mRNA_M-pyrifera_M_contig117819.3687.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig117819.3687.1
Unique NamemRNA_M-pyrifera_M_contig117819.3687.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig117819.3687.1 vs. uniprot
Match: A0A5A8CXJ8_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CXJ8_CAFRO)

HSP 1 Score: 117 bits (292), Expect = 5.530e-28
Identity = 57/123 (46.34%), Postives = 75/123 (60.98%), Query Frame = 1 
Query:    1 GRRMAYIAVHKMDWMDLRLAVHRYGTKKPIVRRNTWGTADDELPPGYKELAMRGVELQRLRHGKGMFRHRDERGVYSGGWRQNMRHGLGVEMNAXXXXXXXXXXXXXXXXXXXVYAGGDVARG 369
            GRR+AY+A HK++W D  LA+ + G  KP+ ++  W  A D+LP  Y  + MRGV + RL+HG+GM++ RDERG YSG WR   RHGLGVE+NA                   V+A GDV RG
Sbjct:  249 GRRLAYVATHKLNWADFALAMSKRGIGKPMTQKGPW--AKDQLPDSYTAVTMRGVRVVRLQHGRGMYKFRDERGFYSGQWRLGRRHGLGVEINAQGRYTGRLEREWRRGEGTLVFANGDVYRG 369
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BLAST of mRNA_M-pyrifera_M_contig117819.3687.1 vs. uniprot
Match: A0A812JET1_9DINO (Rsph1 protein (Fragment) n=3 Tax=Sar TaxID=2698737 RepID=A0A812JET1_9DINO)

HSP 1 Score: 117 bits (292), Expect = 6.050e-28
Identity = 57/123 (46.34%), Postives = 75/123 (60.98%), Query Frame = 1 
Query:    1 GRRMAYIAVHKMDWMDLRLAVHRYGTKKPIVRRNTWGTADDELPPGYKELAMRGVELQRLRHGKGMFRHRDERGVYSGGWRQNMRHGLGVEMNAXXXXXXXXXXXXXXXXXXXVYAGGDVARG 369
            GRR+AY+A HK++W D  LA+ + G  KP+ ++  W  A D+LP  Y  + MRGV + RL+HG+GM++ RDERG YSG WR   RHGLGVE+NA                   V+A GDV RG
Sbjct:  417 GRRLAYVATHKLNWADFALAMSKRGIGKPMTQKGPW--AKDQLPDSYTAVTMRGVRVVRLQHGRGMYKFRDERGFYSGQWRLGRRHGLGVEINAQGRYTGRLEREWRRGEGTLVFANGDVYRG 537
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig117819.3687.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A5A8CXJ8_CAFRO5.530e-2846.34Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A0A812JET1_9DINO6.050e-2846.34Rsph1 protein (Fragment) n=3 Tax=Sar TaxID=2698737... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig117819contigM-pyrifera_M_contig117819:114..488 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size375
Cds size366
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815696.226981-UTR-M-pyrifera_M_contig117819:113..1221622815696.226981-UTR-M-pyrifera_M_contig117819:113..122Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig117819 114..122 +
1692277526.2040293-UTR-M-pyrifera_M_contig117819:113..1221692277526.2040293-UTR-M-pyrifera_M_contig117819:113..122Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig117819 114..122 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815696.2445314-CDS-M-pyrifera_M_contig117819:122..4881622815696.2445314-CDS-M-pyrifera_M_contig117819:122..488Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117819 123..488 +
1692277526.213453-CDS-M-pyrifera_M_contig117819:122..4881692277526.213453-CDS-M-pyrifera_M_contig117819:122..488Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117819 123..488 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig117819.3687.1prot_M-pyrifera_M_contig117819.3687.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig117819 123..488 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig117819.3687.1

>prot_M-pyrifera_M_contig117819.3687.1 ID=prot_M-pyrifera_M_contig117819.3687.1|Name=mRNA_M-pyrifera_M_contig117819.3687.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=122bp
MAYIAVHKMDWMDLRLAVHRYGTKKPIVRRNTWGTADDELPPGYKELAMR
GVELQRLRHGKGMFRHRDERGVYSGGWRQNMRHGLGVEMNARGKYTGRFE
RGFRRGGGTQVYAGGDVARGEW
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mRNA from alignment at M-pyrifera_M_contig117819:114..488+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig117819.3687.1 ID=mRNA_M-pyrifera_M_contig117819.3687.1|Name=mRNA_M-pyrifera_M_contig117819.3687.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=375bp|location=Sequence derived from alignment at M-pyrifera_M_contig117819:114..488+ (Macrocystis pyrifera P11B4 male)
GGAAGGAGAATGGCGTATATTGCGGTGCACAAGATGGATTGGATGGACTT
GCGACTGGCAGTGCATCGGTATGGCACCAAGAAGCCTATTGTACGAAGGA
ATACATGGGGTACTGCTGATGATGAGCTTCCTCCCGGGTACAAGGAGTTA
GCAATGCGAGGAGTGGAACTGCAGCGCCTACGCCATGGGAAAGGAATGTT
TCGCCATCGGGATGAACGAGGTGTCTATTCTGGTGGATGGCGACAAAATA
TGCGCCACGGACTAGGAGTGGAAATGAATGCCCGAGGCAAGTACACTGGG
AGATTTGAACGTGGATTCCGCCGTGGTGGAGGGACTCAAGTGTATGCTGG
GGGTGATGTGGCACGTGGGGAATGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig117819:114..488+

>mRNA_M-pyrifera_M_contig117819.3687.1 ID=mRNA_M-pyrifera_M_contig117819.3687.1|Name=mRNA_M-pyrifera_M_contig117819.3687.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=732bp|location=Sequence derived from alignment at M-pyrifera_M_contig117819:114..488+ (Macrocystis pyrifera P11B4 male)
ATGGCGTATATTGCGGTGCACAAGATGGATTGGATGGACTTGCGACTGGC
AGTGCATCGGTATGGCACCAAGAAGCCTATTGTACGAAGGAATACATGGG
GTACTGCTGATGATGAGCTTCCTCCCGGGTACAAGGAGTTAGCAATGCGA
GGAGTGGAACTGCAGCGCCTACGCCATGGGAAAGGAATGTTTCGCCATCG
GGATGAACGAGGTGTCTATTCTGGTGGATGGCGACAAAATATGCGCCACG
GACTAGGAGTGGAAATGAATGCCCGAGGCAAGTACACTGGGAGATTTGAA
CGTGGATTCCGCCGTGGTGGAGGGACTCAAGTGTATGCTGGGGGTGATGT
GGCACGTGGGGAATGGATGGCGTATATTGCGGTGCACAAGATGGATTGGA
TGGACTTGCGACTGGCAGTGCATCGGTATGGCACCAAGAAGCCTATTGTA
CGAAGGAATACATGGGGTACTGCTGATGATGAGCTTCCTCCCGGGTACAA
GGAGTTAGCAATGCGAGGAGTGGAACTGCAGCGCCTACGCCATGGGAAAG
GAATGTTTCGCCATCGGGATGAACGAGGTGTCTATTCTGGTGGATGGCGA
CAAAATATGCGCCACGGACTAGGAGTGGAAATGAATGCCCGAGGCAAGTA
CACTGGGAGATTTGAACGTGGATTCCGCCGTGGTGGAGGGACTCAAGTGT
ATGCTGGGGGTGATGTGGCACGTGGGGAATGG
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