mRNA_M-pyrifera_M_contig118032.3748.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig118032.3748.1
Unique NamemRNA_M-pyrifera_M_contig118032.3748.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig118032.3748.1 vs. uniprot
Match: UPI001C3CF245 (hypothetical protein n=1 Tax=Miltoncostaea oceani TaxID=2843216 RepID=UPI001C3CF245)

HSP 1 Score: 173 bits (439), Expect = 5.430e-48
Identity = 96/183 (52.46%), Postives = 122/183 (66.67%), Query Frame = 1
Query:    1 TLQSPPAAPEPPLPTAFDGRAALEDAATLGAIAPERAPGTQGGERAADWVREQLDDLPGVDGKVQEQAFSARSDGQMVGMRNVYVVVPGDGNGATRPAILVVAPRDTPAGVRSGASATGLLIALARQWATTTQEHPILFVSTDGSTAGNAGVRWFLSRFSELKIGAAVVLDDPGARQGTGVSI 549
            TL++P   PEP LP+  DG+ AL+    L  IAPER PG+     AA WV++QL  +PG  G+VQ Q   ARS  + V ++NVY+VVPG G G  R  I+VVAPRDTP+GV +G S+T +L+ +A+  ATT  + P LFVS DGST GNAG+RWFLSRFS   + AA+VLD PG   G  V I
Sbjct:   24 TLETPDRGPEPALPSTIDGQLALDLNGQLAGIAPERPPGSAPDLAAARWVQDQLSQVPGGAGRVQTQDLEARSGRETVRLQNVYLVVPGRGTGRARAGIVVVAPRDTPSGVSAGTSSTAVLLRMAQVSATTRHQRPHLFVSVDGSTVGNAGMRWFLSRFSAFPLSAAIVLDAPGETTGDRVHI 206          
BLAST of mRNA_M-pyrifera_M_contig118032.3748.1 vs. uniprot
Match: UPI001C3C5815 (hypothetical protein n=1 Tax=Miltoncostaea marina TaxID=2843215 RepID=UPI001C3C5815)

HSP 1 Score: 96.3 bits (238), Expect = 6.780e-22
Identity = 78/150 (52.00%), Postives = 82/150 (54.67%), Query Frame = -2
Query:    3 PAFPAVEPSVETNRIGCSWVVVAHCRASAIRSPVADAPERTPAGVSRGATTRIAGRVAPFPSPGTTT*TLRIPTICPSERALKACSWTFPSTPGRSSSCSRTQSAARSPPWVPGARSGAMAPSVAASSSAARPSKAVGSGGSGAAGGDCR 452
            PA P+VEPSVETNR G  W VVA  RAS   + VA AP  TPAGVSRGATT         P PGTT  TLR  T  PS RA  +CS T    PG   SC RT +AA      PG RSGA   S  ASS    PS   GS GSG   G  R
Sbjct:    2 PALPSVEPSVETNRWGRWWRVVADARASRSSTAVALAPASTPAGVSRGATTSTPPPDTSPPVPGTTRYTLRSRTGPPSARASSSCSCTRRCAPGIWDSCWRTHAAAARSGGEPGGRSGATPESWLASSRVPWPSIVDGSAGSGPGSGASR 151          
BLAST of mRNA_M-pyrifera_M_contig118032.3748.1 vs. uniprot
Match: A0A537ZWA1_9ACTN (M28 family peptidase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A537ZWA1_9ACTN)

HSP 1 Score: 74.3 bits (181), Expect = 3.130e-12
Identity = 59/176 (33.52%), Postives = 88/176 (50.00%), Query Frame = 1
Query:   22 APEPPLPTA-----FDGRAALEDAATLGAIAPERAPGTQGGERAADWVREQLDDLPGVDGKVQEQAFSARSDGQMVGMRNVYVVVPGDGNGATRPAILVVAPRDTPAG--VRSGASATGLLIALARQWATTTQEHPILFVSTDGSTAGNAGVRWFLSRFSEL-KIGAAVVLDDPGA 525
            AP  PLP       FD  AA      +   AP+R PG++G    A  V +    + G  G + EQ FS + DG  V +RNV + +PGD    T  +++V+APRD+  G         T  L+ L  + +  +    ++FVSTDGS+AG  G R F + + +L  + A + L  PG+
Sbjct:   27 APPDPLPAVAAPAEFDELAAARFDRQITDAAPDRTPGSEGDAAIAQMVEQHFRQVEG--GLISEQRFSGQFDGHDVDLRNVILTLPGD----TDRSVVVMAPRDSGGGPGXXXXXXXTAALLELVDELSAQSHTKTLVFVSTDGSSAGVLGAREFATAYPDLASVDALIDLWQPGS 196          
BLAST of mRNA_M-pyrifera_M_contig118032.3748.1 vs. uniprot
Match: A0A538A1T5_9ACTN (M28 family peptidase (Fragment) n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538A1T5_9ACTN)

HSP 1 Score: 73.6 bits (179), Expect = 5.110e-12
Identity = 56/162 (34.57%), Postives = 87/162 (53.70%), Query Frame = 1
Query:   49 FDGRAALEDAATLGAIAPERAPGTQGGERAADWVREQLDDLPGVDGKVQEQAFSARSDGQMVGMRNVYVVVPGDGNGATRPAILVVAPRDTPAG--VRSGASATGLLIALARQWATTTQEHPILFVSTDGSTAGNAGVRWFLSRFSELK-IGAAVVLDDPGA 525
            FD  AA +    +   AP R PG+ G    AD V ++   +   +G+V +Q F+   +G  V +RN+ + +PG+    +  +++V+A RD+ +G    S A+AT  L+ L     T      ++FVSTDG +AG AG R F  RF++   I  AVVL  PG+
Sbjct:   44 FDQDAAAKIDRQIVGAAPVRPPGSDGDLAIADMVEKRF--MRVSEGQVAQQRFAGSFEGNDVQLRNLILTLPGE----SPRSVVVLAARDSASGPGAASSAAATATLLELVDSLRTARHTKTLVFVSTDGGSAGAAGAREFAERFAQRDLIDGAVVLWQPGS 199          
BLAST of mRNA_M-pyrifera_M_contig118032.3748.1 vs. uniprot
Match: A0A2V2SG92_9BACT (Peptidase_M28 domain-containing protein (Fragment) n=1 Tax=Candidatus Rokubacteria bacterium TaxID=2053607 RepID=A0A2V2SG92_9BACT)

HSP 1 Score: 63.5 bits (153), Expect = 1.620e-8
Identity = 56/167 (33.53%), Postives = 84/167 (50.30%), Query Frame = 1
Query:   31 PPLPTAFDGRAALEDAATLGAIAPERAPGTQGGERAADWVREQLDDLPGVDGKVQEQAFSARSDGQMVGMRNVYVVVPGDGNGATRPAILVVAPRDTPAGV-RSGASATGLLIALARQWATTTQEHPILFVSTDGSTAGNAGVRWFLSRFSEL-KIGAAVVLDDPGA 525
            P  P AF G  A  D A L    P+R PG+   +     V ++   L G +   ++  F  + DG  V M NV  ++    N  +   I+V+APRD       S AS+T +L+ +A     ++++   +FVS DGS AGNAG R F   + +  K+ A +V+DD GA
Sbjct:   35 PIAPDAFQGDLAYGDTARLLKQYPDRLPGSASDQALGAAVAQRFRAL-GFE--TRQDRFDGQYDGNGVSMSNVEGLL----NAPSDRQIVVMAPRDAAGSPGASSASSTAVLLQMAEALDGSSRKKTFVFVSLDGSAAGNAGARHFAETYPDRSKVDAILVVDDIGA 194          
BLAST of mRNA_M-pyrifera_M_contig118032.3748.1 vs. uniprot
Match: A0A0F8YZ80_9ZZZZ (Peptidase_M28 domain-containing protein (Fragment) n=1 Tax=marine sediment metagenome TaxID=412755 RepID=A0A0F8YZ80_9ZZZZ)

HSP 1 Score: 60.8 bits (146), Expect = 1.140e-7
Identity = 68/180 (37.78%), Postives = 87/180 (48.33%), Query Frame = 1
Query:    1 TLQSPPAAPEPPL-PTAFDGRAALEDAATLGAIAPERAPGTQGGERAADWVREQLDDLPGVDGKVQEQAFSARSDGQMVGMRNVYVVVPGDGNGATRPAILVVAPRDTPAGVRSGA---SATGLLIALARQWATTTQEHPILFVSTDGSTAGNAGVRWFLSRFSEL-KIGAAVVLDDPGA 525
            +L   PAA  P L P AF  + A   A  L    P+R PG+   E AA+ VR + + L G +       F A   G+ V M NV     G   G +   ++++A RD  AG   GA   S TG+L+  A            +FVSTDG TA  AG R F  R+ E  KI AA+VLDD GA
Sbjct:   18 SLDEHPAALVPALAPEAFSEQGADTTARELIDRFPDRRPGSDDDEAAAELVRGRFESL-GFE--TSRDRFEAPVKGEDVTMTNVQ----GTLRGPSDRQVVLLAHRD--AGRSPGAASASGTGVLLEFAAALEGLRHRKTFVFVSTDGGTADAAGARRFAQRYPEKEKIDAALVLDDIGA 188          
BLAST of mRNA_M-pyrifera_M_contig118032.3748.1 vs. uniprot
Match: A0A7W1JZE7_9ACTN (M28 family peptidase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7W1JZE7_9ACTN)

HSP 1 Score: 59.3 bits (142), Expect = 4.750e-7
Identity = 60/156 (38.46%), Postives = 73/156 (46.79%), Query Frame = 1
Query:   46 AFDGRAALEDAATLGAIAPERAPGTQGGERAADWVREQLDD--LPGVDGKVQEQAFSARSDGQ-MVGMRNVYVVVPGDGNGATRPAILVVAPRD---TPAGVRSGASATGLLIALARQW-----ATTTQ---EHPILFVSTDGSTAGNAGVRWFLS 471
            AFDG A    A  L      R PG  G      W R QL    LP     ++ + FSA   G+  V M+N+ V V G   G     I+V+A RD   T  G    AS T +LI LAR +     A+T +    H ILFVSTDG +AG  G  WF S
Sbjct:   58 AFDGEATKRLAQNLVVEQSSRRPGASG---PVQWFRSQLQPYGLP-----IRSERFSAVIPGRGKVEMQNLVVDVVGRSPGT----IVVMAHRDNDGTGQGANDNASGTAMLIQLARAYGAPAGASTGRLQPNHTILFVSTDGGSAGGLGAAWFAS 201          
BLAST of mRNA_M-pyrifera_M_contig118032.3748.1 vs. uniprot
Match: A0A538D870_9ACTN (M28 family peptidase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538D870_9ACTN)

HSP 1 Score: 59.3 bits (142), Expect = 4.750e-7
Identity = 59/179 (32.96%), Postives = 82/179 (45.81%), Query Frame = 1
Query:   31 PPLPTAFDGRAALEDAATLGAIAPERAPGTQGGERAADWVREQLDDLPGVDGKVQEQAFSARSDGQ-MVGMRNVYVVVPGDGNGATRPAILVVAPRDTPA---GVRSGASATGLLIALARQWATTTQ-------EHPILFVSTDGSTAGNAGVRWFLSRFSELKIGAAVVLDDPGARQG 534
            P L   FDG  A   A       P+RAPG+ G  RAA+WV ++LD   G++  +  + F A+  G+  V + NV  V  G  N      I+VVA RD      G     S T  L+ L+R +AT           H ILF+S+D  + G  G  +F++ +       AVV  D  A  G
Sbjct:   54 PTLQPDFDGATAKLTAEQFANNNPDRAPGSPGARRAANWVAQRLDQY-GLE--LGHERFHAKIPGRGNVELENVLAVRQGRSNEL----IVVVAHRDNTGAGPGANDNGSGTAALLELSRSYATPQAPPRPPQPNHTILFLSSDAGSFGGFGADYFITHYRYRDRVVAVVDLDSIAGNG 225          
BLAST of mRNA_M-pyrifera_M_contig118032.3748.1 vs. uniprot
Match: A0A177RAA2_9ACTN (Peptidase_M28 domain-containing protein n=1 Tax=Gaiella sp. SCGC AG-212-M14 TaxID=1799656 RepID=A0A177RAA2_9ACTN)

HSP 1 Score: 56.6 bits (135), Expect = 3.990e-6
Identity = 55/156 (35.26%), Postives = 68/156 (43.59%), Query Frame = 1
Query:   46 AFDGRAALEDAATLGAIAPERAPGTQGGERAADWVREQLDD--LPGVDGKVQEQAFSARSDGQ-MVGMRNVYVVVPGDGNGATRPAILVVAPRDTPA---GVRSGASATGLLIALARQWATTT--------QEHPILFVSTDGSTAGNAGVRWFLS 471
            AFDG A  + A  L      R PG  G      W R QL    LP     ++ + FSA   G+  V M+N+   V G   G     I+V+A RD      G    AS T +L+ LAR +              H ILFVSTDG +AG  G  WF S
Sbjct:   58 AFDGEATRQLAQNLVEEQSSRPPGASG---PVQWFRSQLQPYGLP-----IRTERFSAVIPGRGKVEMQNLVAEVVGRSPGT----IVVMAHRDNDGSGQGANDNASGTAMLVQLARAYGAPAGASSGRLRPNHTILFVSTDGGSAGGLGAAWFAS 201          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig118032.3748.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
UPI001C3CF2455.430e-4852.46hypothetical protein n=1 Tax=Miltoncostaea oceani ... [more]
UPI001C3C58156.780e-2252.00hypothetical protein n=1 Tax=Miltoncostaea marina ... [more]
A0A537ZWA1_9ACTN3.130e-1233.52M28 family peptidase n=1 Tax=Actinomycetia bacteri... [more]
A0A538A1T5_9ACTN5.110e-1234.57M28 family peptidase (Fragment) n=1 Tax=Actinomyce... [more]
A0A2V2SG92_9BACT1.620e-833.53Peptidase_M28 domain-containing protein (Fragment)... [more]
A0A0F8YZ80_9ZZZZ1.140e-737.78Peptidase_M28 domain-containing protein (Fragment)... [more]
A0A7W1JZE7_9ACTN4.750e-738.46M28 family peptidase n=1 Tax=Actinomycetia bacteri... [more]
A0A538D870_9ACTN4.750e-732.96M28 family peptidase n=1 Tax=Actinomycetia bacteri... [more]
A0A177RAA2_9ACTN3.990e-635.26Peptidase_M28 domain-containing protein n=1 Tax=Ga... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig118032contigM-pyrifera_M_contig118032:3..551 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size549
Cds size549
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815700.277785-CDS-M-pyrifera_M_contig118032:2..5511622815700.277785-CDS-M-pyrifera_M_contig118032:2..551Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118032 3..551 -
1692277528.268672-CDS-M-pyrifera_M_contig118032:2..5511692277528.268672-CDS-M-pyrifera_M_contig118032:2..551Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118032 3..551 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig118032.3748.1prot_M-pyrifera_M_contig118032.3748.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig118032 3..551 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig118032.3748.1

>prot_M-pyrifera_M_contig118032.3748.1 ID=prot_M-pyrifera_M_contig118032.3748.1|Name=mRNA_M-pyrifera_M_contig118032.3748.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=183bp
TLQSPPAAPEPPLPTAFDGRAALEDAATLGAIAPERAPGTQGGERAADWV
REQLDDLPGVDGKVQEQAFSARSDGQMVGMRNVYVVVPGDGNGATRPAIL
VVAPRDTPAGVRSGASATGLLIALARQWATTTQEHPILFVSTDGSTAGNA
GVRWFLSRFSELKIGAAVVLDDPGARQGTGVSI
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mRNA from alignment at M-pyrifera_M_contig118032:3..551-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig118032.3748.1 ID=mRNA_M-pyrifera_M_contig118032.3748.1|Name=mRNA_M-pyrifera_M_contig118032.3748.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=549bp|location=Sequence derived from alignment at M-pyrifera_M_contig118032:3..551- (Macrocystis pyrifera P11B4 male)
ACCCTGCAGTCGCCCCCGGCTGCCCCGGAGCCGCCGCTCCCGACGGCCTT CGACGGGCGGGCCGCGCTCGAGGACGCCGCCACGCTCGGCGCCATCGCCC CCGAGCGCGCACCCGGGACCCAGGGGGGCGAGCGCGCCGCCGACTGGGTC CGCGAGCAGCTCGACGACCTGCCCGGGGTGGACGGGAAGGTCCAGGAGCA GGCCTTCAGCGCCCGCTCCGACGGGCAGATGGTCGGGATGCGCAACGTCT ACGTCGTCGTCCCCGGGGACGGGAACGGCGCGACCCGCCCCGCGATCCTG GTCGTGGCCCCTCGCGACACGCCCGCGGGCGTCCGCTCGGGCGCGTCGGC CACCGGGCTCCTGATCGCGCTGGCCCGGCAGTGGGCGACCACCACCCAGG AGCATCCGATCCTGTTCGTCTCGACCGACGGCTCGACCGCCGGGAACGCG GGCGTGCGCTGGTTCCTGTCGCGCTTCTCGGAGCTCAAGATCGGCGCCGC GGTCGTCCTGGACGACCCCGGCGCGCGCCAGGGCACGGGCGTGTCGATC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig118032:3..551-

>mRNA_M-pyrifera_M_contig118032.3748.1 ID=mRNA_M-pyrifera_M_contig118032.3748.1|Name=mRNA_M-pyrifera_M_contig118032.3748.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1098bp|location=Sequence derived from alignment at M-pyrifera_M_contig118032:3..551- (Macrocystis pyrifera P11B4 male)
ACCCTGCAGTCGCCCCCGGCTGCCCCGGAGCCGCCGCTCCCGACGGCCTT
CGACGGGCGGGCCGCGCTCGAGGACGCCGCCACGCTCGGCGCCATCGCCC
CCGAGCGCGCACCCGGGACCCAGGGGGGCGAGCGCGCCGCCGACTGGGTC
CGCGAGCAGCTCGACGACCTGCCCGGGGTGGACGGGAAGGTCCAGGAGCA
GGCCTTCAGCGCCCGCTCCGACGGGCAGATGGTCGGGATGCGCAACGTCT
ACGTCGTCGTCCCCGGGGACGGGAACGGCGCGACCCGCCCCGCGATCCTG
GTCGTGGCCCCTCGCGACACGCCCGCGGGCGTCCGCTCGGGCGCGTCGGC
CACCGGGCTCCTGATCGCGCTGGCCCGGCAGTGGGCGACCACCACCCAGG
AGCATCCGATCCTGTTCGTCTCGACCGACGGCTCGACCGCCGGGAACGCG
GGCGTGCGCTGGTTCCTGTCGCGCTTCTCGGAGCTCAAGATCGGCGCCGC
GGTCGTCCTGGACGACCCCGGCGCGCGCCAGGGCACGGGCGTGTCGATCA
CCCTGCAGTCGCCCCCGGCTGCCCCGGAGCCGCCGCTCCCGACGGCCTTC
GACGGGCGGGCCGCGCTCGAGGACGCCGCCACGCTCGGCGCCATCGCCCC
CGAGCGCGCACCCGGGACCCAGGGGGGCGAGCGCGCCGCCGACTGGGTCC
GCGAGCAGCTCGACGACCTGCCCGGGGTGGACGGGAAGGTCCAGGAGCAG
GCCTTCAGCGCCCGCTCCGACGGGCAGATGGTCGGGATGCGCAACGTCTA
CGTCGTCGTCCCCGGGGACGGGAACGGCGCGACCCGCCCCGCGATCCTGG
TCGTGGCCCCTCGCGACACGCCCGCGGGCGTCCGCTCGGGCGCGTCGGCC
ACCGGGCTCCTGATCGCGCTGGCCCGGCAGTGGGCGACCACCACCCAGGA
GCATCCGATCCTGTTCGTCTCGACCGACGGCTCGACCGCCGGGAACGCGG
GCGTGCGCTGGTTCCTGTCGCGCTTCTCGGAGCTCAAGATCGGCGCCGCG
GTCGTCCTGGACGACCCCGGCGCGCGCCAGGGCACGGGCGTGTCGATC
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