3796.1 ID=mRNA_M-pyrifera_M_contig118354.3796.1|Name=mRNA_M-pyrifera_M_contig118354.3796.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=624bp|location=Sequence derived from alignment at M-pyrifera_M_contig118354:36..347- (Macrocystis pyrifera P11B4 male)
GCGTCTCCCGCGCCTTTTCCGGACGTGCCAGTGTCGTCTCCCCCTGTCGC
TGTCCGCCGCATGCTGTGGATTCCCGCCGTCTTCTTCGCCGTGCGTGTGT
GGGGCTCTATCCGCGTCGTGCTCGGCGCGGCGGGGTCGGATGCGGTCGAG
TTCGCGCCGCTCGTCTACCTGCAAGCGTTGCTGGATCCATCGCAGGGCCT
CATCAACTCGTTCATCTTCGTGCTGGCGCACTCTACAGCGCGTCGCGGCA
TTTGGGACGCGGCGGTTGCGCTGTATCGGAGACTGACTCTGCCGTGTAGC
AGGAGTGATAACGCGTCTCCCGCGCCTTTTCCGGACGTGCCAGTGTCGTC
TCCCCCTGTCGCTGTCCGCCGCATGCTGTGGATTCCCGCCGTCTTCTTCG
CCGTGCGTGTGTGGGGCTCTATCCGCGTCGTGCTCGGCGCGGCGGGGTCG
GATGCGGTCGAGTTCGCGCCGCTCGTCTACCTGCAAGCGTTGCTGGATCC
ATCGCAGGGCCTCATCAACTCGTTCATCTTCGTGCTGGCGCACTCTACAG
CGCGTCGCGGCATTTGGGACGCGGCGGTTGCGCTGTATCGGAGACTGACT
CTGCCGTGTAGCAGGAGTGATAAC
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