mRNA_M-pyrifera_M_contig118031.3747.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig118031.3747.1
Unique NamemRNA_M-pyrifera_M_contig118031.3747.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig118031.3747.1 vs. uniprot
Match: A0A7S1C4Y8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C4Y8_9STRA)

HSP 1 Score: 245 bits (625), Expect = 2.770e-72
Identity = 118/183 (64.48%), Postives = 150/183 (81.97%), Query Frame = 1 
Query:    1 RMLLLGERPLRLQVQYRMHPSLSAFPSDTFYEGSLQNGVSHADRSRDALPDLFPDPRKPLLFYSCASPEEIGASGTTFLNRGEASSVAKLLTYLLRAGIPGRAIGVVTPYEGQQHYLSDLLTRYAALPAARYADVEIASVDSFQGREKDYILVSCVRSNSASGLGFLADPRRLNVALTRAKYG 549
            R++LLG RP+RLQVQYRMHPSLS FPS+TFYEG+LQNGV+ A+R+  AL   +P P KP+ FY C S EEIG+SGT+FLNRGEA+SV K+++  LR+G+    IGV+TPYEGQ+ Y+   ++RY AL  + Y +VE+ASVDSFQGREKD+I++SCVRSN   G+GFL+DPRRLNVALTRA+YG
Sbjct:  672 RLVLLGIRPIRLQVQYRMHPSLSEFPSNTFYEGTLQNGVTIAERTMSALDLQWPVPNKPMFFYICTSAEEIGSSGTSFLNRGEAASVEKIVSSFLRSGVRPSQIGVITPYEGQRAYVVQYMSRYGALRQSLYENVEVASVDSFQGREKDFIILSCVRSNEHQGIGFLSDPRRLNVALTRARYG 854
[Close]
BLAST of mRNA_M-pyrifera_M_contig118031.3747.1 vs. uniprot
Match: A0A7S0DTD7_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DTD7_9EUKA)

HSP 1 Score: 236 bits (601), Expect = 8.220e-70
Identity = 114/183 (62.30%), Postives = 143/183 (78.14%), Query Frame = 1 
Query:    1 RMLLLGERPLRLQVQYRMHPSLSAFPSDTFYEGSLQNGVSHADRSRDALPDLFPDPRKPLLFYSCASPEEIGASGTTFLNRGEASSVAKLLTYLLRAGIPGRAIGVVTPYEGQQHYLSDLLTRYAALPAARYADVEIASVDSFQGREKDYILVSCVRSNSASGLGFLADPRRLNVALTRAKYG 549
            R++LLG RP+RLQVQYRMHP+LS FPS+TFYEGSLQNGV+  +R R  LP  +P P KP++FY     EE  ASGT+FLNR EA++V K++T  LR G+    IG+VTPYEGQ+ YL   + ++ +L  + Y D+E+ASVDSFQGREKDYI++SCVRSN   G+GFLADPRR+NVALTRAKYG
Sbjct:  426 RLILLGIRPVRLQVQYRMHPALSEFPSNTFYEGSLQNGVTAEERRRPNLPFQWPVPEKPMMFYRSTGAEEYAASGTSFLNRTEAANVEKIVTEFLRCGVNPDQIGIVTPYEGQRAYLVSYMAQFGSLRKSLYDDIEVASVDSFQGREKDYIVLSCVRSNERQGIGFLADPRRMNVALTRAKYG 608
[Close]
BLAST of mRNA_M-pyrifera_M_contig118031.3747.1 vs. uniprot
Match: A0A7S2EC69_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EC69_TRICV)

HSP 1 Score: 230 bits (587), Expect = 1.170e-69
Identity = 113/190 (59.47%), Postives = 146/190 (76.84%), Query Frame = 1 
Query:    1 RMLLLGERPLRLQVQYRMHPSLSAFPSDTFYEGSLQNGVSHADRSRDALPDL-------FPDPRKPLLFYSCASPEEIGASGTTFLNRGEASSVAKLLTYLLRAGIPGRAIGVVTPYEGQQHYLSDLLTRYAALPAARYADVEIASVDSFQGREKDYILVSCVRSNSASGLGFLADPRRLNVALTRAKYG 549
            R++L+G RP+RLQVQYRMHPSLS FPS+ FYEGSLQNG++ ADR   ++P         +P P KP+ FYS    EEI ASGT++LNR EAS V K++T+LLR G+  + IGV+TPY+GQ+ Y S+ + R  +L AA Y  +E+ASVD+FQGREKD+ILVSCVRS+ + G+GFL+DPRRLNVALTRA+ G
Sbjct:  323 RLVLIGIRPIRLQVQYRMHPSLSEFPSNMFYEGSLQNGITEADRKLLSMPSFKGKEDFPWPVPNKPMFFYSITGMEEISASGTSYLNRTEASYVEKIVTHLLRIGVTPQQIGVITPYDGQKKYTSEYMRRSGSLAAALYESIEVASVDAFQGREKDFILVSCVRSSESQGIGFLSDPRRLNVALTRARLG 512
[Close]
BLAST of mRNA_M-pyrifera_M_contig118031.3747.1 vs. uniprot
Match: A0A7J6UH29_PEROL (ATP-dependent helicase NAM7 n=5 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6UH29_PEROL)

HSP 1 Score: 226 bits (576), Expect = 1.200e-69
Identity = 109/183 (59.56%), Postives = 137/183 (74.86%), Query Frame = 1 
Query:    1 RMLLLGERPLRLQVQYRMHPSLSAFPSDTFYEGSLQNGVSHADRSRDALPDLFPDPRKPLLFYSCASPEEIGASGTTFLNRGEASSVAKLLTYLLRAGIPGRAIGVVTPYEGQQHYLSDLLTRYAALPAARYADVEIASVDSFQGREKDYILVSCVRSNSASGLGFLADPRRLNVALTRAKYG 549
            R++ LG RP+RL+VQYRMHPSL+ FPS TFY+G LQNG++  DR    +   +P    P+ FY+    EEI ASGT++LNR EA ++ K+LTY LRAG+ G  IGVVTPYEGQ+ Y+  +L R   L A  Y  +EIASVD+FQGREKD+I++SCVRSN  +GLGFL DPRRLNVALTRA+YG
Sbjct:   51 RLIALGVRPIRLEVQYRMHPSLAEFPSQTFYDGCLQNGITMEDRQVSGVKFPWPREEMPMFFYNSTGQEEISASGTSYLNRSEAINIEKILTYFLRAGLKGSQIGVVTPYEGQRAYIQQVLQRQTTLSAKLYETIEIASVDAFQGREKDFIVLSCVRSNQRAGLGFLNDPRRLNVALTRARYG 233
[Close]
BLAST of mRNA_M-pyrifera_M_contig118031.3747.1 vs. uniprot
Match: A0A7S3CZL2_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3CZL2_9EUKA)

HSP 1 Score: 233 bits (593), Expect = 1.850e-69
Identity = 112/183 (61.20%), Postives = 145/183 (79.23%), Query Frame = 1 
Query:    1 RMLLLGERPLRLQVQYRMHPSLSAFPSDTFYEGSLQNGVSHADRSRDALPDLFPDPRKPLLFYSCASPEEIGASGTTFLNRGEASSVAKLLTYLLRAGIPGRAIGVVTPYEGQQHYLSDLLTRYAALPAARYADVEIASVDSFQGREKDYILVSCVRSNSASGLGFLADPRRLNVALTRAKYG 549
            R+LL+G RP+RLQVQYRMHP LS FPS TFYEGSL NGV+HA+RS++ +   +P P +P++FY+CA  EEI ASGT++LNR E+S+V K++T LLR G     IG++TPYEGQ+ ++   L R   L  + Y ++E+ASVDSFQGREKDYI++SCVRS+   G+GFL+DPRRLNVALTRAKYG
Sbjct:  529 RLLLIGNRPIRLQVQYRMHPCLSQFPSHTFYEGSLLNGVTHAERSQNGVDFPWPLPSRPMMFYNCAGMEEISASGTSYLNRAESSTVEKVVTALLRGGAIPSQIGIITPYEGQRAHIVAHLQRAGTLKGSFYEEIEVASVDSFQGREKDYIILSCVRSSDHMGIGFLSDPRRLNVALTRAKYG 711
[Close]
BLAST of mRNA_M-pyrifera_M_contig118031.3747.1 vs. uniprot
Match: UPI000C1CEACB (regulator of nonsense transcripts 1 homolog n=1 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1CEACB)

HSP 1 Score: 220 bits (561), Expect = 2.370e-69
Identity = 105/183 (57.38%), Postives = 141/183 (77.05%), Query Frame = 1 
Query:    1 RMLLLGERPLRLQVQYRMHPSLSAFPSDTFYEGSLQNGVSHADRSRDALPDLFPDPRKPLLFYSCASPEEIGASGTTFLNRGEASSVAKLLTYLLRAGIPGRAIGVVTPYEGQQHYLSDLLTRYAALPAARYADVEIASVDSFQGREKDYILVSCVRSNSASGLGFLADPRRLNVALTRAKYG 549
            R++LLG +P+RLQVQYRMHP+LS FPS++FYEG+LQNGV+  +R    +   +P P +P+ FY     EEI ASGT++LNR EA++V K++T  L++G+    IGV+TPYEGQ+ Y+ + ++R  AL    Y ++E+ASVDSFQGREKDYI++SCVRSN   G+GFL DPRRLNVALTRA+YG
Sbjct:   17 RLVLLGVKPIRLQVQYRMHPALSEFPSNSFYEGTLQNGVTINERQSPGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLKSGVVSNQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYG 199
[Close]
BLAST of mRNA_M-pyrifera_M_contig118031.3747.1 vs. uniprot
Match: A0A7S1FMA1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FMA1_9STRA)

HSP 1 Score: 220 bits (560), Expect = 1.540e-68
Identity = 113/190 (59.47%), Postives = 142/190 (74.74%), Query Frame = 1 
Query:    1 RMLLLGERPLRLQVQYRMHPSLSAFPSDTFYEGSLQNGVSHADRSRDALPDL-----FPDP--RKPLLFYSCASPEEIGASGTTFLNRGEASSVAKLLTYLLRAGIPGRAIGVVTPYEGQQHYLSDLLTRYAALPAARYADVEIASVDSFQGREKDYILVSCVRSNSASGLGFLADPRRLNVALTRAKYG 549
            R++LLG RP+RLQVQYRMHP+LS FPS+ FYEGSLQNGV+ ADR     P       FP P   KP+ FY     EEI ASGT+FLNR EAS V KL+T+ LR G+    IGV+TPY+GQ+ Y++D + R  +L AA Y  +E+ASVD+FQGREKD+I+VSCVR++ + G+GFL+DPRRLNVALTRA+ G
Sbjct:  100 RLVLLGIRPIRLQVQYRMHPALSEFPSNMFYEGSLQNGVTEADRQLLTTPGFGGKEDFPWPVDNKPMFFYCIWGMEEISASGTSFLNRTEASYVEKLVTHFLRMGVSPLQIGVITPYDGQRKYVTDFMRRSGSLSAATYDLIEVASVDAFQGREKDFIIVSCVRASDSQGIGFLSDPRRLNVALTRARLG 289
[Close]
BLAST of mRNA_M-pyrifera_M_contig118031.3747.1 vs. uniprot
Match: A0A8J6CCZ7_DIALT (Uncharacterized protein n=3 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CCZ7_DIALT)

HSP 1 Score: 233 bits (593), Expect = 3.000e-68
Identity = 114/183 (62.30%), Postives = 143/183 (78.14%), Query Frame = 1 
Query:    1 RMLLLGERPLRLQVQYRMHPSLSAFPSDTFYEGSLQNGVSHADRSRDALPDLFPDPRKPLLFYSCASPEEIGASGTTFLNRGEASSVAKLLTYLLRAGIPGRAIGVVTPYEGQQHYLSDLLTRYAALPAARYADVEIASVDSFQGREKDYILVSCVRSNSASGLGFLADPRRLNVALTRAKYG 549
            R++ LG RPLRL VQYRMHPSLS FPS TFYEGSLQNGV+H  R    +P  + D R P+LFY+   PEEI ASGT++LNR EA++V K++T+LL+AG+    +GV+TPYEGQ+ +LS  + R   L    YA++E+ASVD+FQGREKD+IL+SCVRSN   GLGF++DPRRLNVALTRAKYG
Sbjct:  657 RLITLGHRPLRLNVQYRMHPSLSEFPSVTFYEGSLQNGVAHEQRVMAHVPFPWLDTRTPMLFYASMGPEEISASGTSYLNRAEAANVEKVVTHLLKAGLNPAQLGVITPYEGQRAFLSTYMLRQGILRHELYAELEVASVDAFQGREKDFILLSCVRSNEGQGLGFVSDPRRLNVALTRAKYG 839
[Close]
BLAST of mRNA_M-pyrifera_M_contig118031.3747.1 vs. uniprot
Match: C5LT15_PERM5 (Uncharacterized protein (Fragment) n=1 Tax=Perkinsus marinus (strain ATCC 50983 / TXsc) TaxID=423536 RepID=C5LT15_PERM5)

HSP 1 Score: 226 bits (576), Expect = 3.110e-68
Identity = 108/183 (59.02%), Postives = 137/183 (74.86%), Query Frame = 1 
Query:    1 RMLLLGERPLRLQVQYRMHPSLSAFPSDTFYEGSLQNGVSHADRSRDALPDLFPDPRKPLLFYSCASPEEIGASGTTFLNRGEASSVAKLLTYLLRAGIPGRAIGVVTPYEGQQHYLSDLLTRYAALPAARYADVEIASVDSFQGREKDYILVSCVRSNSASGLGFLADPRRLNVALTRAKYG 549
            R++ LG RP+RL+VQYRMHPSL+ FPS TFY+G LQNG++  DR    +   +P    P+ FY+    EEI ASGT++LNR EA ++ K++TY LRAG+ G  IGVVTPYEGQ+ Y+  +L R   L A  Y  +EIASVD+FQGREKD+I++SCVRSN  +GLGFL DPRRLNVALTRA+YG
Sbjct:  234 RLIALGVRPIRLEVQYRMHPSLAEFPSQTFYDGCLQNGITMEDRQVSGVKFPWPREEMPMFFYNSTGQEEISASGTSYLNRSEAINIEKIITYFLRAGLKGSQIGVVTPYEGQRAYIQQVLQRQTTLSAKMYESIEIASVDAFQGREKDFIVLSCVRSNQRAGLGFLNDPRRLNVALTRARYG 416
[Close]
BLAST of mRNA_M-pyrifera_M_contig118031.3747.1 vs. uniprot
Match: A0A7S4RIG1_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RIG1_9STRA)

HSP 1 Score: 224 bits (572), Expect = 3.310e-68
Identity = 111/190 (58.42%), Postives = 143/190 (75.26%), Query Frame = 1 
Query:    1 RMLLLGERPLRLQVQYRMHPSLSAFPSDTFYEGSLQNGVSHADRSRDALPDL-------FPDPRKPLLFYSCASPEEIGASGTTFLNRGEASSVAKLLTYLLRAGIPGRAIGVVTPYEGQQHYLSDLLTRYAALPAARYADVEIASVDSFQGREKDYILVSCVRSNSASGLGFLADPRRLNVALTRAKYG 549
            R++L+G RP+RLQVQYRMHP+LS FPS+ FYEGSLQNG++ ADR    LP         +P P KP+ FY     EEI ASGT++LNR EAS V K++T+LLR G+    IGV+TPY+GQ+ Y+S+ + R   L +A Y  +E+ASVD+FQGREKD+ILVSCVRS+ + G+GFL+DPRRLNVALTRA+ G
Sbjct:   85 RLVLIGIRPIRLQVQYRMHPALSEFPSNMFYEGSLQNGITEADRQLLTLPGFSGKEDFPWPVPNKPMFFYCITGMEEISASGTSYLNRTEASYVEKVVTHLLRMGVTPAQIGVITPYDGQKKYVSEYMRRSGCLASALYEAIEVASVDAFQGREKDFILVSCVRSSESQGIGFLSDPRRLNVALTRARLG 274
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig118031.3747.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1C4Y8_9STRA2.770e-7264.48Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A7S0DTD7_9EUKA8.220e-7062.30Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
A0A7S2EC69_TRICV1.170e-6959.47Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A7J6UH29_PEROL1.200e-6959.56ATP-dependent helicase NAM7 n=5 Tax=Perkinsus olse... [more]
A0A7S3CZL2_9EUKA1.850e-6961.20Hypothetical protein (Fragment) n=1 Tax=Palpitomon... [more]
UPI000C1CEACB2.370e-6957.38regulator of nonsense transcripts 1 homolog n=1 Ta... [more]
A0A7S1FMA1_9STRA1.540e-6859.47Hypothetical protein (Fragment) n=1 Tax=Corethron ... [more]
A0A8J6CCZ7_DIALT3.000e-6862.30Uncharacterized protein n=3 Tax=Diacronema lutheri... [more]
C5LT15_PERM53.110e-6859.02Uncharacterized protein (Fragment) n=1 Tax=Perkins... [more]
A0A7S4RIG1_9STRA3.310e-6858.42Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig118031contigM-pyrifera_M_contig118031:3..551 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score225.7
Seed ortholog evalue1.7e-56
Seed eggNOG ortholog6500.XP_005098577.1
Preferred nameUPF1
KEGG koko:K14326
KEGG Pathwayko03013,ko03015,map03013,map03015
KEGG ModuleM00430
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000184,GO:0000228,GO:0000294,GO:0000723,GO:0000781,GO:0000784,GO:0000785,GO:0000932,GO:0000956,GO:0001666,GO:0002237,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005694,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006401,GO:0006402,GO:0006403,GO:0006405,GO:0006406,GO:0006417,GO:0006449,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007275,GO:0007548,GO:0007549,GO:0008026,GO:0008104,GO:0008150,GO:0008152,GO:0008186,GO:0008334,GO:0009048,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009605,GO:0009607,GO:0009617,GO:0009628,GO:0009653,GO:0009790,GO:0009887,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010608,GO:0010629,GO:0015031,GO:0015833,GO:0015931,GO:0016043,GO:0016070,GO:0016071,GO:0016246,GO:0016441,GO:0016458,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017148,GO:0019219,GO:0019222,GO:0019439,GO:0019725,GO:0019899,GO:0019902,GO:0019903,GO:0022402,GO:0022414,GO:0030538,GO:0031047,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031329,GO:0031331,GO:0031503,GO:0031974,GO:0031981,GO:0032200,GO:0032201,GO:0032204,GO:0032268,GO:0032269,GO:0032496,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033260,GO:0033554,GO:0033993,GO:0034097,GO:0034248,GO:0034249,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0035112,GO:0035145,GO:0035194,GO:0035770,GO:0036293,GO:0036294,GO:0036464,GO:0040029,GO:0042162,GO:0042221,GO:0042592,GO:0042623,GO:0042886,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043244,GO:0043487,GO:0043488,GO:0043565,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044530,GO:0044770,GO:0044786,GO:0045184,GO:0045935,GO:0046483,GO:0046700,GO:0046907,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048562,GO:0048568,GO:0048598,GO:0048608,GO:0048731,GO:0048806,GO:0048856,GO:0050657,GO:0050658,GO:0050779,GO:0050789,GO:0050794,GO:0050896,GO:0051028,GO:0051052,GO:0051128,GO:0051168,GO:0051169,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051234,GO:0051236,GO:0051246,GO:0051248,GO:0051252,GO:0051254,GO:0051276,GO:0051641,GO:0051649,GO:0051704,GO:0051707,GO:0051716,GO:0051721,GO:0060249,GO:0060255,GO:0061013,GO:0061014,GO:0061157,GO:0061158,GO:0061458,GO:0065007,GO:0065008,GO:0070013,GO:0070035,GO:0070482,GO:0070555,GO:0070727,GO:0070887,GO:0071025,GO:0071027,GO:0071028,GO:0071030,GO:0071044,GO:0071166,GO:0071216,GO:0071219,GO:0071222,GO:0071310,GO:0071345,GO:0071347,GO:0071396,GO:0071426,GO:0071427,GO:0071453,GO:0071456,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0098687,GO:0140098,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1901576,GO:1901700,GO:1901701,GO:1903311,GO:1903313,GO:1990904,GO:2000112,GO:2000113,GO:2000622,GO:2000624
EggNOG free text desc.nuclear-transcribed mRNA catabolic process, endonucleolytic cleavage-dependent decay
EggNOG OGs38BMD@33154,3BB1B@33208,3CU8B@33213,COG1112@1,KOG1802@2759
COG Functional cat.L
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03019
Exons1
Model size549
Cds size546
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815700.2298732-UTR-M-pyrifera_M_contig118031:2..51622815700.2298732-UTR-M-pyrifera_M_contig118031:2..5Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig118031 3..5 +
1692277528.2417974-UTR-M-pyrifera_M_contig118031:2..51692277528.2417974-UTR-M-pyrifera_M_contig118031:2..5Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig118031 3..5 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815700.2443786-CDS-M-pyrifera_M_contig118031:5..5511622815700.2443786-CDS-M-pyrifera_M_contig118031:5..551Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118031 6..551 +
1692277528.2552419-CDS-M-pyrifera_M_contig118031:5..5511692277528.2552419-CDS-M-pyrifera_M_contig118031:5..551Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118031 6..551 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig118031.3747.1prot_M-pyrifera_M_contig118031.3747.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig118031 6..551 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig118031.3747.1

>prot_M-pyrifera_M_contig118031.3747.1 ID=prot_M-pyrifera_M_contig118031.3747.1|Name=mRNA_M-pyrifera_M_contig118031.3747.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=182bp
MLLLGERPLRLQVQYRMHPSLSAFPSDTFYEGSLQNGVSHADRSRDALPD
LFPDPRKPLLFYSCASPEEIGASGTTFLNRGEASSVAKLLTYLLRAGIPG
RAIGVVTPYEGQQHYLSDLLTRYAALPAARYADVEIASVDSFQGREKDYI
LVSCVRSNSASGLGFLADPRRLNVALTRAKYG
back to top

mRNA from alignment at M-pyrifera_M_contig118031:3..551+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig118031.3747.1 ID=mRNA_M-pyrifera_M_contig118031.3747.1|Name=mRNA_M-pyrifera_M_contig118031.3747.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=549bp|location=Sequence derived from alignment at M-pyrifera_M_contig118031:3..551+ (Macrocystis pyrifera P11B4 male)
CGCATGTTGTTGCTGGGAGAACGACCTCTGCGACTCCAAGTGCAGTACCG
CATGCATCCTTCGCTCTCCGCTTTCCCATCCGATACTTTCTATGAAGGCT
CTTTGCAAAACGGAGTTTCTCACGCGGACCGATCCAGAGATGCTCTGCCT
GATCTTTTTCCTGACCCCCGCAAACCACTCCTCTTCTACAGCTGCGCTTC
GCCAGAGGAAATTGGAGCCAGCGGCACCACCTTCCTCAACCGTGGAGAAG
CGTCGTCAGTGGCAAAGCTCCTCACCTACCTCTTGCGCGCAGGCATTCCT
GGCCGAGCCATCGGGGTGGTCACACCCTATGAGGGGCAGCAGCACTACCT
CTCCGACCTCCTCACTCGCTACGCAGCACTCCCTGCTGCTCGCTACGCTG
ACGTGGAGATTGCGAGTGTGGATTCGTTCCAGGGCCGCGAAAAAGACTAC
ATCCTCGTATCGTGTGTCAGGTCGAATTCTGCATCTGGGCTTGGGTTCCT
CGCTGATCCTCGGAGACTGAACGTGGCTCTTACTCGAGCAAAGTATGGC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig118031:3..551+

>mRNA_M-pyrifera_M_contig118031.3747.1 ID=mRNA_M-pyrifera_M_contig118031.3747.1|Name=mRNA_M-pyrifera_M_contig118031.3747.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1092bp|location=Sequence derived from alignment at M-pyrifera_M_contig118031:3..551+ (Macrocystis pyrifera P11B4 male)
ATGTTGTTGCTGGGAGAACGACCTCTGCGACTCCAAGTGCAGTACCGCAT
GCATCCTTCGCTCTCCGCTTTCCCATCCGATACTTTCTATGAAGGCTCTT
TGCAAAACGGAGTTTCTCACGCGGACCGATCCAGAGATGCTCTGCCTGAT
CTTTTTCCTGACCCCCGCAAACCACTCCTCTTCTACAGCTGCGCTTCGCC
AGAGGAAATTGGAGCCAGCGGCACCACCTTCCTCAACCGTGGAGAAGCGT
CGTCAGTGGCAAAGCTCCTCACCTACCTCTTGCGCGCAGGCATTCCTGGC
CGAGCCATCGGGGTGGTCACACCCTATGAGGGGCAGCAGCACTACCTCTC
CGACCTCCTCACTCGCTACGCAGCACTCCCTGCTGCTCGCTACGCTGACG
TGGAGATTGCGAGTGTGGATTCGTTCCAGGGCCGCGAAAAAGACTACATC
CTCGTATCGTGTGTCAGGTCGAATTCTGCATCTGGGCTTGGGTTCCTCGC
TGATCCTCGGAGACTGAACGTGGCTCTTACTCGAGCAAAGTATGGCATGT
TGTTGCTGGGAGAACGACCTCTGCGACTCCAAGTGCAGTACCGCATGCAT
CCTTCGCTCTCCGCTTTCCCATCCGATACTTTCTATGAAGGCTCTTTGCA
AAACGGAGTTTCTCACGCGGACCGATCCAGAGATGCTCTGCCTGATCTTT
TTCCTGACCCCCGCAAACCACTCCTCTTCTACAGCTGCGCTTCGCCAGAG
GAAATTGGAGCCAGCGGCACCACCTTCCTCAACCGTGGAGAAGCGTCGTC
AGTGGCAAAGCTCCTCACCTACCTCTTGCGCGCAGGCATTCCTGGCCGAG
CCATCGGGGTGGTCACACCCTATGAGGGGCAGCAGCACTACCTCTCCGAC
CTCCTCACTCGCTACGCAGCACTCCCTGCTGCTCGCTACGCTGACGTGGA
GATTGCGAGTGTGGATTCGTTCCAGGGCCGCGAAAAAGACTACATCCTCG
TATCGTGTGTCAGGTCGAATTCTGCATCTGGGCTTGGGTTCCTCGCTGAT
CCTCGGAGACTGAACGTGGCTCTTACTCGAGCAAAGTATGGC
back to top