mRNA_M-pyrifera_M_contig118192.3768.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig118192.3768.1
Unique NamemRNA_M-pyrifera_M_contig118192.3768.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig118192.3768.1 vs. uniprot
Match: A0A5C5X905_9PLAN (Uncharacterized protein n=1 Tax=Rubinisphaera italica TaxID=2527969 RepID=A0A5C5X905_9PLAN)

HSP 1 Score: 57.8 bits (138), Expect = 2.340e-8
Identity = 28/60 (46.67%), Postives = 41/60 (68.33%), Query Frame = 1 
Query:    4 MLAFIHIEKAAGTTITTILRQSFGLGHCDLASWHE-YRQEYAVPSALDLRRALQFYPRLQ 180
            MLAF+HIEK AG+T+ +ILR+SFG+ H D+ SW   +  E +  ++ DLR+  + Y  LQ
Sbjct:    1 MLAFVHIEKTAGSTMVSILRKSFGIHHADVRSWETPWNSEVSNFTSSDLRKTKRVYCNLQ 60
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BLAST of mRNA_M-pyrifera_M_contig118192.3768.1 vs. uniprot
Match: A0A0T6A6F0_9BACT (Uncharacterized protein n=1 Tax=candidate division NC10 bacterium CSP1-5 TaxID=1640516 RepID=A0A0T6A6F0_9BACT)

HSP 1 Score: 55.1 bits (131), Expect = 2.200e-7
Identity = 28/59 (47.46%), Postives = 36/59 (61.02%), Query Frame = 1 
Query:    4 MLAFIHIEKAAGTTITTILRQSFGLGHCDLASWHEYRQEYAVPSALDLRRALQFYPRLQ 180
            MLAFIH+ K  GTT++ ILR S+GL HC +  WH  R      S  DL+R  + YP L+
Sbjct:    1 MLAFIHMHKTGGTTLSHILRSSYGLRHCQVEPWHA-RSTGPPFSKHDLQRLHRVYPNLK 58
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BLAST of mRNA_M-pyrifera_M_contig118192.3768.1 vs. uniprot
Match: A0A0S8CMJ4_9CHLR (Uncharacterized protein n=1 Tax=Dehalococcoidia bacterium SG8_51_3 TaxID=1703394 RepID=A0A0S8CMJ4_9CHLR)

HSP 1 Score: 54.7 bits (130), Expect = 3.040e-7
Identity = 27/59 (45.76%), Postives = 35/59 (59.32%), Query Frame = 1 
Query:    4 MLAFIHIEKAAGTTITTILRQSFGLGHCDLASWHEYRQEYAVPSALDLRRALQFYPRLQ 180
            ML FIHI K  GTT++ ILR S+G  HC +  W   R   +  SA DL+R  + YP L+
Sbjct:    1 MLVFIHINKTGGTTLSHILRSSYGFRHCQVEPWQS-RWAISPFSAQDLKRLRRLYPNLK 58
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BLAST of mRNA_M-pyrifera_M_contig118192.3768.1 vs. uniprot
Match: A0A7V3FBQ2_9ACTN (Uncharacterized protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7V3FBQ2_9ACTN)

HSP 1 Score: 50.4 bits (119), Expect = 1.070e-5
Identity = 25/59 (42.37%), Postives = 35/59 (59.32%), Query Frame = 1 
Query:    4 MLAFIHIEKAAGTTITTILRQSFGLGHCDLASWHEYRQEYAVPSALDLRRALQFYPRLQ 180
            +LAFIH+ K AGTT+T I+R S+GL HC +  W       +  +A   R   + YPRL+
Sbjct:   17 VLAFIHLTKTAGTTVTHIMRSSYGLRHCQVEPWTG-----SPLTAEQFRHIRRLYPRLR 70
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig118192.3768.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A5C5X905_9PLAN2.340e-846.67Uncharacterized protein n=1 Tax=Rubinisphaera ital... [more]
A0A0T6A6F0_9BACT2.200e-747.46Uncharacterized protein n=1 Tax=candidate division... [more]
A0A0S8CMJ4_9CHLR3.040e-745.76Uncharacterized protein n=1 Tax=Dehalococcoidia ba... [more]
A0A7V3FBQ2_9ACTN1.070e-542.37Uncharacterized protein n=1 Tax=Actinomycetia bact... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig118192contigM-pyrifera_M_contig118192:370..549 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size180
Cds size177
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815701.3396554-UTR-M-pyrifera_M_contig118192:369..3721622815701.3396554-UTR-M-pyrifera_M_contig118192:369..372Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig118192 370..372 +
1692277528.755421-UTR-M-pyrifera_M_contig118192:369..3721692277528.755421-UTR-M-pyrifera_M_contig118192:369..372Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig118192 370..372 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815701.3555813-CDS-M-pyrifera_M_contig118192:372..5491622815701.3555813-CDS-M-pyrifera_M_contig118192:372..549Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118192 373..549 +
1692277528.7654774-CDS-M-pyrifera_M_contig118192:372..5491692277528.7654774-CDS-M-pyrifera_M_contig118192:372..549Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118192 373..549 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig118192.3768.1prot_M-pyrifera_M_contig118192.3768.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig118192 373..549 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig118192.3768.1

>prot_M-pyrifera_M_contig118192.3768.1 ID=prot_M-pyrifera_M_contig118192.3768.1|Name=mRNA_M-pyrifera_M_contig118192.3768.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=59bp
MLAFIHIEKAAGTTITTILRQSFGLGHCDLASWHEYRQEYAVPSALDLRR
ALQFYPRLQ
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mRNA from alignment at M-pyrifera_M_contig118192:370..549+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig118192.3768.1 ID=mRNA_M-pyrifera_M_contig118192.3768.1|Name=mRNA_M-pyrifera_M_contig118192.3768.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=180bp|location=Sequence derived from alignment at M-pyrifera_M_contig118192:370..549+ (Macrocystis pyrifera P11B4 male)
TCCATGCTCGCCTTCATCCACATCGAGAAAGCCGCAGGCACGACGATCAC
CACGATCCTGCGCCAGTCGTTCGGGCTCGGCCATTGTGACCTCGCCAGTT
GGCACGAGTATCGTCAGGAGTACGCGGTTCCCTCGGCCCTCGACCTGCGG
CGGGCGTTGCAGTTTTATCCGCGCCTGCAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig118192:370..549+

>mRNA_M-pyrifera_M_contig118192.3768.1 ID=mRNA_M-pyrifera_M_contig118192.3768.1|Name=mRNA_M-pyrifera_M_contig118192.3768.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=354bp|location=Sequence derived from alignment at M-pyrifera_M_contig118192:370..549+ (Macrocystis pyrifera P11B4 male)
ATGCTCGCCTTCATCCACATCGAGAAAGCCGCAGGCACGACGATCACCAC
GATCCTGCGCCAGTCGTTCGGGCTCGGCCATTGTGACCTCGCCAGTTGGC
ACGAGTATCGTCAGGAGTACGCGGTTCCCTCGGCCCTCGACCTGCGGCGG
GCGTTGCAGTTTTATCCGCGCCTGCAGATGCTCGCCTTCATCCACATCGA
GAAAGCCGCAGGCACGACGATCACCACGATCCTGCGCCAGTCGTTCGGGC
TCGGCCATTGTGACCTCGCCAGTTGGCACGAGTATCGTCAGGAGTACGCG
GTTCCCTCGGCCCTCGACCTGCGGCGGGCGTTGCAGTTTTATCCGCGCCT
GCAG
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