mRNA_M-pyrifera_M_contig117867.3697.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig117867.3697.1
Unique NamemRNA_M-pyrifera_M_contig117867.3697.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig117867.3697.1 vs. uniprot
Match: A0A8D9EXC3_9HEMI (Zinc finger protein 2 (Fragment) n=2 Tax=Cacopsylla melanoneura TaxID=428564 RepID=A0A8D9EXC3_9HEMI)

HSP 1 Score: 56.2 bits (134), Expect = 2.900e-7
Identity = 24/42 (57.14%), Postives = 30/42 (71.43%), Query Frame = 1 
Query:   10 CGRSFKTSGGLRQHVSSFHDGVRYGCSRCSKSFTSRSNLRVH 135
            C +SF   G L +HV S H+G++Y CS+CSKSF  RSNLR H
Sbjct:    2 CPKSFSRKGELNKHVRSTHEGIKYPCSKCSKSFLDRSNLRRH 43
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BLAST of mRNA_M-pyrifera_M_contig117867.3697.1 vs. uniprot
Match: A0A8D9FGU2_9HEMI (Zinc finger protein 614 n=6 Tax=Cacopsylla melanoneura TaxID=428564 RepID=A0A8D9FGU2_9HEMI)

HSP 1 Score: 51.2 bits (121), Expect = 9.370e-5
Identity = 19/45 (42.22%), Postives = 30/45 (66.67%), Query Frame = 1 
Query:    1 CDSCGRSFKTSGGLRQHVSSFHDGVRYGCSRCSKSFTSRSNLRVH 135
            C +CG++FK    +  H  +FH+GVRY C++C K F ++S L +H
Sbjct:  413 CGTCGKNFKFKNSMVTHRKTFHEGVRYKCTKCPKIFMAQSKLNIH 457
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig117867.3697.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A8D9EXC3_9HEMI2.900e-757.14Zinc finger protein 2 (Fragment) n=2 Tax=Cacopsyll... [more]
A0A8D9FGU2_9HEMI9.370e-542.22Zinc finger protein 614 n=6 Tax=Cacopsylla melanon... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig117867contigM-pyrifera_M_contig117867:133..540 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size408
Cds size408
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815696.6641858-CDS-M-pyrifera_M_contig117867:132..5401622815696.6641858-CDS-M-pyrifera_M_contig117867:132..540Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117867 133..540 -
1692277526.373728-CDS-M-pyrifera_M_contig117867:132..5401692277526.373728-CDS-M-pyrifera_M_contig117867:132..540Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117867 133..540 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig117867.3697.1prot_M-pyrifera_M_contig117867.3697.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig117867 133..540 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig117867.3697.1

>prot_M-pyrifera_M_contig117867.3697.1 ID=prot_M-pyrifera_M_contig117867.3697.1|Name=mRNA_M-pyrifera_M_contig117867.3697.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=136bp
CDSCGRSFKTSGGLRQHVSSFHDGVRYGCSRCSKSFTSRSNLRVHEAVHD
GVRYPCSRCSKSFTDRSSLNRHKARHDGVEHVCGDCGKKYKDRSSLGAHR
KAVHLGVRYPCGECSKSFTTKHYALLHRKKAHGVE*
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mRNA from alignment at M-pyrifera_M_contig117867:133..540-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig117867.3697.1 ID=mRNA_M-pyrifera_M_contig117867.3697.1|Name=mRNA_M-pyrifera_M_contig117867.3697.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=408bp|location=Sequence derived from alignment at M-pyrifera_M_contig117867:133..540- (Macrocystis pyrifera P11B4 male)
TGTGATAGTTGTGGGAGGTCGTTCAAGACATCAGGGGGGCTTCGACAGCA
TGTATCTTCTTTTCATGATGGTGTTCGCTATGGTTGCTCACGTTGCAGCA
AGAGCTTCACTTCACGATCCAATCTTCGTGTTCATGAGGCGGTGCATGAT
GGTGTTCGTTATCCTTGCTCTCGTTGCAGCAAGAGCTTCACTGATCGATC
CAGTCTTAATCGCCATAAGGCGCGTCATGATGGTGTGGAGCATGTTTGTG
GTGATTGTGGGAAGAAGTACAAGGATCGAAGTAGCCTTGGTGCTCACCGC
AAGGCAGTTCATTTGGGTGTTCGCTATCCTTGTGGTGAATGTTCGAAGTC
GTTCACTACGAAGCATTATGCTCTTCTTCACCGCAAGAAAGCGCATGGTG
TGGAATAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig117867:133..540-

>mRNA_M-pyrifera_M_contig117867.3697.1 ID=mRNA_M-pyrifera_M_contig117867.3697.1|Name=mRNA_M-pyrifera_M_contig117867.3697.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=816bp|location=Sequence derived from alignment at M-pyrifera_M_contig117867:133..540- (Macrocystis pyrifera P11B4 male)
TGTGATAGTTGTGGGAGGTCGTTCAAGACATCAGGGGGGCTTCGACAGCA
TGTATCTTCTTTTCATGATGGTGTTCGCTATGGTTGCTCACGTTGCAGCA
AGAGCTTCACTTCACGATCCAATCTTCGTGTTCATGAGGCGGTGCATGAT
GGTGTTCGTTATCCTTGCTCTCGTTGCAGCAAGAGCTTCACTGATCGATC
CAGTCTTAATCGCCATAAGGCGCGTCATGATGGTGTGGAGCATGTTTGTG
GTGATTGTGGGAAGAAGTACAAGGATCGAAGTAGCCTTGGTGCTCACCGC
AAGGCAGTTCATTTGGGTGTTCGCTATCCTTGTGGTGAATGTTCGAAGTC
GTTCACTACGAAGCATTATGCTCTTCTTCACCGCAAGAAAGCGCATGGTG
TGGAATAGTGTGATAGTTGTGGGAGGTCGTTCAAGACATCAGGGGGGCTT
CGACAGCATGTATCTTCTTTTCATGATGGTGTTCGCTATGGTTGCTCACG
TTGCAGCAAGAGCTTCACTTCACGATCCAATCTTCGTGTTCATGAGGCGG
TGCATGATGGTGTTCGTTATCCTTGCTCTCGTTGCAGCAAGAGCTTCACT
GATCGATCCAGTCTTAATCGCCATAAGGCGCGTCATGATGGTGTGGAGCA
TGTTTGTGGTGATTGTGGGAAGAAGTACAAGGATCGAAGTAGCCTTGGTG
CTCACCGCAAGGCAGTTCATTTGGGTGTTCGCTATCCTTGTGGTGAATGT
TCGAAGTCGTTCACTACGAAGCATTATGCTCTTCTTCACCGCAAGAAAGC
GCATGGTGTGGAATAG
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