mRNA_M-pyrifera_M_contig117855.3695.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig117855.3695.1
Unique NamemRNA_M-pyrifera_M_contig117855.3695.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig117855.3695.1 vs. uniprot
Match: A0A2V7A620_9BACT (Uncharacterized protein n=1 Tax=Candidatus Rokubacteria bacterium TaxID=2053607 RepID=A0A2V7A620_9BACT)

HSP 1 Score: 55.5 bits (132), Expect = 2.910e-9
Identity = 26/41 (63.41%), Postives = 34/41 (82.93%), Query Frame = 1 
Query:    1 MAKARKKKIVEPPRTSNEVRGIMLQYFYDRNQNSTSARGKK 123
            MA  +K K ++P R++NE+R IMLQYFYDRN+ +TSARGKK
Sbjct:    1 MAARQKTKAIQPARSNNEIRTIMLQYFYDRNKAATSARGKK 41
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BLAST of mRNA_M-pyrifera_M_contig117855.3695.1 vs. uniprot
Match: A0A7S6MF09_9BACT (Uncharacterized protein n=1 Tax=Phycisphaeraceae bacterium TaxID=2026777 RepID=A0A7S6MF09_9BACT)

HSP 1 Score: 50.8 bits (120), Expect = 2.730e-6
Identity = 24/35 (68.57%), Postives = 29/35 (82.86%), Query Frame = 1 
Query:   19 KKIVEPPRTSNEVRGIMLQYFYDRNQNSTSARGKK 123
            KK   P R++ E+R IMLQYFYDRN+N+TSARGKK
Sbjct:    3 KKPTIPSRSNTEIRTIMLQYFYDRNKNATSARGKK 37
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BLAST of mRNA_M-pyrifera_M_contig117855.3695.1 vs. uniprot
Match: A0A3D3JHE4_9BACT (Uncharacterized protein n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A3D3JHE4_9BACT)

HSP 1 Score: 50.1 bits (118), Expect = 5.270e-6
Identity = 23/36 (63.89%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:   16 KKKIVEPPRTSNEVRGIMLQYFYDRNQNSTSARGKK 123
            KKK+ E    +NE+R ++LQYFYDRN N+TSARGKK
Sbjct:    3 KKKLSEVRPANNEIRKVLLQYFYDRNNNATSARGKK 38
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BLAST of mRNA_M-pyrifera_M_contig117855.3695.1 vs. uniprot
Match: A0A532C4U1_9BACT (Uncharacterized protein n=1 Tax=Nitrospira sp. TaxID=70125 RepID=A0A532C4U1_9BACT)

HSP 1 Score: 47.8 bits (112), Expect = 3.690e-5
Identity = 22/36 (61.11%), Postives = 28/36 (77.78%), Query Frame = 1 
Query:   16 KKKIVEPPRTSNEVRGIMLQYFYDRNQNSTSARGKK 123
            K K    P ++N++R IMLQYFYDRN N+TS+RGKK
Sbjct:    3 KGKTARVPPSNNDIRRIMLQYFYDRNTNATSSRGKK 38
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig117855.3695.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2V7A620_9BACT2.910e-963.41Uncharacterized protein n=1 Tax=Candidatus Rokubac... [more]
A0A7S6MF09_9BACT2.730e-668.57Uncharacterized protein n=1 Tax=Phycisphaeraceae b... [more]
A0A3D3JHE4_9BACT5.270e-663.89Uncharacterized protein n=1 Tax=Bacteroidetes bact... [more]
A0A532C4U1_9BACT3.690e-561.11Uncharacterized protein n=1 Tax=Nitrospira sp. Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig117855contigM-pyrifera_M_contig117855:1..123 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size123
Cds size123
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815696.5684192-CDS-M-pyrifera_M_contig117855:0..1231622815696.5684192-CDS-M-pyrifera_M_contig117855:0..123Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117855 1..123 -
1692277526.346018-CDS-M-pyrifera_M_contig117855:0..1231692277526.346018-CDS-M-pyrifera_M_contig117855:0..123Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117855 1..123 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig117855.3695.1prot_M-pyrifera_M_contig117855.3695.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig117855 1..123 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig117855.3695.1

>prot_M-pyrifera_M_contig117855.3695.1 ID=prot_M-pyrifera_M_contig117855.3695.1|Name=mRNA_M-pyrifera_M_contig117855.3695.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=41bp
MAKARKKKIVEPPRTSNEVRGIMLQYFYDRNQNSTSARGKK
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mRNA from alignment at M-pyrifera_M_contig117855:1..123-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig117855.3695.1 ID=mRNA_M-pyrifera_M_contig117855.3695.1|Name=mRNA_M-pyrifera_M_contig117855.3695.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=123bp|location=Sequence derived from alignment at M-pyrifera_M_contig117855:1..123- (Macrocystis pyrifera P11B4 male)
ATGGCAAAAGCGCGGAAAAAGAAGATCGTAGAACCGCCGCGAACGTCGAA
TGAGGTTCGTGGAATAATGCTGCAGTACTTCTACGACCGCAATCAGAATT
CTACGAGCGCGCGAGGAAAGAAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig117855:1..123-

>mRNA_M-pyrifera_M_contig117855.3695.1 ID=mRNA_M-pyrifera_M_contig117855.3695.1|Name=mRNA_M-pyrifera_M_contig117855.3695.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=246bp|location=Sequence derived from alignment at M-pyrifera_M_contig117855:1..123- (Macrocystis pyrifera P11B4 male)
ATGGCAAAAGCGCGGAAAAAGAAGATCGTAGAACCGCCGCGAACGTCGAA
TGAGGTTCGTGGAATAATGCTGCAGTACTTCTACGACCGCAATCAGAATT
CTACGAGCGCGCGAGGAAAGAAGATGGCAAAAGCGCGGAAAAAGAAGATC
GTAGAACCGCCGCGAACGTCGAATGAGGTTCGTGGAATAATGCTGCAGTA
CTTCTACGACCGCAATCAGAATTCTACGAGCGCGCGAGGAAAGAAG
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