mRNA_M-pyrifera_M_contig1183.3784.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig1183.3784.1
Unique NamemRNA_M-pyrifera_M_contig1183.3784.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig1183.3784.1 vs. uniprot
Match: D7G901_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G901_ECTSI)

HSP 1 Score: 98.2 bits (243), Expect = 1.940e-25
Identity = 43/65 (66.15%), Postives = 47/65 (72.31%), Query Frame = 1 
Query:    1 MPDSPPPRCENCKPGEATEERETAVADSGCQETYGFVVSCMEAHRGNVADCREEWQAFRACHSSS 195
            M DS PP CENCKPG+AT+ERE A+    CQ TY  V +CMEAHRGNVADCR EW  FR CH  S
Sbjct:    1 MSDSAPPVCENCKPGKATDEREAAIEKMDCQATYDVVAACMEAHRGNVADCRTEWNDFRECHKES 65
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BLAST of mRNA_M-pyrifera_M_contig1183.3784.1 vs. uniprot
Match: A0A1V9Z9R7_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z9R7_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 1.270e-15
Identity = 32/61 (52.46%), Postives = 40/61 (65.57%), Query Frame = 1 
Query:   19 PRCENCKPGEATEERETAVADSGCQETYGFVVSCMEAHRGNVADCREEWQAFRACHSSSAR 201
            P C  CKPG  T    +AVA +GCQE+Y  V  CM+ H+G V+ C EEW+AFRACH   A+
Sbjct:    5 PECLTCKPGNPTHHA-SAVAATGCQESYAKVDECMKLHKGRVSACVEEWEAFRACHKKEAK 64
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BLAST of mRNA_M-pyrifera_M_contig1183.3784.1 vs. uniprot
Match: A0A2D4BEA7_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BEA7_PYTIN)

HSP 1 Score: 65.1 bits (157), Expect = 2.710e-12
Identity = 27/63 (42.86%), Postives = 42/63 (66.67%), Query Frame = 1 
Query:   25 CENCKPGEATEERETAVADSGCQETYGFVVSCMEAHRGNVADCREEWQAFRACHSSSARKKSQ 213
            C  CKPG+AT   ++AV ++GC+++Y  V +CM+ H G V+ C +EW AFR CH  +   ++Q
Sbjct:    6 CLTCKPGDAT-YHQSAVENTGCEDSYQRVDACMKKHNGRVSACTDEWTAFRKCHEQAKALQAQ 67
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BLAST of mRNA_M-pyrifera_M_contig1183.3784.1 vs. uniprot
Match: W2HZY6_PHYPR (Uncharacterized protein n=7 Tax=Phytophthora TaxID=4783 RepID=W2HZY6_PHYPR)

HSP 1 Score: 62.4 bits (150), Expect = 4.020e-11
Identity = 27/60 (45.00%), Postives = 39/60 (65.00%), Query Frame = 1 
Query:    7 DSPPPRCENCKPGEATEERETAVADSGCQETYGFVVSCMEAHRGNVADCREEWQAFRACH 186
            D P   C  CKPG+ T   ++AV ++GC+E+Y  V +CM+ + G V+ C EEW+ FR CH
Sbjct:   16 DMPTKECLTCKPGDDT-HHQSAVENTGCEESYLRVDACMKLNNGRVSACTEEWEKFRQCH 74
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BLAST of mRNA_M-pyrifera_M_contig1183.3784.1 vs. uniprot
Match: A0A2D4BEL4_PYTIN (Isochorismatase domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BEL4_PYTIN)

HSP 1 Score: 65.1 bits (157), Expect = 1.370e-10
Identity = 27/63 (42.86%), Postives = 42/63 (66.67%), Query Frame = 1 
Query:   25 CENCKPGEATEERETAVADSGCQETYGFVVSCMEAHRGNVADCREEWQAFRACHSSSARKKSQ 213
            C  CKPG+AT   ++AV ++GC+++Y  V +CM+ H G V+ C +EW AFR CH  +   ++Q
Sbjct:  373 CLTCKPGDAT-YHQSAVENTGCEDSYQRVDACMKKHNGRVSACTDEWTAFRKCHEQTKALQAQ 434
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BLAST of mRNA_M-pyrifera_M_contig1183.3784.1 vs. uniprot
Match: W2PHM5_PHYPN (Uncharacterized protein n=3 Tax=Phytophthora parasitica TaxID=4792 RepID=W2PHM5_PHYPN)

HSP 1 Score: 60.8 bits (146), Expect = 7.780e-10
Identity = 26/58 (44.83%), Postives = 38/58 (65.52%), Query Frame = 1 
Query:   13 PPPRCENCKPGEATEERETAVADSGCQETYGFVVSCMEAHRGNVADCREEWQAFRACH 186
            P   C  CKPG+ T   ++AV ++GC+E+Y  V +CM+ + G V+ C EEW+ FR CH
Sbjct:    2 PTKECLTCKPGDDT-HHQSAVENTGCEESYLRVDACMKLNNGRVSACTEEWEKFRQCH 58
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig1183.3784.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7G901_ECTSI1.940e-2566.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A1V9Z9R7_9STRA1.270e-1552.46Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A2D4BEA7_PYTIN2.710e-1242.86Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
W2HZY6_PHYPR4.020e-1145.00Uncharacterized protein n=7 Tax=Phytophthora TaxID... [more]
A0A2D4BEL4_PYTIN1.370e-1042.86Isochorismatase domain-containing protein n=1 Tax=... [more]
W2PHM5_PHYPN7.780e-1044.83Uncharacterized protein n=3 Tax=Phytophthora paras... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig1183contigM-pyrifera_M_contig1183:11725..11946 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score99.8
Seed ortholog evalue5.8e-19
Seed eggNOG ortholog2880.D7G901
Hectar predicted targeting categoryother localisation
EggNOG OGs2CKQX@1,2SG1M@2759
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-15_002440.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size222
Cds size222
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815702.4795449-CDS-M-pyrifera_M_contig1183:11724..119461622815702.4795449-CDS-M-pyrifera_M_contig1183:11724..11946Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1183 11725..11946 +
1692277529.4028208-CDS-M-pyrifera_M_contig1183:11724..119461692277529.4028208-CDS-M-pyrifera_M_contig1183:11724..11946Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1183 11725..11946 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig1183.3784.1prot_M-pyrifera_M_contig1183.3784.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig1183 11725..11946 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig1183.3784.1

>prot_M-pyrifera_M_contig1183.3784.1 ID=prot_M-pyrifera_M_contig1183.3784.1|Name=mRNA_M-pyrifera_M_contig1183.3784.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=74bp
MPDSPPPRCENCKPGEATEERETAVADSGCQETYGFVVSCMEAHRGNVAD
CREEWQAFRACHSSSARKKSQSI*
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mRNA from alignment at M-pyrifera_M_contig1183:11725..11946+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig1183.3784.1 ID=mRNA_M-pyrifera_M_contig1183.3784.1|Name=mRNA_M-pyrifera_M_contig1183.3784.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=222bp|location=Sequence derived from alignment at M-pyrifera_M_contig1183:11725..11946+ (Macrocystis pyrifera P11B4 male)
ATGCCCGACTCGCCACCTCCCAGGTGCGAAAACTGCAAACCCGGTGAGGC
CACGGAGGAGCGAGAAACAGCCGTGGCAGACTCGGGATGTCAGGAAACGT
ACGGGTTTGTCGTGAGCTGTATGGAGGCACATAGAGGGAACGTGGCGGAT
TGCCGGGAGGAGTGGCAGGCTTTCAGGGCGTGTCACAGCAGTAGCGCACG
GAAGAAGTCGCAATCTATATGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig1183:11725..11946+

>mRNA_M-pyrifera_M_contig1183.3784.1 ID=mRNA_M-pyrifera_M_contig1183.3784.1|Name=mRNA_M-pyrifera_M_contig1183.3784.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=444bp|location=Sequence derived from alignment at M-pyrifera_M_contig1183:11725..11946+ (Macrocystis pyrifera P11B4 male)
ATGCCCGACTCGCCACCTCCCAGGTGCGAAAACTGCAAACCCGGTGAGGC
CACGGAGGAGCGAGAAACAGCCGTGGCAGACTCGGGATGTCAGGAAACGT
ACGGGTTTGTCGTGAGCTGTATGGAGGCACATAGAGGGAACGTGGCGGAT
TGCCGGGAGGAGTGGCAGGCTTTCAGGGCGTGTCACAGCAGTAGCGCACG
GAAGAAGTCGCAATCTATATGAATGCCCGACTCGCCACCTCCCAGGTGCG
AAAACTGCAAACCCGGTGAGGCCACGGAGGAGCGAGAAACAGCCGTGGCA
GACTCGGGATGTCAGGAAACGTACGGGTTTGTCGTGAGCTGTATGGAGGC
ACATAGAGGGAACGTGGCGGATTGCCGGGAGGAGTGGCAGGCTTTCAGGG
CGTGTCACAGCAGTAGCGCACGGAAGAAGTCGCAATCTATATGA
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