mRNA_M-pyrifera_M_contig11806.3751.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig11806.3751.1
Unique NamemRNA_M-pyrifera_M_contig11806.3751.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig11806.3751.1 vs. uniprot
Match: A0A6H5JCA8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCA8_9PHAE)

HSP 1 Score: 174 bits (440), Expect = 8.790e-49
Identity = 82/141 (58.16%), Postives = 104/141 (73.76%), Query Frame = 1 
Query:    1 DWGFGNFIAVQWRTESSTGNLTDCYEEVKVIIEQQRAALGYGVHQVFVNTDLVAGTSGTYRDGAKSAGAKLLEMIQQDYPAALDNRIHTFTSKISDTGTRAIVAGLASASSEIMLASSLNGKSHRGDQDAYRCQKVYSGYI 423
            DW  G F+AVQWRTE S GNLT+CY+EVK ++E+QR ALGYG HQV  NTDL   TSGTY+  A++ GA +L++I  DYP AL N +H F ++I D+G RA V+GLA ASS++M+ SSLN    +   DAYRC+K YSGYI
Sbjct:  397 DWETGEFVAVQWRTELSNGNLTECYQEVKALVEEQRVALGYGTHQVLFNTDLYGKTSGTYKASAQAHGAAVLDLINHDYPHALHNELHQFFTEIDDSGVRAFVSGLAVASSQVMIGSSLNDPRTKDILDAYRCEKPYSGYI 537
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BLAST of mRNA_M-pyrifera_M_contig11806.3751.1 vs. uniprot
Match: D8LN55_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN55_ECTSI)

HSP 1 Score: 171 bits (432), Expect = 1.600e-48
Identity = 80/141 (56.74%), Postives = 104/141 (73.76%), Query Frame = 1 
Query:    1 DWGFGNFIAVQWRTESSTGNLTDCYEEVKVIIEQQRAALGYGVHQVFVNTDLVAGTSGTYRDGAKSAGAKLLEMIQQDYPAALDNRIHTFTSKISDTGTRAIVAGLASASSEIMLASSLNGKSHRGDQDAYRCQKVYSGYI 423
            DW  G F+AVQWRTE + G+LT+CY+EVK ++E+QR ALGYG HQV  NTDL   TSGTY+  A++ GA +L++I  DYP AL N +H F ++I D+G RA V+GLA ASS++M+ SSLN    +   DAYRC+K YSGYI
Sbjct:  272 DWETGEFVAVQWRTELANGDLTECYKEVKALVEEQRVALGYGTHQVLFNTDLYGKTSGTYKASAQAHGAAVLDLINDDYPQALHNELHHFFTEIDDSGVRAFVSGLAVASSQVMIGSSLNDPRTKDIPDAYRCEKPYSGYI 412
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BLAST of mRNA_M-pyrifera_M_contig11806.3751.1 vs. uniprot
Match: D7G2V9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2V9_ECTSI)

HSP 1 Score: 119 bits (298), Expect = 7.040e-30
Identity = 63/141 (44.68%), Postives = 88/141 (62.41%), Query Frame = 1 
Query:    4 WGFGNFIAVQWRTESSTGNLTDCYE-EVKVIIEQQRAALGYGVHQVFVNTDLVAGTSGTYRDGAKSAGAKLLEMIQQDYPAALDNRIHTFTSKISDTGTRAIVAGLASASSEIMLASSLNGKSHRGDQDAYRCQKVYSGYI 423
            W  G F++VQWRTE+STGNLT+CY   V+  +E++R +LG+   QVF NTDLV  TS TY     SA   +++ I+ DYP A+DN ++   +   D G +AI++GL SAS++ +L SS NG           CQK +S YI
Sbjct:  123 WKDGGFLSVQWRTETSTGNLTECYGLHVRSAVEERRLSLGFSRSQVFFNTDLVGETSTTYNATVVSANNGVVDAIRGDYPCAMDNTVYDILNDERDAGVKAIISGLISASADFLLTSSFNGTGSN------ECQKPHSKYI 257
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BLAST of mRNA_M-pyrifera_M_contig11806.3751.1 vs. uniprot
Match: A0A6H5JD38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD38_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 1.230e-29
Identity = 64/141 (45.39%), Postives = 89/141 (63.12%), Query Frame = 1 
Query:    4 WGFGNFIAVQWRTESSTGNLTDCYE-EVKVIIEQQRAALGYGVHQVFVNTDLVAGTSGTYRDGAKSAGAKLLEMIQQDYPAALDNRIHTFTSKISDTGTRAIVAGLASASSEIMLASSLNGKSHRGDQDAYRCQKVYSGYI 423
            W  G F++VQWRTE+STGNLT+CY   V+  +E++R +LG+   QVF NTDLV  TS TY     SA + +++ I+ DYP A+DN ++   +   D G +AIV+GL SAS++ +L SS NG           CQK +S YI
Sbjct:  198 WKDGGFLSVQWRTETSTGNLTECYGVHVRSAVEERRLSLGFSRSQVFFNTDLVGETSTTYNATVVSAYSGVVDAIRGDYPVAMDNTVYDILNDEQDAGVKAIVSGLISASADFLLTSSFNGTGSN------ECQKPHSKYI 332
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BLAST of mRNA_M-pyrifera_M_contig11806.3751.1 vs. uniprot
Match: D8LFR0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFR0_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 2.790e-23
Identity = 55/142 (38.73%), Postives = 86/142 (60.56%), Query Frame = 1 
Query:    4 WGFGNFIAVQWRTESSTGNLTDCYEEVKVIIEQQRAALGYGVHQVFVNTDLVAGTSGTYRDGAKSAGAKLLEMIQQDYPAALDNRIHTFTSKISDTGTRAIVAGLASASSEIMLASSLNGK--SHRGDQDAYRCQKVYSGYI 423
            W    F+AVQWRTE+STGNLT CY  V+  +E+ R   G+   QVF NTDL+  +SGTY     +   ++L MI +DYP+A++N +  +   + DTG +++ +G+ +A   ++LAS+      S RG      CQK++S ++
Sbjct:  305 WENEAFLAVQWRTETSTGNLTACYGHVREAVERYREQEGFDRGQVFFNTDLMPHSSGTYSSQQLAVKLQVLAMIDEDYPSAMNNTVTAYLDNLEDTGVQSLTSGVVAALPRVLLASTERKWWWSRRGV-----CQKIHSHFV 441
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BLAST of mRNA_M-pyrifera_M_contig11806.3751.1 vs. uniprot
Match: A0A6H5KP62_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP62_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 7.230e-23
Identity = 54/142 (38.03%), Postives = 86/142 (60.56%), Query Frame = 1 
Query:    4 WGFGNFIAVQWRTESSTGNLTDCYEEVKVIIEQQRAALGYGVHQVFVNTDLVAGTSGTYRDGAKSAGAKLLEMIQQDYPAALDNRIHTFTSKISDTGTRAIVAGLASASSEIMLASSLNGK--SHRGDQDAYRCQKVYSGYI 423
            W    F+AVQWRTE+STGNLT CY  V+  +E+ R   G+   QVF NTDL   +SGTY     +   ++L MI +DYP+A+++ +  +   + DTG +++ +G+ +A + ++LAS+      S RG      CQK++S ++
Sbjct:  303 WENEAFLAVQWRTETSTGNLTACYGHVREAVERYREQEGFDRGQVFFNTDLTPHSSGTYSSQQLAVKQQVLAMIDEDYPSAMNSTVTAYLDNLEDTGVQSLTSGVVAALARVLLASTKRKWWWSQRGV-----CQKIHSHFV 439
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11806.3751.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5JCA8_9PHAE8.790e-4958.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LN55_ECTSI1.600e-4856.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G2V9_ECTSI7.040e-3044.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JD38_9PHAE1.230e-2945.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LFR0_ECTSI2.790e-2338.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KP62_9PHAE7.230e-2338.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig11806contigM-pyrifera_M_contig11806:1603..3699 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size425
Cds size423
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig11806.3751.1prot_M-pyrifera_M_contig11806.3751.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig11806 1603..3699 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815700.5209267-CDS-M-pyrifera_M_contig11806:1602..17401622815700.5209267-CDS-M-pyrifera_M_contig11806:1602..1740Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11806 1603..1740 -
1692277528.361123-CDS-M-pyrifera_M_contig11806:1602..17401692277528.361123-CDS-M-pyrifera_M_contig11806:1602..1740Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11806 1603..1740 -
1622815700.5329351-CDS-M-pyrifera_M_contig11806:2432..25281622815700.5329351-CDS-M-pyrifera_M_contig11806:2432..2528Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11806 2433..2528 -
1692277528.370385-CDS-M-pyrifera_M_contig11806:2432..25281692277528.370385-CDS-M-pyrifera_M_contig11806:2432..2528Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11806 2433..2528 -
1622815700.545726-CDS-M-pyrifera_M_contig11806:3147..32551622815700.545726-CDS-M-pyrifera_M_contig11806:3147..3255Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11806 3148..3255 -
1692277528.37942-CDS-M-pyrifera_M_contig11806:3147..32551692277528.37942-CDS-M-pyrifera_M_contig11806:3147..3255Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11806 3148..3255 -
1622815700.5578225-CDS-M-pyrifera_M_contig11806:3618..36991622815700.5578225-CDS-M-pyrifera_M_contig11806:3618..3699Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11806 3619..3699 -
1692277528.393395-CDS-M-pyrifera_M_contig11806:3618..36991692277528.393395-CDS-M-pyrifera_M_contig11806:3618..3699Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11806 3619..3699 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig11806.3751.1

>prot_M-pyrifera_M_contig11806.3751.1 ID=prot_M-pyrifera_M_contig11806.3751.1|Name=mRNA_M-pyrifera_M_contig11806.3751.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=141bp
DWGFGNFIAVQWRTESSTGNLTDCYEEVKVIIEQQRAALGYGVHQVFVNT
DLVAGTSGTYRDGAKSAGAKLLEMIQQDYPAALDNRIHTFTSKISDTGTR
AIVAGLASASSEIMLASSLNGKSHRGDQDAYRCQKVYSGYI
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mRNA from alignment at M-pyrifera_M_contig11806:1603..3699-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig11806.3751.1 ID=mRNA_M-pyrifera_M_contig11806.3751.1|Name=mRNA_M-pyrifera_M_contig11806.3751.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=2097bp|location=Sequence derived from alignment at M-pyrifera_M_contig11806:1603..3699- (Macrocystis pyrifera P11B4 male)
GATTGGGGATTCGGAAATTTTATCGCGGTGCAGTGGCGGACGGAGAGTTC
AACAGGAAACCTCACCGACTGCTATGAAGAGGTACAGTGCAATACATTAT
GTCATGCAGTATGCGCAGTATATTGAGTGTGCTCTGTGTACGAGATGAGT
GTGCCTTGTGTCGCAGCTTGGGGACGTGTAGAAGAAGCAGGCATATTTTT
CCCTGATGCATGACATGCTCGGGAGATGCCCTCTCTACCGATACATTATA
CTACTGAATTGTAAGTGTGTGCCCGTGCTTCCCTACACCGTGTGCGCTAT
CAGCCAGCAACGTTTTGGCCGAAAAGGTTTCACCCCCAAGTACAGTGGCG
GGCGTTGTGCCTGTACAGCATCTTGCGGCATCGGTAAAGCGGCATCACAA
CGTTTTCGATGCCTGTCTGGTCTTTGTCTGCCGTGTTGTCTCAGGTGAAA
GTTATCATCGAACAGCAAAGGGCCGCACTTGGATACGGGGTGCACCAAGT
CTTCGTCAACACCGATTTAGTCGCCGGGACTTCGGGCACATATCGAGATG
GGGTAAGATAACTTCAGTACGTTTGACCATCGAGTATGTTCGACGTTTCT
GCAGTATTCCGTGGGACAAAGACCAAGGGAAATTAGATTGTTTGCTCCGT
AGACTTGTCCCGATACCATCTCCGTCAAACGCTCCACGCGTGAAAATTAT
ACCATTGAGGGTGACATTTTCAAGAGTTCCGAGGAATATCGGCGTATTTC
CTCGTAGCTGATGTGTCGTCGAAAACCGAACAATGAAAAGAGACCGTCTT
GAAACCTGCTATTAATAGTACCGATGAACACGCAGTCGCGCCTAACAAGC
GAACGGGTTTTCCCTCGTAGGAGACCGCCTTGTTACCCAGCGTGAAACCC
AATCATACAGCTCCATTAAAAGAAAAACGTAAGTATGTAACCTGCCCTTA
ATACTCATTGACAGGAAACATCGGATCCTTAAAAACAAAATGTTTTAGTT
TTTTGTTCTCCTCAGTTATGTTGTCTCGGAGAATGTTTATGCAGATCAAC
GTTGAACCTCGTGCTCTTAAAAACACATTGTCGGGTGGCAAACGCATTAA
TATTTGAAATAGTCAGCTTACCCCGCCTGACAAGACATATTCTTCATCCC
CGGTTGGCGTCGTCGTGGCAGGCGAAATCAGCTGGTGCGAAGTTGCTTGA
GATGATACAACAAGACTACCCGGCTGCGCTCGACAACAGGATTCACACCT
TCACCTCCAAGATATCGGTTAGTACTCCTTTTGCTCCATTCACTCCATTT
ACAGTGCGTAGCAATATAATGCTGCTAAGAGCTGCTAGCGTGGGTAGACG
CAGTTCGACGCGAAGTCGATGAGGAATGAAAGGGCTGAAATCTCTCGCGA
AAAAGCTCCAAGGCACGAAATATGGGCAGTCGGTCGTTCGAATCTCAATC
GGGTGGAAGCTCAAATAGTCCTCATGTGGTATTTTTCCTTGTAGCTCGTT
TCGGACGTACATGCATGAAGTGATGGAAAACCGGCCAAACATATTTAAAA
GTGTCGTCTGGCAAGGCAAATTCAGGTATATCACAGTTCCCGGCAAACCG
ACAAGGTGAGTTCCACATATCACGGCACGACAAAACCCAAATGGGCCACT
GCCGACTGCTCCCGCAACGACTGGCCTGGTGCCAATACATTCAGATTCGC
ACTGCAACTGCAACTCTGTGCCTGACCAGAGTTAAGGTGTGTACGACCAA
TACCTCGCGTTTTCGTCAACGATATCTTTATGTAATGATGTAATGTTGCC
AGATTTTGTTTATTCCGGTTGGCCAATATTCCACCACAGGTAGTACAGGT
ATCGTGTTCTGAGTATTGGTTAGCTACTGTAAGGTTAAACGCAAACGTGG
CGCCACTCGATCGCCCCCCAACCCCCACGGTCGATGCTTCCTTCAAAATA
TGAAAACAGGACACAGGGACTAGAGCGATCGTCGCCGGTCTTGCCTCGGC
ATCCTCCGAGATTATGCTAGCCTCGTCGCTCAACGGCAAGTCGCACAGAG
GTGACCAAGACGCCTACCGCTGTCAGAAAGTATATTCGGGCTACATC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig11806:1603..3699-

>mRNA_M-pyrifera_M_contig11806.3751.1 ID=mRNA_M-pyrifera_M_contig11806.3751.1|Name=mRNA_M-pyrifera_M_contig11806.3751.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=846bp|location=Sequence derived from alignment at M-pyrifera_M_contig11806:1603..3699- (Macrocystis pyrifera P11B4 male)
GATTGGGGATTCGGAAATTTTATCGCGGTGCAGTGGCGGACGGAGAGTTC
AACAGGAAACCTCACCGACTGCTATGAAGAGGATTGGGGATTCGGAAATT
TTATCGCGGTGCAGTGGCGGACGGAGAGTTCAACAGGAAACCTCACCGAC
TGCTATGAAGAGGTGAAAGTTATCATCGAACAGCAAAGGGCCGCACTTGG
ATACGGGGTGCACCAAGTCTTCGTCAACACCGATTTAGTCGCCGGGACTT
CGGGCACATATCGAGATGGGGTGAAAGTTATCATCGAACAGCAAAGGGCC
GCACTTGGATACGGGGTGCACCAAGTCTTCGTCAACACCGATTTAGTCGC
CGGGACTTCGGGCACATATCGAGATGGGGCGAAATCAGCTGGTGCGAAGT
TGCTTGAGATGATACAACAAGACTACCCGGCTGCGCTCGACAACAGGATT
CACACCTTCACCTCCAAGATATCGGCGAAATCAGCTGGTGCGAAGTTGCT
TGAGATGATACAACAAGACTACCCGGCTGCGCTCGACAACAGGATTCACA
CCTTCACCTCCAAGATATCGGACACAGGGACTAGAGCGATCGTCGCCGGT
CTTGCCTCGGCATCCTCCGAGATTATGCTAGCCTCGTCGCTCAACGGCAA
GTCGCACAGAGGTGACCAAGACGCCTACCGCTGTCAGAAAGTATATTCGG
GCTACATCGACACAGGGACTAGAGCGATCGTCGCCGGTCTTGCCTCGGCA
TCCTCCGAGATTATGCTAGCCTCGTCGCTCAACGGCAAGTCGCACAGAGG
TGACCAAGACGCCTACCGCTGTCAGAAAGTATATTCGGGCTACATC
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