mRNA_M-pyrifera_M_contig118304.3785.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig118304.3785.1
Unique NamemRNA_M-pyrifera_M_contig118304.3785.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig118304.3785.1 vs. uniprot
Match: A0A7R9UEZ9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UEZ9_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 9.530e-18
Identity = 36/49 (73.47%), Postives = 40/49 (81.63%), Query Frame = 1 
Query:    4 SRTVYVGNLDWGVSWQDLKDHMRSAGEVVRADVLSEPSGRSKGCGCVSF 150
            +R VYVGNL WGV+WQDLKDHMR  GEVV ADVL+ P GRSKGCG V +
Sbjct:  188 ARRVYVGNLPWGVAWQDLKDHMRQCGEVVHADVLTGPDGRSKGCGIVEY 236
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BLAST of mRNA_M-pyrifera_M_contig118304.3785.1 vs. uniprot
Match: A0A6H5JB58_9PHAE (RRM domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB58_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 1.260e-17
Identity = 34/46 (73.91%), Postives = 38/46 (82.61%), Query Frame = 1 
Query:   13 VYVGNLDWGVSWQDLKDHMRSAGEVVRADVLSEPSGRSKGCGCVSF 150
            VYVGNL W   WQDLKDHMR+AGEVVRADV+ + SGRSKGCG V +
Sbjct:   51 VYVGNLSWETEWQDLKDHMRTAGEVVRADVMRDASGRSKGCGIVEY 96
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BLAST of mRNA_M-pyrifera_M_contig118304.3785.1 vs. uniprot
Match: A0A7S3HGW7_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HGW7_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 1.330e-17
Identity = 37/50 (74.00%), Postives = 43/50 (86.00%), Query Frame = 1 
Query:    4 SRTVYVGNLDWGVSWQDLKDHMRSAGEVVR-ADVLSEPSGRSKGCGCVSF 150
            +R+VYVGNL W V+WQDLKDHMRS G +V  ADVL+EPSGRSKGCG V+F
Sbjct:   33 NRSVYVGNLSWDVTWQDLKDHMRSLGGLVEHADVLTEPSGRSKGCGLVTF 82
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BLAST of mRNA_M-pyrifera_M_contig118304.3785.1 vs. uniprot
Match: A0A7S1DBL6_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1DBL6_CYCTE)

HSP 1 Score: 82.0 bits (201), Expect = 3.440e-17
Identity = 35/49 (71.43%), Postives = 41/49 (83.67%), Query Frame = 1 
Query:    4 SRTVYVGNLDWGVSWQDLKDHMRSAGEVVRADVLSEPSGRSKGCGCVSF 150
            SR VYVGNL W V+WQDLKDHMR AGEVV A+V++E +GRSKGCG V +
Sbjct:   60 SRRVYVGNLSWDVAWQDLKDHMRDAGEVVHAEVITEANGRSKGCGIVEY 108
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BLAST of mRNA_M-pyrifera_M_contig118304.3785.1 vs. uniprot
Match: A0A7S4KDH2_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4KDH2_GUITH)

HSP 1 Score: 77.8 bits (190), Expect = 4.210e-17
Identity = 33/48 (68.75%), Postives = 37/48 (77.08%), Query Frame = 1 
Query:    7 RTVYVGNLDWGVSWQDLKDHMRSAGEVVRADVLSEPSGRSKGCGCVSF 150
            R VYVGNL W   WQDLKDHMR+AG V+ ADV++ P GRSKGCG V F
Sbjct:   55 RRVYVGNLSWECKWQDLKDHMRTAGNVLHADVMTGPDGRSKGCGLVEF 102
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BLAST of mRNA_M-pyrifera_M_contig118304.3785.1 vs. uniprot
Match: A0A448YVD1_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YVD1_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 5.260e-17
Identity = 36/49 (73.47%), Postives = 40/49 (81.63%), Query Frame = 1 
Query:    4 SRTVYVGNLDWGVSWQDLKDHMRSAGEVVRADVLSEPSGRSKGCGCVSF 150
            SR VYVGNL W V+W DLKDHM+ AGEVVRADV+ E +GRSKGCG V F
Sbjct:  191 SRRVYVGNLSWDVAWADLKDHMKQAGEVVRADVICEHNGRSKGCGIVEF 239
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BLAST of mRNA_M-pyrifera_M_contig118304.3785.1 vs. uniprot
Match: L1ITL9_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1ITL9_GUITC)

HSP 1 Score: 77.8 bits (190), Expect = 1.260e-16
Identity = 33/48 (68.75%), Postives = 37/48 (77.08%), Query Frame = 1 
Query:    7 RTVYVGNLDWGVSWQDLKDHMRSAGEVVRADVLSEPSGRSKGCGCVSF 150
            R VYVGNL W   WQDLKDHMR+AG V+ ADV++ P GRSKGCG V F
Sbjct:  103 RRVYVGNLSWECKWQDLKDHMRTAGNVLHADVMTGPDGRSKGCGLVEF 150
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BLAST of mRNA_M-pyrifera_M_contig118304.3785.1 vs. uniprot
Match: A0A7S0JJY0_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0JJY0_9EUKA)

HSP 1 Score: 77.0 bits (188), Expect = 1.700e-16
Identity = 35/48 (72.92%), Postives = 40/48 (83.33%), Query Frame = 1 
Query:   10 TVYVGNLDWGVSWQDLKDHMRSAGEVVRADVLSEP-SGRSKGCGCVSF 150
            +VYVGNL W VSWQDLKDH ++AGEVV ADV+ EP +GRSKGCG V F
Sbjct:   54 SVYVGNLSWEVSWQDLKDHFKAAGEVVHADVMMEPGTGRSKGCGLVVF 101
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BLAST of mRNA_M-pyrifera_M_contig118304.3785.1 vs. uniprot
Match: A0A6T8LAH9_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6T8LAH9_HEMAN)

HSP 1 Score: 79.3 bits (194), Expect = 1.770e-16
Identity = 34/50 (68.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:    1 SSRTVYVGNLDWGVSWQDLKDHMRSAGEVVRADVLSEPSGRSKGCGCVSF 150
            S + VYVGNL W   WQDLKDHMRS GEV+ ADVL+ P GRSKGCG V +
Sbjct:  206 SGKRVYVGNLSWECQWQDLKDHMRSVGEVLHADVLTGPDGRSKGCGLVEY 255
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BLAST of mRNA_M-pyrifera_M_contig118304.3785.1 vs. uniprot
Match: A0A7S3MDE3_9STRA (Hypothetical protein (Fragment) n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MDE3_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 1.920e-16
Identity = 34/50 (68.00%), Postives = 40/50 (80.00%), Query Frame = 1 
Query:    1 SSRTVYVGNLDWGVSWQDLKDHMRSAGEVVRADVLSEPSGRSKGCGCVSF 150
            S   VYVGNL + VSWQDLKDHM+ AG V+RADV+++ SGRSKGCG V F
Sbjct:   43 SGSRVYVGNLKFEVSWQDLKDHMKQAGRVLRADVMTDASGRSKGCGIVEF 92
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig118304.3785.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7R9UEZ9_9STRA9.530e-1873.47Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A6H5JB58_9PHAE1.260e-1773.91RRM domain-containing protein (Fragment) n=1 Tax=E... [more]
A0A7S3HGW7_9STRA1.330e-1774.00Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S1DBL6_CYCTE3.440e-1771.43Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7S4KDH2_GUITH4.210e-1768.75Hypothetical protein n=1 Tax=Guillardia theta TaxI... [more]
A0A448YVD1_9STRA5.260e-1773.47Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
L1ITL9_GUITC1.260e-1668.75Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
A0A7S0JJY0_9EUKA1.700e-1672.92Hypothetical protein (Fragment) n=1 Tax=Calcidiscu... [more]
A0A6T8LAH9_HEMAN1.770e-1668.00Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
A0A7S3MDE3_9STRA1.920e-1668.00Hypothetical protein (Fragment) n=2 Tax=Spumella e... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig118304contigM-pyrifera_M_contig118304:34..183 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score81.3
Seed ortholog evalue1.4e-13
Seed eggNOG ortholog115417.EPrPW00000020111
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.RNA binding protein. Source PGD
EggNOG OGs1MCB1@121069,KOG0118@1,KOG0118@2759
COG Functional cat.S
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
Exons1
Model size150
Cds size150
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815702.5144591-CDS-M-pyrifera_M_contig118304:33..1831622815702.5144591-CDS-M-pyrifera_M_contig118304:33..183Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118304 34..183 -
1692277529.412381-CDS-M-pyrifera_M_contig118304:33..1831692277529.412381-CDS-M-pyrifera_M_contig118304:33..183Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118304 34..183 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig118304.3785.1prot_M-pyrifera_M_contig118304.3785.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig118304 34..183 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig118304.3785.1

>prot_M-pyrifera_M_contig118304.3785.1 ID=prot_M-pyrifera_M_contig118304.3785.1|Name=mRNA_M-pyrifera_M_contig118304.3785.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=50bp
SSRTVYVGNLDWGVSWQDLKDHMRSAGEVVRADVLSEPSGRSKGCGCVSF
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mRNA from alignment at M-pyrifera_M_contig118304:34..183-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig118304.3785.1 ID=mRNA_M-pyrifera_M_contig118304.3785.1|Name=mRNA_M-pyrifera_M_contig118304.3785.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=150bp|location=Sequence derived from alignment at M-pyrifera_M_contig118304:34..183- (Macrocystis pyrifera P11B4 male)
TCGTCGCGCACCGTGTACGTGGGCAACCTGGACTGGGGCGTGTCGTGGCA
GGACCTGAAGGACCACATGCGCTCGGCCGGCGAAGTGGTTCGCGCGGACG
TCCTGTCCGAGCCTTCTGGCCGCAGCAAGGGATGCGGGTGCGTGTCCTTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig118304:34..183-

>mRNA_M-pyrifera_M_contig118304.3785.1 ID=mRNA_M-pyrifera_M_contig118304.3785.1|Name=mRNA_M-pyrifera_M_contig118304.3785.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=300bp|location=Sequence derived from alignment at M-pyrifera_M_contig118304:34..183- (Macrocystis pyrifera P11B4 male)
TCGTCGCGCACCGTGTACGTGGGCAACCTGGACTGGGGCGTGTCGTGGCA
GGACCTGAAGGACCACATGCGCTCGGCCGGCGAAGTGGTTCGCGCGGACG
TCCTGTCCGAGCCTTCTGGCCGCAGCAAGGGATGCGGGTGCGTGTCCTTC
TCGTCGCGCACCGTGTACGTGGGCAACCTGGACTGGGGCGTGTCGTGGCA
GGACCTGAAGGACCACATGCGCTCGGCCGGCGAAGTGGTTCGCGCGGACG
TCCTGTCCGAGCCTTCTGGCCGCAGCAAGGGATGCGGGTGCGTGTCCTTC
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