mRNA_M-pyrifera_M_contig117974.3728.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig117974.3728.1
Unique NamemRNA_M-pyrifera_M_contig117974.3728.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig117974.3728.1 vs. uniprot
Match: A0A7S4I377_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4I377_9EUKA)

HSP 1 Score: 207 bits (527), Expect = 2.240e-63
Identity = 95/145 (65.52%), Postives = 119/145 (82.07%), Query Frame = 1
Query:    1 DGFNMPVSDCSGNKKSLFVGINYTGMNGELRGCLNDVVNMKNFVTSNYGFSEDSEHMLVLTDDQSGKFSPTRENIVAAMRWLVEGAQPGDSLFFHYSGHGGTQKDESPESDELDGQDETLVPLDYQTNGMIVDDEIHAILVAPLP 435
            DG+ MP S C+GNKK+L VGINY G   ELRGC+NDV N+K+ +T  +GF ED+ HMLVLTDDQ G+ SPTRENI+  M+WL+EGA+ GDSLFFH+SGHGGTQ D+  + DE DG+DET++P+DY T GMIVDD+IH++LVAPLP
Sbjct:   70 DGYAMPTSSCTGNKKALLVGINYFGSKSELRGCINDVQNVKSMITQKFGFEEDAAHMLVLTDDQQGRKSPTRENIIHGMKWLIEGAKDGDSLFFHFSGHGGTQTDK--DGDEADGKDETIIPVDYLTKGMIVDDDIHSMLVAPLP 212          
BLAST of mRNA_M-pyrifera_M_contig117974.3728.1 vs. uniprot
Match: A0A7S0D6B9_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0D6B9_9EUKA)

HSP 1 Score: 180 bits (457), Expect = 1.970e-52
Identity = 89/149 (59.73%), Postives = 113/149 (75.84%), Query Frame = 1
Query:    1 DGFNMPVSDCSGNKKSLFVGINYTGMNGELRGCLNDVVNMKNFVTSNYGFSEDSEHM-LVLTDDQSGKFS---PTRENIVAAMRWLVEGAQPGDSLFFHYSGHGGTQKDESPESDELDGQDETLVPLDYQTNGMIVDDEIHAILVAPLP 435
            DG ++P S C G +K LF+GINY G   ELRGCLNDV N+K F+   + F  D  ++ + LTDD   K +   PT+ENI+ AM+WLV+ AQ GDSLFFHYSGHGGTQ+D +P++DE+DGQDETLVP+DY++ G IVDD+IHAILVA LP
Sbjct:  107 DGASIPRSKCDGTRKCLFIGINYYGSRAELRGCLNDVKNIKKFLKDTFKFPVDVRNLSMTLTDDSQNKGTKLYPTKENIMNAMKWLVKDAQEGDSLFFHYSGHGGTQQDIAPDTDEIDGQDETLVPVDYESTGQIVDDDIHAILVAGLP 255          
BLAST of mRNA_M-pyrifera_M_contig117974.3728.1 vs. uniprot
Match: A0A1Y1Z4P9_9FUNG (Metacaspase n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1Z4P9_9FUNG)

HSP 1 Score: 176 bits (447), Expect = 1.760e-51
Identity = 88/147 (59.86%), Postives = 112/147 (76.19%), Query Frame = 1
Query:    1 DGFNMPVSDCSGNKKSLFVGINYTGMNGELRGCLNDVVNMKNFVTSNYGFSEDSEHMLVLTDDQSGKFS-PTRENIVAAMRWLVEGAQPGDSLFFHYSGHGGTQKDESPESDELDGQDETLVPLDYQTNGMIVDDEIHAILVAPLPA 438
            +G    +SDC GNKK+LFVGINY   + ELRGC+NDV N+ NFVT+N+GF+   ++ LVLTDDQ      PTR NI+  M+WLVEGAQPGDSLFFHYSGHGG+ +D   + DE+DG+DET+ PLD++  GMI DDE+HA++V  LPA
Sbjct:   63 NGEEFSISDCRGNKKALFVGINYFNTSAELRGCINDVKNIMNFVTNNFGFNP--QNCLVLTDDQQDPSKIPTRNNILLGMKWLVEGAQPGDSLFFHYSGHGGSTQD--TDGDEVDGKDETIYPLDHEQAGMIHDDEMHALMVRDLPA 205          
BLAST of mRNA_M-pyrifera_M_contig117974.3728.1 vs. uniprot
Match: A0A4P9XXC3_9FUNG (Peptidase C14, caspase domain-containing protein n=1 Tax=Thamnocephalis sphaerospora TaxID=78915 RepID=A0A4P9XXC3_9FUNG)

HSP 1 Score: 174 bits (440), Expect = 4.320e-51
Identity = 89/140 (63.57%), Postives = 107/140 (76.43%), Query Frame = 1
Query:   16 PVSDCSGNKKSLFVGINYTGMNGELRGCLNDVVNMKNFVTSNYGFSEDSEHMLVLTDDQS-GKFSPTRENIVAAMRWLVEGAQPGDSLFFHYSGHGGTQKDESPESDELDGQDETLVPLDYQTNGMIVDDEIHAILVAPL 432
            P+   SGNKK++F+GINYTGM   L GC+NDV N++NF+   YGF  +  H + LTDDQ   KF PTR NI+AAM+WLV+ AQPGDSLF HYSGHG T +D   + DE DGQDET+VPLDYQT GMIVDD++HAILV PL
Sbjct:    7 PIILVSGNKKAVFIGINYTGMPVALNGCINDVHNIRNFLQQRYGFLPN--HCVQLTDDQEEAKFLPTRANIIAAMKWLVQDAQPGDSLFLHYSGHGATAED--MDGDEKDGQDETIVPLDYQTAGMIVDDDLHAILVKPL 142          
BLAST of mRNA_M-pyrifera_M_contig117974.3728.1 vs. uniprot
Match: A0A1Y1Y4H2_9FUNG (Metacaspase n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1Y4H2_9FUNG)

HSP 1 Score: 174 bits (441), Expect = 4.770e-51
Identity = 88/147 (59.86%), Postives = 111/147 (75.51%), Query Frame = 1
Query:    1 DGFNMPVSDCSGNKKSLFVGINYTGMNGELRGCLNDVVNMKNFVTSNYGFSEDSEHMLVLTDDQSGKFS-PTRENIVAAMRWLVEGAQPGDSLFFHYSGHGGTQKDESPESDELDGQDETLVPLDYQTNGMIVDDEIHAILVAPLPA 438
            +G N+ VSDC G KK+LF+GINY G   ELRGC+NDV N+KNFV S YGFSE  ++ ++LTDDQ      PTR+NI+  +RWLVEGA  GDSLF H+SGHGG+ KDE  + DE+DG DET+ P+D++  G+IVDDEIHAI V  LP+
Sbjct:   20 NGENVSVSDCRGRKKALFIGINYFGSGSELRGCINDVHNVKNFVFSRYGFSE--QNSVILTDDQQDPSKIPTRDNIIRGLRWLVEGASMGDSLFLHFSGHGGSIKDE--DGDEVDGHDETIYPVDHERAGVIVDDEIHAICVKNLPS 162          
BLAST of mRNA_M-pyrifera_M_contig117974.3728.1 vs. uniprot
Match: A0A4Y7SIS1_9AGAR (Peptidase C14 n=1 Tax=Coprinellus micaceus TaxID=71717 RepID=A0A4Y7SIS1_9AGAR)

HSP 1 Score: 171 bits (432), Expect = 1.680e-49
Identity = 82/138 (59.42%), Postives = 103/138 (74.64%), Query Frame = 1
Query:   22 SDCSGNKKSLFVGINYTGMNGELRGCLNDVVNMKNFVTSNYGFSEDSEHMLVLTDDQSGKFSPTRENIVAAMRWLVEGAQPGDSLFFHYSGHGGTQKDESPESDELDGQDETLVPLDYQTNGMIVDDEIHAILVAPLP 435
            S C GNKK++F+GINYTG +  L GC NDV N+  F+T+NYG+ E +E  + L DD+  +  PTRENI+AA+ WLVEGA   D+LF HYSGHGGTQ D   + DE DG DET+ P+DY+TNG IVDDE+H+ILV PLP
Sbjct:   48 STCQGNKKAVFIGINYTGGSAPLSGCHNDVSNLHEFITTNYGYDE-AEVKIFLDDDEDPETQPTRENIIAALHWLVEGASQDDALFLHYSGHGGTQAD--ADGDEADGTDETICPIDYETNGQIVDDELHSILVKPLP 182          
BLAST of mRNA_M-pyrifera_M_contig117974.3728.1 vs. uniprot
Match: A0A1Y2EQH8_9FUNG (Uncharacterized protein n=1 Tax=Neocallimastix californiae TaxID=1754190 RepID=A0A1Y2EQH8_9FUNG)

HSP 1 Score: 171 bits (434), Expect = 2.790e-49
Identity = 86/146 (58.90%), Postives = 107/146 (73.29%), Query Frame = 1
Query:    1 DGFNMPVSDCSGNKKSLFVGINYTGMNGELRGCLNDVVNMKNFVTSNYGFSEDSEHMLVLTDDQS-GKFSPTRENIVAAMRWLVEGAQPGDSLFFHYSGHGGTQKDESPESDELDGQDETLVPLDYQTNGMIVDDEIHAILVAPLP 435
            DG    +S+C+GN+K+LF+GINY G N EL+GC+NDV N+  FV   +GF    ++ L LTDDQ      PT +NI+  M+WLVEGA+PGDSLFFHYSGHGGT KD   E+DE+DG DET++PLDY  NG IVDD I+A LV PLP
Sbjct:   90 DGNGFTLSECNGNRKALFIGINYFGTNAELKGCINDVKNISQFVCQKFGF----QNCLYLTDDQQDASKKPTYDNIINGMKWLVEGAKPGDSLFFHYSGHGGTAKDS--ETDEIDGFDETILPLDYTQNGQIVDDVIYANLVKPLP 229          
BLAST of mRNA_M-pyrifera_M_contig117974.3728.1 vs. uniprot
Match: A0A1Y1W1D7_9FUNG (Uncharacterized protein n=1 Tax=Anaeromyces robustus TaxID=1754192 RepID=A0A1Y1W1D7_9FUNG)

HSP 1 Score: 169 bits (429), Expect = 1.390e-48
Identity = 87/146 (59.59%), Postives = 106/146 (72.60%), Query Frame = 1
Query:    1 DGFNMPVSDCSGNKKSLFVGINYTGMNGELRGCLNDVVNMKNFVTSNYGFSEDSEHMLVLTDDQSGKFS-PTRENIVAAMRWLVEGAQPGDSLFFHYSGHGGTQKDESPESDELDGQDETLVPLDYQTNGMIVDDEIHAILVAPLP 435
            DG N  +SDCSGNKK+LF+GINY G   EL+GC+NDV N+   V   +GF+    + L LTDDQ  +   PT +NI+ AMRWLV+ A+PGDSLFFHYSGHGGT KD   E+DE+DG DET++PLDY   G IVDD I+A LV PLP
Sbjct:   85 DGDNFTLSDCSGNKKALFIGINYFGTQAELKGCINDVQNVSTLVCKRFGFN----NCLYLTDDQQDQNKKPTYDNIINAMRWLVQDAKPGDSLFFHYSGHGGTAKD--AETDEIDGFDETILPLDYNQKGQIVDDVIYANLVQPLP 224          
BLAST of mRNA_M-pyrifera_M_contig117974.3728.1 vs. uniprot
Match: A0A485L0A8_9STRA (Aste57867_14306 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L0A8_9STRA)

HSP 1 Score: 169 bits (427), Expect = 1.480e-48
Identity = 85/139 (61.15%), Postives = 101/139 (72.66%), Query Frame = 1
Query:   22 SDCSGNKKSLFVGINYTGMNGELRGCLNDVVNMKNFVTSNYGFSEDSEHMLVLTDDQSGKFSPTRENIVAAMRWLVEGAQPGDSLFFHYSGHGGTQKDESPESDELDGQDETLVPLDYQTNGMIVDDEIHAILVAPLPA 438
            ++   +KK+LF+GINY G N ELRGC+ DV N+  FVT   GF E   ++  LTDD+ GK  PTR NI+A MRWLVE A+PGDSLF HYSGHG  QKDE  + DE DG DET+ P+DY T GMI DDE+HAIL APLPA
Sbjct:   62 NNAQSSKKALFIGINYFGTNAELRGCIKDVENLSRFVTERCGFPE--ANLRRLTDDRQGKDKPTRANILAGMRWLVENARPGDSLFLHYSGHGSQQKDE--DGDEADGMDETICPVDYDTAGMITDDEMHAILCAPLPA 196          
BLAST of mRNA_M-pyrifera_M_contig117974.3728.1 vs. uniprot
Match: A0A1Y3NAP7_PIRSE (Uncharacterized protein n=1 Tax=Piromyces sp. (strain E2) TaxID=73868 RepID=A0A1Y3NAP7_PIRSE)

HSP 1 Score: 172 bits (435), Expect = 1.560e-48
Identity = 79/140 (56.43%), Postives = 108/140 (77.14%), Query Frame = 1
Query:   19 VSDCSGNKKSLFVGINYTGMNGELRGCLNDVVNMKNFVTSNYGFSEDSEHMLVLTDDQSGKFS-PTRENIVAAMRWLVEGAQPGDSLFFHYSGHGGTQKDESPESDELDGQDETLVPLDYQTNGMIVDDEIHAILVAPLP 435
            +S C GNKK+L +GINY G   +L+GC+NDV N+K  +T+ YGFS+  + M++LTDD S     PTR+NI+ AM+WLV+G +PGDSLFFH+SGHG   KD   + DE+DG DET++P+D++ NGMIVDDE++AI+V PLP
Sbjct:  205 ISSCQGNKKALLIGINYIGQQAQLKGCINDVQNVKELITTRYGFSDRPDKMVILTDDSSNPLKIPTRKNIINAMKWLVQGCKPGDSLFFHFSGHGSQVKD--LDGDEVDGYDETILPVDFKKNGMIVDDEMNAIMVRPLP 342          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig117974.3728.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4I377_9EUKA2.240e-6365.52Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A7S0D6B9_9EUKA1.970e-5259.73Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
A0A1Y1Z4P9_9FUNG1.760e-5159.86Metacaspase n=1 Tax=Basidiobolus meristosporus CBS... [more]
A0A4P9XXC3_9FUNG4.320e-5163.57Peptidase C14, caspase domain-containing protein n... [more]
A0A1Y1Y4H2_9FUNG4.770e-5159.86Metacaspase n=1 Tax=Basidiobolus meristosporus CBS... [more]
A0A4Y7SIS1_9AGAR1.680e-4959.42Peptidase C14 n=1 Tax=Coprinellus micaceus TaxID=7... [more]
A0A1Y2EQH8_9FUNG2.790e-4958.90Uncharacterized protein n=1 Tax=Neocallimastix cal... [more]
A0A1Y1W1D7_9FUNG1.390e-4859.59Uncharacterized protein n=1 Tax=Anaeromyces robust... [more]
A0A485L0A8_9STRA1.480e-4861.15Aste57867_14306 protein n=1 Tax=Aphanomyces stella... [more]
A0A1Y3NAP7_PIRSE1.560e-4856.43Uncharacterized protein n=1 Tax=Piromyces sp. (str... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig117974contigM-pyrifera_M_contig117974:4..441 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score169.5
Seed ortholog evalue1.1e-39
Seed eggNOG ortholog72019.SARC_01763T0
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Metacaspase
EggNOG OGs38EI0@33154,KOG1546@1,KOG1546@2759
COG Functional cat.DO
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
Exons1
Model size438
Cds size426
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815698.829304-CDS-M-pyrifera_M_contig117974:3..4291622815698.829304-CDS-M-pyrifera_M_contig117974:3..429Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117974 4..429 -
1692277527.5422268-CDS-M-pyrifera_M_contig117974:3..4291692277527.5422268-CDS-M-pyrifera_M_contig117974:3..429Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117974 4..429 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815698.8453195-UTR-M-pyrifera_M_contig117974:429..4411622815698.8453195-UTR-M-pyrifera_M_contig117974:429..441Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig117974 430..441 -
1692277527.5515335-UTR-M-pyrifera_M_contig117974:429..4411692277527.5515335-UTR-M-pyrifera_M_contig117974:429..441Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig117974 430..441 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig117974.3728.1prot_M-pyrifera_M_contig117974.3728.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig117974 4..429 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig117974.3728.1

>prot_M-pyrifera_M_contig117974.3728.1 ID=prot_M-pyrifera_M_contig117974.3728.1|Name=mRNA_M-pyrifera_M_contig117974.3728.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=142bp
MPVSDCSGNKKSLFVGINYTGMNGELRGCLNDVVNMKNFVTSNYGFSEDS
EHMLVLTDDQSGKFSPTRENIVAAMRWLVEGAQPGDSLFFHYSGHGGTQK
DESPESDELDGQDETLVPLDYQTNGMIVDDEIHAILVAPLPA
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mRNA from alignment at M-pyrifera_M_contig117974:4..441-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig117974.3728.1 ID=mRNA_M-pyrifera_M_contig117974.3728.1|Name=mRNA_M-pyrifera_M_contig117974.3728.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=438bp|location=Sequence derived from alignment at M-pyrifera_M_contig117974:4..441- (Macrocystis pyrifera P11B4 male)
GACGGATTCAACATGCCCGTCTCCGACTGCTCCGGCAACAAGAAGTCGCT CTTCGTCGGCATCAACTACACGGGCATGAACGGCGAGCTCCGCGGCTGCC TGAACGACGTCGTGAACATGAAGAACTTCGTGACCTCCAACTACGGCTTC AGCGAGGACTCTGAGCACATGCTGGTGCTCACCGACGACCAGTCTGGCAA GTTCTCGCCCACGCGCGAGAACATCGTCGCCGCCATGCGCTGGCTCGTCG AGGGCGCCCAGCCCGGCGACTCTCTCTTCTTCCACTACTCGGGCCACGGA GGCACCCAGAAGGACGAGTCTCCCGAGTCTGACGAGCTCGACGGCCAGGA CGAGACCCTGGTGCCGCTCGACTACCAGACCAACGGCATGATTGTCGACG ACGAGATCCACGCCATCCTCGTCGCCCCGCTCCCCGCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig117974:4..441-

>mRNA_M-pyrifera_M_contig117974.3728.1 ID=mRNA_M-pyrifera_M_contig117974.3728.1|Name=mRNA_M-pyrifera_M_contig117974.3728.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=852bp|location=Sequence derived from alignment at M-pyrifera_M_contig117974:4..441- (Macrocystis pyrifera P11B4 male)
ATGCCCGTCTCCGACTGCTCCGGCAACAAGAAGTCGCTCTTCGTCGGCAT
CAACTACACGGGCATGAACGGCGAGCTCCGCGGCTGCCTGAACGACGTCG
TGAACATGAAGAACTTCGTGACCTCCAACTACGGCTTCAGCGAGGACTCT
GAGCACATGCTGGTGCTCACCGACGACCAGTCTGGCAAGTTCTCGCCCAC
GCGCGAGAACATCGTCGCCGCCATGCGCTGGCTCGTCGAGGGCGCCCAGC
CCGGCGACTCTCTCTTCTTCCACTACTCGGGCCACGGAGGCACCCAGAAG
GACGAGTCTCCCGAGTCTGACGAGCTCGACGGCCAGGACGAGACCCTGGT
GCCGCTCGACTACCAGACCAACGGCATGATTGTCGACGACGAGATCCACG
CCATCCTCGTCGCCCCGCTCCCCGCGATGCCCGTCTCCGACTGCTCCGGC
AACAAGAAGTCGCTCTTCGTCGGCATCAACTACACGGGCATGAACGGCGA
GCTCCGCGGCTGCCTGAACGACGTCGTGAACATGAAGAACTTCGTGACCT
CCAACTACGGCTTCAGCGAGGACTCTGAGCACATGCTGGTGCTCACCGAC
GACCAGTCTGGCAAGTTCTCGCCCACGCGCGAGAACATCGTCGCCGCCAT
GCGCTGGCTCGTCGAGGGCGCCCAGCCCGGCGACTCTCTCTTCTTCCACT
ACTCGGGCCACGGAGGCACCCAGAAGGACGAGTCTCCCGAGTCTGACGAG
CTCGACGGCCAGGACGAGACCCTGGTGCCGCTCGACTACCAGACCAACGG
CATGATTGTCGACGACGAGATCCACGCCATCCTCGTCGCCCCGCTCCCCG
CG
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