mRNA_M-pyrifera_M_contig118223.3776.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig118223.3776.1
Unique NamemRNA_M-pyrifera_M_contig118223.3776.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig118223.3776.1 vs. uniprot
Match: A0A661V7C5_9CHLR (Uncharacterized protein (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A661V7C5_9CHLR)

HSP 1 Score: 138 bits (348), Expect = 3.460e-37
Identity = 76/171 (44.44%), Postives = 99/171 (57.89%), Query Frame = 1 
Query:    1 ADDAPWFREIQLRSYRPDSNHFLQMGSGNWSIGAEKRIQLPVIVLETVPRMNSQGYELGSGSLLVQQDVIFNILTENKSIRNNLRDYIGQQSDKAIWLFDNNKVNTAGDYPLDYRGERI-GSKMYPDLVKTTGNNGHRWQQCYMTDARVTQSETLNPNLYEATVRTTMEVV 510
            AD APW+ EIQ  S R D   F ++GSGNW I A  R+QLP IV+E VPR     +++G  S  V QDV+F+I+ + +  RNNL D +  Q D  I ++DNN V  +G YPLDYRG  +  SK YP L         R+  C      VT+  T+N  LY+ TVR T E+V
Sbjct:  116 ADQAPWWDEIQQNSLRVDDTTFDEIGSGNWGILANHRVQLPAIVVEAVPRRTFTPFQMGDVSQFVYQDVLFHIIADTRWWRNNLVDIVSLQKDTTIKMYDNNTVAQSGAYPLDYRGMLVDSSKTYPCLATDYPYKNMRFFNCI-----VTELNTINSRLYQGTVRATFELV 281
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig118223.3776.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A661V7C5_9CHLR3.460e-3744.44Uncharacterized protein (Fragment) n=1 Tax=Chlorof... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig118223contigM-pyrifera_M_contig118223:19..543 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size525
Cds size525
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815701.9873662-CDS-M-pyrifera_M_contig118223:18..5431622815701.9873662-CDS-M-pyrifera_M_contig118223:18..543Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118223 19..543 -
1692277529.1773145-CDS-M-pyrifera_M_contig118223:18..5431692277529.1773145-CDS-M-pyrifera_M_contig118223:18..543Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118223 19..543 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig118223.3776.1prot_M-pyrifera_M_contig118223.3776.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig118223 19..543 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig118223.3776.1

>prot_M-pyrifera_M_contig118223.3776.1 ID=prot_M-pyrifera_M_contig118223.3776.1|Name=mRNA_M-pyrifera_M_contig118223.3776.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=175bp
ADDAPWFREIQLRSYRPDSNHFLQMGSGNWSIGAEKRIQLPVIVLETVPR
MNSQGYELGSGSLLVQQDVIFNILTENKSIRNNLRDYIGQQSDKAIWLFD
NNKVNTAGDYPLDYRGERIGSKMYPDLVKTTGNNGHRWQQCYMTDARVTQ
SETLNPNLYEATVRTTMEVVLGGA*
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mRNA from alignment at M-pyrifera_M_contig118223:19..543-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig118223.3776.1 ID=mRNA_M-pyrifera_M_contig118223.3776.1|Name=mRNA_M-pyrifera_M_contig118223.3776.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=525bp|location=Sequence derived from alignment at M-pyrifera_M_contig118223:19..543- (Macrocystis pyrifera P11B4 male)
GCTGATGATGCTCCTTGGTTTAGAGAAATACAATTACGTTCATATAGACC
AGACAGTAATCATTTCTTACAAATGGGTTCTGGTAATTGGAGTATTGGAG
CAGAAAAAAGAATACAATTACCTGTTATAGTTTTAGAGACCGTTCCTAGA
ATGAATTCTCAAGGATATGAATTGGGTAGTGGTTCTTTACTAGTACAACA
GGATGTTATATTTAATATTTTGACCGAAAATAAAAGCATTAGAAACAATT
TAAGAGATTATATTGGTCAGCAATCAGATAAGGCAATATGGTTATTTGAC
AATAATAAGGTGAATACTGCTGGTGATTATCCTCTAGATTATAGGGGAGA
AAGAATCGGCAGTAAAATGTATCCAGACTTAGTTAAAACAACCGGAAATA
ATGGTCACAGATGGCAACAATGTTACATGACCGATGCCAGAGTCACTCAA
TCGGAGACTTTAAATCCAAATCTTTATGAAGCTACTGTAAGAACTACTAT
GGAAGTAGTTTTGGGTGGAGCATAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig118223:19..543-

>mRNA_M-pyrifera_M_contig118223.3776.1 ID=mRNA_M-pyrifera_M_contig118223.3776.1|Name=mRNA_M-pyrifera_M_contig118223.3776.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1050bp|location=Sequence derived from alignment at M-pyrifera_M_contig118223:19..543- (Macrocystis pyrifera P11B4 male)
GCTGATGATGCTCCTTGGTTTAGAGAAATACAATTACGTTCATATAGACC
AGACAGTAATCATTTCTTACAAATGGGTTCTGGTAATTGGAGTATTGGAG
CAGAAAAAAGAATACAATTACCTGTTATAGTTTTAGAGACCGTTCCTAGA
ATGAATTCTCAAGGATATGAATTGGGTAGTGGTTCTTTACTAGTACAACA
GGATGTTATATTTAATATTTTGACCGAAAATAAAAGCATTAGAAACAATT
TAAGAGATTATATTGGTCAGCAATCAGATAAGGCAATATGGTTATTTGAC
AATAATAAGGTGAATACTGCTGGTGATTATCCTCTAGATTATAGGGGAGA
AAGAATCGGCAGTAAAATGTATCCAGACTTAGTTAAAACAACCGGAAATA
ATGGTCACAGATGGCAACAATGTTACATGACCGATGCCAGAGTCACTCAA
TCGGAGACTTTAAATCCAAATCTTTATGAAGCTACTGTAAGAACTACTAT
GGAAGTAGTTTTGGGTGGAGCATAAGCTGATGATGCTCCTTGGTTTAGAG
AAATACAATTACGTTCATATAGACCAGACAGTAATCATTTCTTACAAATG
GGTTCTGGTAATTGGAGTATTGGAGCAGAAAAAAGAATACAATTACCTGT
TATAGTTTTAGAGACCGTTCCTAGAATGAATTCTCAAGGATATGAATTGG
GTAGTGGTTCTTTACTAGTACAACAGGATGTTATATTTAATATTTTGACC
GAAAATAAAAGCATTAGAAACAATTTAAGAGATTATATTGGTCAGCAATC
AGATAAGGCAATATGGTTATTTGACAATAATAAGGTGAATACTGCTGGTG
ATTATCCTCTAGATTATAGGGGAGAAAGAATCGGCAGTAAAATGTATCCA
GACTTAGTTAAAACAACCGGAAATAATGGTCACAGATGGCAACAATGTTA
CATGACCGATGCCAGAGTCACTCAATCGGAGACTTTAAATCCAAATCTTT
ATGAAGCTACTGTAAGAACTACTATGGAAGTAGTTTTGGGTGGAGCATAA
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