mRNA_M-pyrifera_M_contig117987.3732.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig117987.3732.1
Unique NamemRNA_M-pyrifera_M_contig117987.3732.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig117987.3732.1 vs. uniprot
Match: A0A482RPR9_9ARCH (OSTA/TMEM184 family protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RPR9_9ARCH)

HSP 1 Score: 94.0 bits (232), Expect = 9.860e-22
Identity = 43/92 (46.74%), Postives = 62/92 (67.39%), Query Frame = 1 
Query:    1 WAMYCLILFYRRLHSHFPKHSKPVQKLALVKAVVFVSWWQGIVVAGLSYWGFVRRSVDYSKEEVVRGIQDSLICAEMLLAAIAHHYTFSYHD 276
            WAMYCL++FYR L        +P  K   VKAVVF S+WQ ++++GL +   ++ ++ Y+K++V +G+QD +IC EM LAAI H Y FSY D
Sbjct:   46 WAMYCLVMFYRELKDQLAP-LRPFGKFLCVKAVVFFSFWQQMLISGLVFVNVIKPTLTYTKDDVSKGLQDFVICIEMALAAIVHRYYFSYQD 136
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BLAST of mRNA_M-pyrifera_M_contig117987.3732.1 vs. uniprot
Match: A0A7S4E1A8_9EUKA (Hypothetical protein n=2 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S4E1A8_9EUKA)

HSP 1 Score: 95.9 bits (237), Expect = 4.130e-21
Identity = 47/99 (47.47%), Postives = 65/99 (65.66%), Query Frame = 1 
Query:    1 WAMYCLILFYRRLHSHFPKHSKPVQKLALVKAVVFVSWWQGIVVAGLSYWGFVRRSVDYSKEEVVRGIQDSLICAEMLLAAIAHHYTFSYHDVVLDVVE 297
            WAMYCL+LFY   H    +   P+ KL  VKAVVF S+WQG+V+A L   G +  +  ++ EE+ RG QD LIC EM+ AAIAH ++FSY D  + +++
Sbjct:  233 WAMYCLMLFYYSYHDEL-EGFHPLSKLVCVKAVVFFSFWQGVVIAILVKQGMITSTYHWTTEEIARGTQDYLICIEMVFAAIAHLFSFSYKDFEVQIIK 330
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BLAST of mRNA_M-pyrifera_M_contig117987.3732.1 vs. uniprot
Match: A0A5A8C1E9_CAFRO (Uncharacterized protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8C1E9_CAFRO)

HSP 1 Score: 94.4 bits (233), Expect = 1.820e-20
Identity = 42/94 (44.68%), Postives = 60/94 (63.83%), Query Frame = 1 
Query:    1 WAMYCLILFYRRLHSHFPKHSKPVQKLALVKAVVFVSWWQGIVVAGLSYWGFVRRSVDYSKEEVVRGIQDSLICAEMLLAAIAHHYTFSYHDVV 282
            WA+YCL+L Y   H    +  +P +K  ++KAVVF+ WWQ +VVAG+   G++  +  +S E++ RG+QD LIC EM L A  HH  +SY D V
Sbjct:  346 WALYCLLLVYLNFHEAL-RDLQPTKKFLVIKAVVFLCWWQSLVVAGMGQAGWLEGTATWSSEQIERGLQDFLICVEMALIAAVHHSVYSYRDFV 438
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BLAST of mRNA_M-pyrifera_M_contig117987.3732.1 vs. uniprot
Match: A0A7S3Z2W0_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3Z2W0_9EUKA)

HSP 1 Score: 89.0 bits (219), Expect = 4.450e-20
Identity = 45/92 (48.91%), Postives = 59/92 (64.13%), Query Frame = 1 
Query:    1 WAMYCLILFYRRLHSHFPKHSKPVQKLALVKAVVFVSWWQGIVVAGLSYWGFVRRSVDYSKEEVVRGIQDSLICAEMLLAAIAHHYTFSYHD 276
            WAMYCL LFY           +PV K  +VKAVVF +WWQ +++A L    ++ R+ ++S E+VV G Q+ LIC EMLLAA+AH YTF   D
Sbjct:   17 WAMYCLALFYVACKVELGP-IRPVGKFMVVKAVVFFTWWQSVMLALLVKMDWIHRNGEFSTEDVVNGTQNLLICLEMLLAAMAHRYTFPVRD 107
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BLAST of mRNA_M-pyrifera_M_contig117987.3732.1 vs. uniprot
Match: W7U6C0_9STRA (Transmembrane protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U6C0_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 1.020e-19
Identity = 41/92 (44.57%), Postives = 60/92 (65.22%), Query Frame = 1 
Query:    1 WAMYCLILFYRRLHSHFPKHSKPVQKLALVKAVVFVSWWQGIVVAGLSYWGFVRRSVDYSKEEVVRGIQDSLICAEMLLAAIAHHYTFSYHD 276
            WA+YCL+ FY   H    +   P  K  +VK VVF+S+WQG++ +G++  G +R  +DYSK+++  GIQ+ LIC EM   ++AH Y FSY D
Sbjct:  296 WAVYCLVAFYHEFHYEL-RAINPFWKFVVVKMVVFLSFWQGLLFSGMAREGMLRPYMDYSKQDIASGIQNLLICIEMAAISVAHKYVFSYKD 386
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BLAST of mRNA_M-pyrifera_M_contig117987.3732.1 vs. uniprot
Match: A0A7S0MZZ2_9CRYP (Hypothetical protein n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MZZ2_9CRYP)

HSP 1 Score: 91.7 bits (226), Expect = 1.370e-19
Identity = 43/92 (46.74%), Postives = 60/92 (65.22%), Query Frame = 1 
Query:    1 WAMYCLILFYRRLHSHFPKHSKPVQKLALVKAVVFVSWWQGIVVAGLSYWGFVRRSVDYSKEEVVRGIQDSLICAEMLLAAIAHHYTFSYHD 276
            WA+YCL+LFY  L       + P+ K  +VKAVVF SWWQ I++AG++    V   +DYS E+V +G+Q+ LI  EML+ A+ H + FSY D
Sbjct:  313 WALYCLVLFYHELKDELAPIN-PLGKFLVVKAVVFFSWWQQIIIAGMASMEMVHPMLDYSAEDVAKGMQNLLIVVEMLVYAVCHKFIFSYTD 403
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BLAST of mRNA_M-pyrifera_M_contig117987.3732.1 vs. uniprot
Match: A0A7S3Z2L5_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3Z2L5_9EUKA)

HSP 1 Score: 89.0 bits (219), Expect = 2.320e-19
Identity = 45/92 (48.91%), Postives = 59/92 (64.13%), Query Frame = 1 
Query:    1 WAMYCLILFYRRLHSHFPKHSKPVQKLALVKAVVFVSWWQGIVVAGLSYWGFVRRSVDYSKEEVVRGIQDSLICAEMLLAAIAHHYTFSYHD 276
            WAMYCL LFY           +PV K  +VKAVVF +WWQ +++A L    ++ R+ ++S E+VV G Q+ LIC EMLLAA+AH YTF   D
Sbjct:  102 WAMYCLALFYVACKVELGP-IRPVGKFMVVKAVVFFTWWQSVMLALLVKMDWIHRNGEFSTEDVVNGTQNLLICLEMLLAAMAHRYTFPVRD 192
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BLAST of mRNA_M-pyrifera_M_contig117987.3732.1 vs. uniprot
Match: A0A7S4DTK1_9EUKA (Hypothetical protein n=3 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S4DTK1_9EUKA)

HSP 1 Score: 89.0 bits (219), Expect = 7.110e-19
Identity = 45/92 (48.91%), Postives = 59/92 (64.13%), Query Frame = 1 
Query:    1 WAMYCLILFYRRLHSHFPKHSKPVQKLALVKAVVFVSWWQGIVVAGLSYWGFVRRSVDYSKEEVVRGIQDSLICAEMLLAAIAHHYTFSYHD 276
            WAMYCL LFY           +PV K  +VKAVVF +WWQ +++A L    ++ R+ ++S E+VV G Q+ LIC EMLLAA+AH YTF   D
Sbjct:  191 WAMYCLALFYVACKVELGP-IRPVGKFMVVKAVVFFTWWQSVMLALLVKMDWIHRNGEFSTEDVVNGTQNLLICLEMLLAAMAHRYTFPVRD 281
[Close]
BLAST of mRNA_M-pyrifera_M_contig117987.3732.1 vs. uniprot
Match: A0A150G5F7_GONPE (Uncharacterized protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150G5F7_GONPE)

HSP 1 Score: 89.7 bits (221), Expect = 7.860e-19
Identity = 45/94 (47.87%), Postives = 59/94 (62.77%), Query Frame = 1 
Query:    1 WAMYCLILFYRRLHSHFPKHSKPVQKLALVKAVVFVSWWQGIVVAGLSYWGFVRRS--VDYSKEEVVRGIQDSLICAEMLLAAIAHHYTFSYHD 276
            WA+YCL+  Y  +H+      +P+ K   +KAVVFV++WQGI +A L Y+G +RR     Y K +V  GIQD LIC EM LAA+AH Y F   D
Sbjct:   94 WALYCLVQLYSAMHAELAP-IRPLSKFLCIKAVVFVTFWQGIGIALLVYFGVIRRESWTTYDKMDVASGIQDFLICIEMFLAALAHAYAFPPRD 186
[Close]
BLAST of mRNA_M-pyrifera_M_contig117987.3732.1 vs. uniprot
Match: A0A7S0EV46_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0EV46_9CRYP)

HSP 1 Score: 89.4 bits (220), Expect = 1.070e-18
Identity = 43/92 (46.74%), Postives = 58/92 (63.04%), Query Frame = 1 
Query:    1 WAMYCLILFYRRLHSHFPKHSKPVQKLALVKAVVFVSWWQGIVVAGLSYWGFVRRSVDYSKEEVVRGIQDSLICAEMLLAAIAHHYTFSYHD 276
            WA+YCLILFY+ L         P+ K  +VKAVVFVSWWQGI++   +    +   +DYS E+V +G+Q+ LICAEM +  +  H  FSY D
Sbjct:  312 WALYCLILFYKELSGELAAIG-PLPKFLVVKAVVFVSWWQGILIMFAASNHMLNPVLDYSAEDVAKGLQNLLICAEMFIYGLLFHVIFSYRD 402
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig117987.3732.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A482RPR9_9ARCH9.860e-2246.74OSTA/TMEM184 family protein n=1 Tax=archaeon TaxID... [more]
A0A7S4E1A8_9EUKA4.130e-2147.47Hypothetical protein n=2 Tax=Lotharella globosa Ta... [more]
A0A5A8C1E9_CAFRO1.820e-2044.68Uncharacterized protein n=2 Tax=Cafeteria roenberg... [more]
A0A7S3Z2W0_9EUKA4.450e-2048.91Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
W7U6C0_9STRA1.020e-1944.57Transmembrane protein n=1 Tax=Nannochloropsis gadi... [more]
A0A7S0MZZ2_9CRYP1.370e-1946.74Hypothetical protein n=1 Tax=Cryptomonas curvata T... [more]
A0A7S3Z2L5_9EUKA2.320e-1948.91Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
A0A7S4DTK1_9EUKA7.110e-1948.91Hypothetical protein n=3 Tax=Lotharella globosa Ta... [more]
A0A150G5F7_GONPE7.860e-1947.87Uncharacterized protein n=1 Tax=Gonium pectorale T... [more]
A0A7S0EV46_9CRYP1.070e-1846.74Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig117987contigM-pyrifera_M_contig117987:238..534 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.9
Seed ortholog evalue1.1e-14
Seed eggNOG ortholog227086.JGI_V11_66882
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.negative regulation of brassinosteroid mediated signaling pathway
EggNOG OGsKOG2641@1,KOG2641@2759
Ec32 ortholog descriptionOrganic solute transporter subunit alpha/Transmembrane protein 184
Ec32 orthologEc-21_004950.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size297
Cds size291
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815699.0261374-UTR-M-pyrifera_M_contig117987:237..2431622815699.0261374-UTR-M-pyrifera_M_contig117987:237..243Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig117987 238..243 +
1692277527.623889-UTR-M-pyrifera_M_contig117987:237..2431692277527.623889-UTR-M-pyrifera_M_contig117987:237..243Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig117987 238..243 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815699.0365868-CDS-M-pyrifera_M_contig117987:243..5341622815699.0365868-CDS-M-pyrifera_M_contig117987:243..534Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117987 244..534 +
1692277527.6364245-CDS-M-pyrifera_M_contig117987:243..5341692277527.6364245-CDS-M-pyrifera_M_contig117987:243..534Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117987 244..534 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig117987.3732.1prot_M-pyrifera_M_contig117987.3732.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig117987 244..534 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig117987.3732.1

>prot_M-pyrifera_M_contig117987.3732.1 ID=prot_M-pyrifera_M_contig117987.3732.1|Name=mRNA_M-pyrifera_M_contig117987.3732.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=97bp
MYCLILFYRRLHSHFPKHSKPVQKLALVKAVVFVSWWQGIVVAGLSYWGF
VRRSVDYSKEEVVRGIQDSLICAEMLLAAIAHHYTFSYHDVVLDVVE
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mRNA from alignment at M-pyrifera_M_contig117987:238..534+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig117987.3732.1 ID=mRNA_M-pyrifera_M_contig117987.3732.1|Name=mRNA_M-pyrifera_M_contig117987.3732.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=297bp|location=Sequence derived from alignment at M-pyrifera_M_contig117987:238..534+ (Macrocystis pyrifera P11B4 male)
TGGGCCATGTACTGCCTCATCCTCTTCTACCGCAGGCTGCACTCCCACTT
CCCAAAACACTCCAAGCCAGTGCAGAAACTGGCGCTGGTCAAGGCGGTCG
TCTTCGTCTCCTGGTGGCAGGGGATTGTCGTCGCTGGCCTGTCCTACTGG
GGATTCGTGCGACGCAGTGTAGACTACTCCAAGGAAGAAGTCGTCAGAGG
TATCCAAGACTCGCTCATCTGCGCAGAAATGCTCCTCGCAGCTATCGCAC
ACCACTACACCTTCTCCTACCACGATGTTGTCCTTGACGTAGTTGAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig117987:238..534+

>mRNA_M-pyrifera_M_contig117987.3732.1 ID=mRNA_M-pyrifera_M_contig117987.3732.1|Name=mRNA_M-pyrifera_M_contig117987.3732.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=582bp|location=Sequence derived from alignment at M-pyrifera_M_contig117987:238..534+ (Macrocystis pyrifera P11B4 male)
ATGTACTGCCTCATCCTCTTCTACCGCAGGCTGCACTCCCACTTCCCAAA
ACACTCCAAGCCAGTGCAGAAACTGGCGCTGGTCAAGGCGGTCGTCTTCG
TCTCCTGGTGGCAGGGGATTGTCGTCGCTGGCCTGTCCTACTGGGGATTC
GTGCGACGCAGTGTAGACTACTCCAAGGAAGAAGTCGTCAGAGGTATCCA
AGACTCGCTCATCTGCGCAGAAATGCTCCTCGCAGCTATCGCACACCACT
ACACCTTCTCCTACCACGATGTTGTCCTTGACGTAGTTGAAATGTACTGC
CTCATCCTCTTCTACCGCAGGCTGCACTCCCACTTCCCAAAACACTCCAA
GCCAGTGCAGAAACTGGCGCTGGTCAAGGCGGTCGTCTTCGTCTCCTGGT
GGCAGGGGATTGTCGTCGCTGGCCTGTCCTACTGGGGATTCGTGCGACGC
AGTGTAGACTACTCCAAGGAAGAAGTCGTCAGAGGTATCCAAGACTCGCT
CATCTGCGCAGAAATGCTCCTCGCAGCTATCGCACACCACTACACCTTCT
CCTACCACGATGTTGTCCTTGACGTAGTTGAA
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