mRNA_M-pyrifera_M_contig1180.3737.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig1180.3737.1
Unique NamemRNA_M-pyrifera_M_contig1180.3737.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig1180.3737.1 vs. uniprot
Match: D7FJT0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJT0_ECTSI)

HSP 1 Score: 281 bits (718), Expect = 1.810e-89
Identity = 162/350 (46.29%), Postives = 208/350 (59.43%), Query Frame = 1 
Query:    1 RSTLLGGVRRRPTSPLSPVSRTYNDVPARESRGGEPLRTGEAAVAVLADRRSGD----VAPEEWVKVSWKKGECRDEIKLVAEAAGLGFEAAQIVALRLYNHFYWLTELRERSEKLFATIARERRFSLSLVAHPSTIAAAEAFPHDSAADDNDAHYSHQRGGTVSAAQPTTGASGHRASNDFSRYIKGLCALCNNGNFDQTSAMLFRAYSKAADDCVITRDEVATVLAYHVEYADSEDPTIEQERAYRWLKRQFIQLIATTSE------ASQTVDNRGQRGAAISVAGSFREPGVGGXXXXXXXXAISWESARQLLRRGPPCLESSLVIDLSRLSKDLWAADIVDVERTS 1020
            R TL G  +R P SPLSPV  +    P    R GE     EA    LA+ R+G     +  EEWVKVSWKKGECR+EIKL+AEA+GL F+ A+IVALRLYNHF WL +L+ERSE+L A + RERR SL+LV +       EAF    A+    +           +     G         F+RY+KG+C +CN G+FDQ   +LFRAYS A DDC ITR+E+A +L+ HV Y DSEDPT E++R YRWLKRQF+ L  T         A+ T+ + G     ++ AG +++ G            I W+SAR+LLRRGP  L  S  +DL  LSKDLW+AD+VD+ RTS
Sbjct:   17 RYTLAGSAQRPPFSPLSPVHHSCT-APEEGCREGEGRWKSEAQETPLAEARTGGDLSALEQEEWVKVSWKKGECREEIKLIAEASGLAFDDARIVALRLYNHFNWLPQLQERSEQLLAVVGRERRLSLTLVRN-------EAFALSQASATQKSMTGRDEAAKTGSYGAAEGGGCDTTKEQFNRYVKGMCVVCNEGSFDQVLDLLFRAYSTARDDCTITRNEMAAILSKHVVYEDSEDPTEEKDRVYRWLKRQFVHLAPTACRTTNLGTATTTITSSGD----VAAAGRYQDGG----------GCIGWDSARELLRRGPQRLVDSFAVDLPCLSKDLWSADLVDLGRTS 344
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BLAST of mRNA_M-pyrifera_M_contig1180.3737.1 vs. uniprot
Match: A0A6H5L3R7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3R7_9PHAE)

HSP 1 Score: 257 bits (657), Expect = 1.390e-79
Identity = 164/406 (40.39%), Postives = 214/406 (52.71%), Query Frame = 1 
Query:    1 RSTLLGGVRRRPTSPLSPVSRTYNDVPARESRGGEPLRTGEAAVAVLADRRSGD----VAPEEWVKVSWKKGECRDEIKLVAEAAGLGFEAAQIVALRLYNHFYWLTELRERSEKLFATIARERRFSLSLVAHPSTIAAAEAFPHDSAADDNDAHYSHQRGGTVSAAQPTTGASGHRASNDFSRYIKGLCALCNNGNFDQTSAMLFRAYSKAADDCVITRDEVATVLAYHVEYADSE------------------------------------------------------------DPTIEQERAYRWLKRQFIQLIATTSEASQ--TVDNRGQRGAAISVAGSFREPGVGGXXXXXXXXAISWESARQLLRRGPPCLESSLVIDLSRLSKDLWAADIVDVERTS 1020
            R TL G  +R P SPLSPV R+    P    R GE     EA     A+ R+G     +  EEWVKVSWKKGECR+EIKL+AEA+GL F+ A+IVALRLYNHF WL +L+ERSE+L   I RERR  L+LV + +   +  +  H + A  ++A     + G+  AA+   G         F+RY+KG+C +CN G+FDQ   +LFRAYS A DDC ITR+E+A +L+ HV Y DSE                                                            DPT E++R YRWLKRQF+ L  TTS  +   T          ++ AG ++E G            +SW+SAR+LLRRGP  L  SL +DL  LSKDLW+AD+VD+ RT+
Sbjct:   11 RYTLSGSAQRPPFSPLSPVHRSCI-APEEGCREGEGRWNSEAQETQPAEARTGGDLSALEQEEWVKVSWKKGECREEIKLIAEASGLAFDDARIVALRLYNHFNWLLQLQERSEQLLVVIGRERRLFLTLVRNEALALSQASATHKAMAGRDEA----AKTGSYGAAE---GGGCDTTKEQFNRYVKGMCVVCNEGSFDQVLDLLFRAYSTARDDCTITRNEMAAILSKHVVYEDSEGLYLKFFWCVAVNNMRSSFAETPWEREPMDITHSSSSADCPNVRRHQTLTCAKTCAKPQQDPTEEKDRVYRWLKRQFVHLAPTTSRTTNLGTATTMIASSGHVAAAGKYQEGG----------GCVSWDSARELLRRGPQRLMDSLAVDLPCLSKDLWSADLVDLGRTN 398
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig1180.3737.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FJT0_ECTSI1.810e-8946.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L3R7_9PHAE1.390e-7940.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig1180contigM-pyrifera_M_contig1180:3321..6415 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-06_010290.1
Exons4
Model size1020
Cds size1020
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig1180.3737.1prot_M-pyrifera_M_contig1180.3737.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig1180 3321..6415 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815699.42789-CDS-M-pyrifera_M_contig1180:3320..35931622815699.42789-CDS-M-pyrifera_M_contig1180:3320..3593Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1180 3321..3593 +
1692277527.87871-CDS-M-pyrifera_M_contig1180:3320..35931692277527.87871-CDS-M-pyrifera_M_contig1180:3320..3593Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1180 3321..3593 +
1622815699.4397395-CDS-M-pyrifera_M_contig1180:4566..47671622815699.4397395-CDS-M-pyrifera_M_contig1180:4566..4767Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1180 4567..4767 +
1692277527.8880863-CDS-M-pyrifera_M_contig1180:4566..47671692277527.8880863-CDS-M-pyrifera_M_contig1180:4566..4767Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1180 4567..4767 +
1622815699.4518766-CDS-M-pyrifera_M_contig1180:5119..53441622815699.4518766-CDS-M-pyrifera_M_contig1180:5119..5344Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1180 5120..5344 +
1692277527.897926-CDS-M-pyrifera_M_contig1180:5119..53441692277527.897926-CDS-M-pyrifera_M_contig1180:5119..5344Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1180 5120..5344 +
1622815699.4638612-CDS-M-pyrifera_M_contig1180:6094..64151622815699.4638612-CDS-M-pyrifera_M_contig1180:6094..6415Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1180 6095..6415 +
1692277527.9088845-CDS-M-pyrifera_M_contig1180:6094..64151692277527.9088845-CDS-M-pyrifera_M_contig1180:6094..6415Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1180 6095..6415 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig1180.3737.1

>prot_M-pyrifera_M_contig1180.3737.1 ID=prot_M-pyrifera_M_contig1180.3737.1|Name=mRNA_M-pyrifera_M_contig1180.3737.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=340bp
RSTLLGGVRRRPTSPLSPVSRTYNDVPARESRGGEPLRTGEAAVAVLADR
RSGDVAPEEWVKVSWKKGECRDEIKLVAEAAGLGFEAAQIVALRLYNHFY
WLTELRERSEKLFATIARERRFSLSLVAHPSTIAAAEAFPHDSAADDNDA
HYSHQRGGTVSAAQPTTGASGHRASNDFSRYIKGLCALCNNGNFDQTSAM
LFRAYSKAADDCVITRDEVATVLAYHVEYADSEDPTIEQERAYRWLKRQF
IQLIATTSEASQTVDNRGQRGAAISVAGSFREPGVGGGSGGGGGGAISWE
SARQLLRRGPPCLESSLVIDLSRLSKDLWAADIVDVERTS
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mRNA from alignment at M-pyrifera_M_contig1180:3321..6415+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig1180.3737.1 ID=mRNA_M-pyrifera_M_contig1180.3737.1|Name=mRNA_M-pyrifera_M_contig1180.3737.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=3095bp|location=Sequence derived from alignment at M-pyrifera_M_contig1180:3321..6415+ (Macrocystis pyrifera P11B4 male)
CGAAGCACCTTGCTAGGGGGGGTACGACGTCGACCCACCAGTCCGTTGTC
TCCCGTCAGTCGAACGTACAACGACGTCCCCGCCAGAGAGAGTCGGGGGG
GCGAGCCATTGAGGACGGGAGAGGCAGCTGTAGCAGTGCTGGCGGATAGA
CGAAGCGGAGACGTAGCGCCAGAGGAGTGGGTGAAAGTGTCGTGGAAAAA
GGGGGAGTGCAGGGATGAGATCAAGCTGGTTGCCGAGGCTGCTGGTCTGG
GGTTCGAGGCCGCTCAAATTGTGGTGAGGCTTGACGACATCAACCATGAG
CGTTTCCCGCCCACAGTAGTCTTAGCCTCACAAACGTACCAACGCAGAAC
GAGTACGTAGTGTTCGTCGTTATCCGTGCGAGACTCAAACGTGGGGCTCG
TTCACCCTGCGTAGTTTATTCCCAGGCATTGCCGAGGTCGGTAGTCTCAG
TCGAGGCGCAAAAATCGCACCATATGGACTGAGTCATGCGTCGCCATCAG
ACGTCAAGTCGCGCCCCACTTGTGGCAGGAGTCTCGGACGCCCTGTGCAC
GGGTGAGTGGTATGGGTAGAGCTCGAGCTCGAAACCCTTTTCCCCTCGCT
GTAATATTTTCTCCTGAACATCGCTACGTATGATATATATCACTTTTTTG
CACGAAGCTCCGAATCAGTTAACGATAAAGATGGAAGACCTGCGCTTCTC
AGACCAACCCTATAAACAAAGTAATCTCTCAAGATTCATCCAGAATCCCG
AGAACTTTCGCGCCTGTCAAGCAGTACATTGCGAACAACTACGAGTACAT
AGGTATCGTATTTGCACATTTGTACTAAAAAAATACGAAAAGGCGGGTAA
TCCGGCGCTTCGGGAAGGATCTGCGGGGAGGACAGGTGTGCCGTTGCGGT
GTCATCGGCATCAGTTGCATCTCCTCGTTCGTGTGGTAGACGAGTACGAG
CTATTATGTTTCTTCTTGTCACGAAACATCGCAAAAGCAATGCATGGGTG
GGTCTCCCGTTAAGCTTACGCACCTGCTACTACTGTACGAAATGGATGGG
GTGTCAGGCAGGCCACCTTCGTCGTCCACAGAGATCCATCCGGTGTAAAG
GCGGGTCGCTGCCCTGTCGCGCATGCTTTTCAAATTTAGTCAACTTTTAA
ATCTCGTTATGTTGGAATATTCAGAAAACCCCTACTGGTACGAAACCTGC
ACCATCAAATCCCAGTACATTACATGCGTGCCCTCGGTTTGAACAGGCCC
TTCGTCTATACAACCACTTCTACTGGCTGACGGAGCTACGAGAACGCTCG
GAGAAGTTGTTTGCCACGATAGCCCGGGAGAGGCGTTTCTCGCTCTCTCT
CGTTGCACATCCATCCACCATCGCCGCAGCGGAAGCTTTTCCTCACGACA
GCGCAGCTGATGACAACGACGCACATTACTCTCACCAGAGGGGGGGGGTA
GATGACGAGGTGATCGCCGAGAGGGGGCTTAGGGGGGTCACCGTTAGTAC
TGACTGTACTCGTCGAAGACGCTGTTCGCTTTACTTGGACATCGTATTTG
TTTGTCTCATTTGTGTAACGGTATGTAGTCGGCATATGGCCTACACAGAA
TGCGCCGTGGCGTGTTATCTATGGGCTTGCCTGCAATTGCGCCAAGTATA
TTTTGCAGCAGTTCGATGATTGCAAACAGCGTCCGCACGAGCAATATCTA
CGTCACGCTTCCGTTAAAAAAAATGACCCGATGTTGAATAATACAGCCCC
TCCCTTTGTTTCCCCGCCCCCGCCTACTCAACATGCGCTGAAAGTGTAGA
CAGTGAGCGCTGCACAACCGACGACGGGGGCAAGCGGCCATCGCGCAAGC
AACGACTTCAGCCGCTACATCAAGGGTCTGTGCGCTCTCTGCAACAACGG
CAACTTCGATCAGACGTCAGCTATGCTATTCAGGGCGTACTCTAAAGCAG
CAGACGATTGCGTTATCACCCGTGATGAGGTGGCCACAGTACTGGCATAT
CACGTCGAATACGCCGACTCTGAGGTGAGATAGCCCAACGAGCTACCCGG
CAGTGGGAGAATCACTTCGGGGCCTCTTACTTCAGCGGCGCAAAGACACT
CGCGCGAGTAGCTACCAAGTATTATGTGATTTTTACTTCGCGATATATTA
GCGCCGCCACGGTGCCTGTTTCACTGCGCTACCAAATCAAATCAATCTCC
GTTTTAAGTGCGGTATAGGGCCGCTTGCGATAGCAGCCTAACCTCGGCAG
GGAAACTCGGAGTCCTCCTCTGCTGTGGCCCTGATCCTCACCACGGCTGC
TCGTTCCGAGGTACGGAGGTATGGAGAGCGTCCGTTGTAAGTTATGTTAC
GGTAAAAAATGATACGTGCTGTTTCCAATCCCGCTGGGAAACTCAACCTT
CGAAGTTGCTCTTGAAGGCGACGATGGTAAATGGTGCGCGCGGGATTCAT
CGCCGACCTTGATGTGTAAGGTTTTATGGTAACTCTTCACACGTCGGAGA
GATAGACCACGATCTACACTGTAGCTTATCTGCATCCTAAGCCTGCTGTT
GGGACATGTCTGCGCAGGGTTTGACCAACGTGTAGAACTAACTCTTTGTG
ATAGTAGAGTGCAGATATATCGTTGGTCCAAGTCGGCACTTACTTGTCGC
CAAGTAGATACGCACATCAATCATTTTTTCAGCCTCCATCATCATTCTTC
ACCATTGGGCGGTGACATGTTCTGAGTTATCTCGGTCTACCAACACGGCG
TCACATCTCATTCCTTCTCGACAGGACCCAACAATCGAACAGGAGCGCGC
TTATCGGTGGCTGAAGAGGCAGTTCATACAGCTCATAGCAACCACTAGCG
AAGCCTCGCAGACTGTAGACAACAGGGGACAGCGCGGTGCAGCAATCTCC
GTGGCCGGATCGTTCAGAGAGCCAGGCGTTGGCGGCGGCAGTGGTGGCGG
TGGCGGTGGTGCCATCAGCTGGGAGAGCGCTCGACAGCTGCTGCGACGAG
GACCGCCATGCTTGGAGAGCTCATTGGTGATAGACTTGTCTCGCCTCTCC
AAGGATTTGTGGGCTGCAGACATTGTCGATGTAGAGAGGACCAGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig1180:3321..6415+

>mRNA_M-pyrifera_M_contig1180.3737.1 ID=mRNA_M-pyrifera_M_contig1180.3737.1|Name=mRNA_M-pyrifera_M_contig1180.3737.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=2040bp|location=Sequence derived from alignment at M-pyrifera_M_contig1180:3321..6415+ (Macrocystis pyrifera P11B4 male)
CGAAGCACCTTGCTAGGGGGGGTACGACGTCGACCCACCAGTCCGTTGTC
TCCCGTCAGTCGAACGTACAACGACGTCCCCGCCAGAGAGAGTCGGGGGG
GCGAGCCATTGAGGACGGGAGAGGCAGCTGTAGCAGTGCTGGCGGATAGA
CGAAGCGGAGACGTAGCGCCAGAGGAGTGGGTGAAAGTGTCGTGGAAAAA
GGGGGAGTGCAGGGATGAGATCAAGCTGGTTGCCGAGGCTGCTGGTCTGG
GGTTCGAGGCCGCTCAAATTGTGCGAAGCACCTTGCTAGGGGGGGTACGA
CGTCGACCCACCAGTCCGTTGTCTCCCGTCAGTCGAACGTACAACGACGT
CCCCGCCAGAGAGAGTCGGGGGGGCGAGCCATTGAGGACGGGAGAGGCAG
CTGTAGCAGTGCTGGCGGATAGACGAAGCGGAGACGTAGCGCCAGAGGAG
TGGGTGAAAGTGTCGTGGAAAAAGGGGGAGTGCAGGGATGAGATCAAGCT
GGTTGCCGAGGCTGCTGGTCTGGGGTTCGAGGCCGCTCAAATTGTGGCCC
TTCGTCTATACAACCACTTCTACTGGCTGACGGAGCTACGAGAACGCTCG
GAGAAGTTGTTTGCCACGATAGCCCGGGAGAGGCGTTTCTCGCTCTCTCT
CGTTGCACATCCATCCACCATCGCCGCAGCGGAAGCTTTTCCTCACGACA
GCGCAGCTGATGACAACGACGCACATTACTCTCACCAGAGGGGGGGGGCC
CTTCGTCTATACAACCACTTCTACTGGCTGACGGAGCTACGAGAACGCTC
GGAGAAGTTGTTTGCCACGATAGCCCGGGAGAGGCGTTTCTCGCTCTCTC
TCGTTGCACATCCATCCACCATCGCCGCAGCGGAAGCTTTTCCTCACGAC
AGCGCAGCTGATGACAACGACGCACATTACTCTCACCAGAGGGGGGGGAC
AGTGAGCGCTGCACAACCGACGACGGGGGCAAGCGGCCATCGCGCAAGCA
ACGACTTCAGCCGCTACATCAAGGGTCTGTGCGCTCTCTGCAACAACGGC
AACTTCGATCAGACGTCAGCTATGCTATTCAGGGCGTACTCTAAAGCAGC
AGACGATTGCGTTATCACCCGTGATGAGGTGGCCACAGTACTGGCATATC
ACGTCGAATACGCCGACTCTGAGACAGTGAGCGCTGCACAACCGACGACG
GGGGCAAGCGGCCATCGCGCAAGCAACGACTTCAGCCGCTACATCAAGGG
TCTGTGCGCTCTCTGCAACAACGGCAACTTCGATCAGACGTCAGCTATGC
TATTCAGGGCGTACTCTAAAGCAGCAGACGATTGCGTTATCACCCGTGAT
GAGGTGGCCACAGTACTGGCATATCACGTCGAATACGCCGACTCTGAGGA
CCCAACAATCGAACAGGAGCGCGCTTATCGGTGGCTGAAGAGGCAGTTCA
TACAGCTCATAGCAACCACTAGCGAAGCCTCGCAGACTGTAGACAACAGG
GGACAGCGCGGTGCAGCAATCTCCGTGGCCGGATCGTTCAGAGAGCCAGG
CGTTGGCGGCGGCAGTGGTGGCGGTGGCGGTGGTGCCATCAGCTGGGAGA
GCGCTCGACAGCTGCTGCGACGAGGACCGCCATGCTTGGAGAGCTCATTG
GTGATAGACTTGTCTCGCCTCTCCAAGGATTTGTGGGCTGCAGACATTGT
CGATGTAGAGAGGACCAGCGACCCAACAATCGAACAGGAGCGCGCTTATC
GGTGGCTGAAGAGGCAGTTCATACAGCTCATAGCAACCACTAGCGAAGCC
TCGCAGACTGTAGACAACAGGGGACAGCGCGGTGCAGCAATCTCCGTGGC
CGGATCGTTCAGAGAGCCAGGCGTTGGCGGCGGCAGTGGTGGCGGTGGCG
GTGGTGCCATCAGCTGGGAGAGCGCTCGACAGCTGCTGCGACGAGGACCG
CCATGCTTGGAGAGCTCATTGGTGATAGACTTGTCTCGCCTCTCCAAGGA
TTTGTGGGCTGCAGACATTGTCGATGTAGAGAGGACCAGC
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