mRNA_M-pyrifera_M_contig117956.3718.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig117956.3718.1
Unique NamemRNA_M-pyrifera_M_contig117956.3718.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig117956.3718.1 vs. uniprot
Match: A0A3D5DCY2_9GAMM (Histidine kinase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3D5DCY2_9GAMM)

HSP 1 Score: 252 bits (643), Expect = 7.330e-81
Identity = 119/153 (77.78%), Postives = 137/153 (89.54%), Query Frame = 1
Query:    1 LDVLREDVGEVIARDLQRMAGYIFAALPITGSDTGDYLVRNIVGVDEEQKLVGIGELLDEGAPFMFCRRDGASAIQDLERMLDDVARRVRGKARGALYYSCVARGRHQFGEDSEELRMVQAALGDIPLVGFFANGEIFHNRLYAYTGVLSVFC 459
            LDVLREDVGE+IARDLQRMAGYIFAALPI GSDT DYLVRNIVG+DE +K+ GI +LL E +  MFCRRDGA+A QD+ERML D++RR+ G ARGALYYSC+ARGRHQFGE+SEEL+M++  LGD+PLVGFFANGE+FHNR YAYTGVLSVFC
Sbjct:  220 LDVLREDVGEMIARDLQRMAGYIFAALPIRGSDTADYLVRNIVGIDEGRKVFGIADLLLEDSKLMFCRRDGAAARQDMERMLQDISRRIDGDARGALYYSCLARGRHQFGENSEELKMIKDVLGDVPLVGFFANGEVFHNRFYAYTGVLSVFC 372          
BLAST of mRNA_M-pyrifera_M_contig117956.3718.1 vs. uniprot
Match: A0A6L8EKF3_9GAMM (Histidine kinase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A6L8EKF3_9GAMM)

HSP 1 Score: 226 bits (576), Expect = 9.570e-71
Identity = 104/153 (67.97%), Postives = 125/153 (81.70%), Query Frame = 1
Query:    1 LDVLREDVGEVIARDLQRMAGYIFAALPITGSDTGDYLVRNIVGVDEEQKLVGIGELLDEGAPFMFCRRDGASAIQDLERMLDDVARRVRGKARGALYYSCVARGRHQFGEDSEELRMVQAALGDIPLVGFFANGEIFHNRLYAYTGVLSVFC 459
            LDV  EDVGEVIARDLQR+AGYIFA  PI GSDT DY+VRN+VG+DE  +L+ +G +L EG+  MFCRRDG +A QD++RML D+  R+  + RGA+YYSC  RGR+QFG DSEEL M++  LGD+PLVGFFANGEIFHNRLY YTGVL+VFC
Sbjct:  220 LDVFMEDVGEVIARDLQRVAGYIFAGFPIPGSDTSDYMVRNLVGIDEGNRLIAVGHMLTEGSEIMFCRRDGNTARQDMQRMLADIKGRMPAQPRGAVYYSCTGRGRYQFGPDSEELNMIRDELGDLPLVGFFANGEIFHNRLYGYTGVLTVFC 372          
BLAST of mRNA_M-pyrifera_M_contig117956.3718.1 vs. uniprot
Match: A0A4R3XVY0_9PROT (Small ligand-binding sensory domain FIST n=1 Tax=Sulfurirhabdus autotrophica TaxID=1706046 RepID=A0A4R3XVY0_9PROT)

HSP 1 Score: 219 bits (559), Expect = 3.300e-68
Identity = 100/151 (66.23%), Postives = 123/151 (81.46%), Query Frame = 1
Query:    4 DVLREDVGEVIARDLQRMAGYIFAALPITGSDTGDYLVRNIVGVDEEQKLVGIGELLDEGAPFMFCRRDGASAIQDLERMLDDVARRVRGKARGALYYSCVARGRHQFGEDSEELRMVQAALGDIPLVGFFANGEIFHNRLYAYTGVLSVF 456
            DVL+E++GEV++RDL R+AGYIF  LPI GSDTGDYLVRN++G+D EQKL+ IG+ L  GAP  FCRRDGASA++D+ERML+D+        +GA+YYSC+ RG   FG DSEEL+M+  ALGDIPLVGFFANGEI H+RLY YTGVL+VF
Sbjct:  219 DVLKEEIGEVLSRDLNRVAGYIFVGLPIAGSDTGDYLVRNLIGIDVEQKLLAIGDYLQPGAPLQFCRRDGASAVEDMERMLNDIKSGSAATPKGAVYYSCLGRGESMFGPDSEELKMISRALGDIPLVGFFANGEISHDRLYGYTGVLTVF 369          
BLAST of mRNA_M-pyrifera_M_contig117956.3718.1 vs. uniprot
Match: A0A6L7MCF5_9PROT (Histidine kinase n=2 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A6L7MCF5_9PROT)

HSP 1 Score: 217 bits (552), Expect = 4.070e-67
Identity = 98/152 (64.47%), Postives = 126/152 (82.89%), Query Frame = 1
Query:    1 LDVLREDVGEVIARDLQRMAGYIFAALPITGSDTGDYLVRNIVGVDEEQKLVGIGELLDEGAPFMFCRRDGASAIQDLERMLDDVARRVRGKARGALYYSCVARGRHQFGEDSEELRMVQAALGDIPLVGFFANGEIFHNRLYAYTGVLSVF 456
            LDV RED+GEV+A+DL ++AGYIFA LPI  SDTGDYLVRNI+G+DE++K++ +G+ L EG+ FM CRRDG SA +D+ RML  +  R++   RG +YY+C+ RGR+QFGE+SEEL+M+Q  LGD PLVGFFANGEIFHNRLY YTGVL++F
Sbjct:  221 LDVFREDIGEVLAKDLHKIAGYIFAGLPIEYSDTGDYLVRNIIGIDEQEKIIAVGDYLYEGSKFMVCRRDGNSAREDMLRMLGTMKSRMQDSPRGGVYYTCLGRGRYQFGENSEELKMIQDTLGDFPLVGFFANGEIFHNRLYGYTGVLTLF 372          
BLAST of mRNA_M-pyrifera_M_contig117956.3718.1 vs. uniprot
Match: A0A7D7ZMF4_9GAMM (Histidine kinase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A7D7ZMF4_9GAMM)

HSP 1 Score: 216 bits (551), Expect = 5.760e-67
Identity = 101/152 (66.45%), Postives = 126/152 (82.89%), Query Frame = 1
Query:    1 LDVLREDVGEVIARDLQRMAGYIFAALPITGSDTGDYLVRNIVGVDEEQKLVGIGELLDEGAPFMFCRRDGASAIQDLERMLDDVARRVRGKARGALYYSCVARGRHQFGEDSEELRMVQAALGDIPLVGFFANGEIFHNRLYAYTGVLSVF 456
            LDVLREDVGEV+A+DL ++AGYIFA +PI  SDTGDYLVRNI+G DEE+K++ +G+ L EG+ FMFCRRDG SA +D+ RML  +  R++G  RG LYY+C+ RGR+QFG++SEEL M+Q  LG+ PLVGFFANGEIFHNRLY YTGVL +F
Sbjct:  221 LDVLREDVGEVLAKDLNKIAGYIFAGMPIEFSDTGDYLVRNIIGFDEEEKVIAVGDYLYEGSKFMFCRRDGNSASEDMLRMLATMKSRLQGIPRGGLYYTCLGRGRYQFGDNSEELIMIQDELGEFPLVGFFANGEIFHNRLYGYTGVLVLF 372          
BLAST of mRNA_M-pyrifera_M_contig117956.3718.1 vs. uniprot
Match: A0A0S8DQJ4_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium SG8_47 TaxID=1703406 RepID=A0A0S8DQJ4_9GAMM)

HSP 1 Score: 213 bits (543), Expect = 4.610e-66
Identity = 97/152 (63.82%), Postives = 124/152 (81.58%), Query Frame = 1
Query:    1 LDVLREDVGEVIARDLQRMAGYIFAALPITGSDTGDYLVRNIVGVDEEQKLVGIGELLDEGAPFMFCRRDGASAIQDLERMLDDVARRVRGKARGALYYSCVARGRHQFGEDSEELRMVQAALGDIPLVGFFANGEIFHNRLYAYTGVLSVF 456
            LDV  +D+GEV+ARDLQR+AGYIF  LP+ G+DTGDYLVRN++G+D EQ+L+ +G+ L  GAP MFCRRDG SA++DLERML+ V RR     RGALY+SC+ RGR  FG++S+ELR+V   LGD+PLVGF+ANGEI  +RLY YTGVL++F
Sbjct:  196 LDVFFDDIGEVLARDLQRVAGYIFVGLPVRGTDTGDYLVRNLIGIDTEQRLLAVGDHLTSGAPIMFCRRDGHSALEDLERMLNSVKRRAASPIRGALYFSCLGRGRSLFGDESQELRLVAETLGDVPLVGFYANGEICGDRLYGYTGVLTLF 347          
BLAST of mRNA_M-pyrifera_M_contig117956.3718.1 vs. uniprot
Match: A0A7K4ERL0_9EURY (Histidine kinase n=2 Tax=Halobacteria archaeon TaxID=2670410 RepID=A0A7K4ERL0_9EURY)

HSP 1 Score: 214 bits (545), Expect = 5.000e-66
Identity = 95/152 (62.50%), Postives = 125/152 (82.24%), Query Frame = 1
Query:    1 LDVLREDVGEVIARDLQRMAGYIFAALPITGSDTGDYLVRNIVGVDEEQKLVGIGELLDEGAPFMFCRRDGASAIQDLERMLDDVARRVRGKARGALYYSCVARGRHQFGEDSEELRMVQAALGDIPLVGFFANGEIFHNRLYAYTGVLSVF 456
            LDV ++D+GEV++ DL R+AGYIFA  P+ GSDTGDYLVRN++G+D E+KL+ +G+ L+  A  MFCRRDG +A +D+ RML D+ARR +G+ RG +YYSC+ RGR+QFGE+SEEL M++  LGD PLVGFFANGEI H+RLY YTGVL++F
Sbjct:  224 LDVFKQDIGEVLSHDLSRVAGYIFAGFPVPGSDTGDYLVRNLIGIDPEEKLLAVGDNLENDARIMFCRRDGDAAREDMMRMLSDLARRAKGQIRGGVYYSCLGRGRYQFGENSEELNMIRDQLGDFPLVGFFANGEISHSRLYGYTGVLTLF 375          
BLAST of mRNA_M-pyrifera_M_contig117956.3718.1 vs. uniprot
Match: B8GQT6_THISH (Uncharacterized protein n=2 Tax=Thioalkalivibrio TaxID=106633 RepID=B8GQT6_THISH)

HSP 1 Score: 214 bits (544), Expect = 6.170e-66
Identity = 101/152 (66.45%), Postives = 122/152 (80.26%), Query Frame = 1
Query:    1 LDVLREDVGEVIARDLQRMAGYIFAALPITGSDTGDYLVRNIVGVDEEQKLVGIGELLDEGAPFMFCRRDGASAIQDLERMLDDVARRVRGKARGALYYSCVARGRHQFGEDSEELRMVQAALGDIPLVGFFANGEIFHNRLYAYTGVLSVF 456
            LDV  ED+GEV+ARDLQR  G+I A LP+ GSDT DYLVRN+V VD  Q+LV IGE + EG   +FCRRDG +A++DL+RML D+ RR    ARGA+Y SC+ RGRHQFG+DS+ELR++   LGDIPLVGFFANGEIFHNRLY YTGVL++F
Sbjct:  219 LDVFEEDIGEVLARDLQRAGGFIVAGLPVPGSDTRDYLVRNLVAVDTGQRLVAIGEHVREGDEILFCRRDGNAALEDLKRMLADLKRRAPNGARGAVYVSCLGRGRHQFGDDSQELRIIAEELGDIPLVGFFANGEIFHNRLYGYTGVLTLF 370          
BLAST of mRNA_M-pyrifera_M_contig117956.3718.1 vs. uniprot
Match: A0A661DZW8_9GAMM (Histidine kinase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A661DZW8_9GAMM)

HSP 1 Score: 213 bits (541), Expect = 2.000e-65
Identity = 94/152 (61.84%), Postives = 125/152 (82.24%), Query Frame = 1
Query:    1 LDVLREDVGEVIARDLQRMAGYIFAALPITGSDTGDYLVRNIVGVDEEQKLVGIGELLDEGAPFMFCRRDGASAIQDLERMLDDVARRVRGKARGALYYSCVARGRHQFGEDSEELRMVQAALGDIPLVGFFANGEIFHNRLYAYTGVLSVF 456
            LDV +ED+GEV+A+DL R+AGYI+  LPI GSDTGDYLVRN++G+D ++KL+ +G+ L++  P MFCRRDG +A +D+ RML D+ +R  G  +G +YY+C+ RGR+QFGEDSEEL+++Q  LGD PLVGFFANGEI HNRLY YTGVL++F
Sbjct:  224 LDVFKEDIGEVLAKDLSRVAGYIYIGLPIPGSDTGDYLVRNLMGIDPDEKLLAVGDNLEDETPVMFCRRDGDTAREDMIRMLMDLRKRAHGPIKGGVYYTCLGRGRNQFGEDSEELKLIQEQLGDFPLVGFFANGEISHNRLYGYTGVLTLF 375          
BLAST of mRNA_M-pyrifera_M_contig117956.3718.1 vs. uniprot
Match: UPI00036A679F (FIST C-terminal domain-containing protein n=1 Tax=Thioalkalivibrio thiocyanodenitrificans TaxID=243063 RepID=UPI00036A679F)

HSP 1 Score: 212 bits (540), Expect = 2.680e-65
Identity = 101/152 (66.45%), Postives = 118/152 (77.63%), Query Frame = 1
Query:    1 LDVLREDVGEVIARDLQRMAGYIFAALPITGSDTGDYLVRNIVGVDEEQKLVGIGELLDEGAPFMFCRRDGASAIQDLERMLDDVARRVRGKARGALYYSCVARGRHQFGEDSEELRMVQAALGDIPLVGFFANGEIFHNRLYAYTGVLSVF 456
            LDV  ED+GEV+ARDLQR  G+I AA P+ GSDT DYLVRN+V VD  Q+LV +G+ + EG   MFCRRD  +A+ DL RML D+  R  G ARGALY+SC+ RGRHQFGEDS ELR +   LGDIPLVGFFANGEIFHNRLY YTGVL++F
Sbjct:  222 LDVFEEDIGEVLARDLQRAGGFIVAAFPVPGSDTRDYLVRNLVAVDTGQRLVAVGDRVTEGDRIMFCRRDPNAAMDDLRRMLADLRHRAPGGARGALYFSCLGRGRHQFGEDSRELRTISEELGDIPLVGFFANGEIFHNRLYGYTGVLTLF 373          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig117956.3718.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3D5DCY2_9GAMM7.330e-8177.78Histidine kinase n=1 Tax=Gammaproteobacteria bacte... [more]
A0A6L8EKF3_9GAMM9.570e-7167.97Histidine kinase n=1 Tax=Gammaproteobacteria bacte... [more]
A0A4R3XVY0_9PROT3.300e-6866.23Small ligand-binding sensory domain FIST n=1 Tax=S... [more]
A0A6L7MCF5_9PROT4.070e-6764.47Histidine kinase n=2 Tax=Proteobacteria bacterium ... [more]
A0A7D7ZMF4_9GAMM5.760e-6766.45Histidine kinase n=1 Tax=Gammaproteobacteria bacte... [more]
A0A0S8DQJ4_9GAMM4.610e-6663.82Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
A0A7K4ERL0_9EURY5.000e-6662.50Histidine kinase n=2 Tax=Halobacteria archaeon Tax... [more]
B8GQT6_THISH6.170e-6666.45Uncharacterized protein n=2 Tax=Thioalkalivibrio T... [more]
A0A661DZW8_9GAMM2.000e-6561.84Histidine kinase n=1 Tax=Gammaproteobacteria bacte... [more]
UPI00036A679F2.680e-6566.45FIST C-terminal domain-containing protein n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig117956contigM-pyrifera_M_contig117956:3..464 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score212.6
Seed ortholog evalue1.3e-52
Seed eggNOG ortholog396588.Tgr7_3242
Hectar predicted targeting categoryother localisation
EggNOG free text desc.FIST N domain
EggNOG OGs1MUX9@1224,1RPGR@1236,1WWYY@135613,COG4398@1,COG4398@2
COG Functional cat.S
Best tax levelChromatiales
Best eggNOG OGNA|NA|NA
Exons1
Model size462
Cds size462
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815698.191905-CDS-M-pyrifera_M_contig117956:2..4641622815698.191905-CDS-M-pyrifera_M_contig117956:2..464Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117956 3..464 +
1692277527.2456875-CDS-M-pyrifera_M_contig117956:2..4641692277527.2456875-CDS-M-pyrifera_M_contig117956:2..464Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117956 3..464 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig117956.3718.1prot_M-pyrifera_M_contig117956.3718.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig117956 3..464 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig117956.3718.1

>prot_M-pyrifera_M_contig117956.3718.1 ID=prot_M-pyrifera_M_contig117956.3718.1|Name=mRNA_M-pyrifera_M_contig117956.3718.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=154bp
LDVLREDVGEVIARDLQRMAGYIFAALPITGSDTGDYLVRNIVGVDEEQK
LVGIGELLDEGAPFMFCRRDGASAIQDLERMLDDVARRVRGKARGALYYS
CVARGRHQFGEDSEELRMVQAALGDIPLVGFFANGEIFHNRLYAYTGVLS
VFC*
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mRNA from alignment at M-pyrifera_M_contig117956:3..464+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig117956.3718.1 ID=mRNA_M-pyrifera_M_contig117956.3718.1|Name=mRNA_M-pyrifera_M_contig117956.3718.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=462bp|location=Sequence derived from alignment at M-pyrifera_M_contig117956:3..464+ (Macrocystis pyrifera P11B4 male)
CTCGATGTACTGCGCGAAGACGTCGGCGAGGTGATCGCGCGCGACCTCCA GCGTATGGCCGGTTATATATTCGCGGCGTTGCCGATCACGGGTTCGGATA CGGGCGATTATCTCGTGCGCAATATCGTCGGCGTCGACGAAGAACAGAAG CTCGTCGGGATTGGCGAACTGCTCGACGAGGGTGCGCCGTTCATGTTTTG TCGCCGCGACGGCGCATCGGCGATTCAGGATCTCGAACGCATGCTCGACG ACGTCGCGCGCCGGGTTCGGGGCAAGGCGCGCGGCGCGCTGTATTACTCC TGCGTCGCGCGCGGGCGCCATCAGTTCGGCGAGGACAGCGAGGAACTGCG GATGGTGCAGGCCGCACTCGGGGACATACCGCTCGTCGGCTTCTTCGCGA ATGGCGAGATTTTCCATAATCGTCTGTATGCCTACACGGGAGTGCTGAGC GTCTTCTGCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig117956:3..464+

>mRNA_M-pyrifera_M_contig117956.3718.1 ID=mRNA_M-pyrifera_M_contig117956.3718.1|Name=mRNA_M-pyrifera_M_contig117956.3718.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=924bp|location=Sequence derived from alignment at M-pyrifera_M_contig117956:3..464+ (Macrocystis pyrifera P11B4 male)
CTCGATGTACTGCGCGAAGACGTCGGCGAGGTGATCGCGCGCGACCTCCA
GCGTATGGCCGGTTATATATTCGCGGCGTTGCCGATCACGGGTTCGGATA
CGGGCGATTATCTCGTGCGCAATATCGTCGGCGTCGACGAAGAACAGAAG
CTCGTCGGGATTGGCGAACTGCTCGACGAGGGTGCGCCGTTCATGTTTTG
TCGCCGCGACGGCGCATCGGCGATTCAGGATCTCGAACGCATGCTCGACG
ACGTCGCGCGCCGGGTTCGGGGCAAGGCGCGCGGCGCGCTGTATTACTCC
TGCGTCGCGCGCGGGCGCCATCAGTTCGGCGAGGACAGCGAGGAACTGCG
GATGGTGCAGGCCGCACTCGGGGACATACCGCTCGTCGGCTTCTTCGCGA
ATGGCGAGATTTTCCATAATCGTCTGTATGCCTACACGGGAGTGCTGAGC
GTCTTCTGCTGACTCGATGTACTGCGCGAAGACGTCGGCGAGGTGATCGC
GCGCGACCTCCAGCGTATGGCCGGTTATATATTCGCGGCGTTGCCGATCA
CGGGTTCGGATACGGGCGATTATCTCGTGCGCAATATCGTCGGCGTCGAC
GAAGAACAGAAGCTCGTCGGGATTGGCGAACTGCTCGACGAGGGTGCGCC
GTTCATGTTTTGTCGCCGCGACGGCGCATCGGCGATTCAGGATCTCGAAC
GCATGCTCGACGACGTCGCGCGCCGGGTTCGGGGCAAGGCGCGCGGCGCG
CTGTATTACTCCTGCGTCGCGCGCGGGCGCCATCAGTTCGGCGAGGACAG
CGAGGAACTGCGGATGGTGCAGGCCGCACTCGGGGACATACCGCTCGTCG
GCTTCTTCGCGAATGGCGAGATTTTCCATAATCGTCTGTATGCCTACACG
GGAGTGCTGAGCGTCTTCTGCTGA
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