mRNA_M-pyrifera_M_contig11781.3684.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig11781.3684.1 vs. uniprot
Match: A0A6H5JXR4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXR4_9PHAE) HSP 1 Score: 474 bits (1220), Expect = 2.740e-148 Identity = 254/458 (55.46%), Postives = 306/458 (66.81%), Query Frame = 1
Query: 1 RLNSEPKASFLFQMEVLHPLQNPRTDAKRLPVTVRS------EPTEAQRLPVTGVIHYYPYDGDKETRPQLWADEEDDESTTIEAFWEGRLVPESHAAAMSFFPLPK--------------------LVFTYMY-------------------------------VVCPGC----VFFFSRPSGFRTSQTLDIEYRFDDKIPSASNSKYDKWRRMTFGKGGATFVGDSRVKLPFMKPNVYGVINYFITEVDEDEEEGRGVGKFSLQRCPEDVFGDDDSSAKLYPVTELDPLRSAMSDDDWDKAMVAYRKLLPASTQVMMVGSDRPLPKRLTVSRVGKAEVTKVMVQVFDGNKKVLVQIPQGAALRVHSILEKSTGRGTYEPAMPSKCAKPFADRRFEKMFFFDPMTFKEPGEYRWTVAVAKEGAALNTKDARLLVVMCTITVLPGNPTKLVLEGEDWE 1191
RLN+ K SF+F MEVLHP+ NPR + KRLPVTVRS EA+R+PVTGVIHYYPYDG+KETRPQ+ DEEDDES TIEAFWEGRLVPESHAA + FFP K L F + + V+ PG + R + +TLD+EYRFDDK+PS ++SKY KWR MTFGKGG+TF +SRVKLPFMKPNVYGVINYF TE+D+D+EEG G F LQR PE++FGDDD+++KLYPVTELDP +S M DDW KA+ RK LP+ V+MVG++RPLPKRLT+ R GKAE TKV VQ+ DGNKK +VQIPQG ALR +LE+ EP + S AKPF ++++KM+FFDPM KEPG+Y WTVA+AKEGA++ K RLL V C ITVLPGNPTK LEG+DW+
Sbjct: 397 RLNAARKDSFMFHMEVLHPMVNPRDETKRLPVTVRSLLPDASVAAEARRVPVTGVIHYYPYDGEKETRPQVRPDEEDDESITIEAFWEGRLVPESHAAWLPFFPSHKPNKKEREALGTSWRRRIKGMLFFDWNFPISNNKLKLQFLEGDLHTALNANYLPPKHPAVIYPGVRGRNIQKEFREWLIKCHETLDVEYRFDDKMPSPASSKYIKWRTMTFGKGGSTFTTESRVKLPFMKPNVYGVINYFRTEMDDDDEEGPKQGMFCLQRSPEEIFGDDDAASKLYPVTELDPHKSLMKSDDWAKALSTMRKQLPSRLNVVMVGTERPLPKRLTI-RTGKAESTKVSVQILDGNKKPMVQIPQGKALRAIEVLERLGEDREPEPVL-SFLAKPFTGKQYDKMYFFDPMNIKEPGDYTWTVAIAKEGASIKNKSERLLSVTCNITVLPGNPTKSFLEGDDWD 852
BLAST of mRNA_M-pyrifera_M_contig11781.3684.1 vs. uniprot
Match: D8LFL8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFL8_ECTSI) HSP 1 Score: 258 bits (658), Expect = 4.270e-73 Identity = 124/210 (59.05%), Postives = 156/210 (74.29%), Query Frame = 1
Query: 562 EVDEDEEEGRGVGKFSLQRCPEDVFGDDDSSAKLYPVTELDPLRSAMSDDDWDKAMVAYRKLLPASTQVMMVGSDRPLPKRLTVSRVGKAEVTKVMVQVFDGNKKVLVQIPQGAALRVHSILEKSTGRGTYEPAMPSKCAKPFADRRFEKMFFFDPMTFKEPGEYRWTVAVAKEGAALNTKDARLLVVMCTITVLPGNPTKLVLEGEDWE 1191
++D+D+EEG G F LQR PE++FGDDD+++KLYPVTELDP +S M DDW KA+ RK LP+ V+M+G++RPLPKRLT+ R GKAE TKV VQ+ DGNKK +VQIPQG ALR ILE+ EP + S AKPF ++++KM+FFDPM KEPG+Y WTVA+AKEG ++ K RLL V C ITVLPGNPTK LEG+DW+
Sbjct: 2 QMDDDDEEGPKQGMFCLQRSPEEIFGDDDAASKLYPVTELDPHKSLMKPDDWTKALSTIRKQLPSRLNVVMLGTERPLPKRLTI-RTGKAESTKVSVQILDGNKKPMVQIPQGKALRAIEILERLGEDREPEPVL-SFLAKPFTGKQYDKMYFFDPMNIKEPGDYTWTVAIAKEGTSIKNKSERLLAVTCNITVLPGNPTKSFLEGDDWD 209
BLAST of mRNA_M-pyrifera_M_contig11781.3684.1 vs. uniprot
Match: D8LFL9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFL9_ECTSI) HSP 1 Score: 144 bits (364), Expect = 1.080e-34 Identity = 77/120 (64.17%), Postives = 87/120 (72.50%), Query Frame = 1
Query: 1 RLNSEPKASFLFQMEVLHPLQNPRTDAKRLPVTVRS------EPTEAQRLPVTGVIHYYPYDGDKETRPQLWADEEDDESTTIEAFWEGRLVPESHAAAMSFFPLPKLVFTYMYVVCPGC 342
RLN+ K SF+F MEVLHP+ NPR KRLPVTVRS EA+R+PVTGVIHYYPYDG+ ETRPQ+ DEEDDES TIEAFWEGRLVPESHAA + FFP K +T+ V C
Sbjct: 430 RLNAARKDSFMFHMEVLHPMVNPRDGTKRLPVTVRSLLPDASVAAEARRVPVTGVIHYYPYDGENETRPQVRPDEEDDESITIEAFWEGRLVPESHAAWLPFFPSHKPHWTWSTVSTTRC 549 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11781.3684.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig11781.3684.1 >prot_M-pyrifera_M_contig11781.3684.1 ID=prot_M-pyrifera_M_contig11781.3684.1|Name=mRNA_M-pyrifera_M_contig11781.3684.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=397bp RLNSEPKASFLFQMEVLHPLQNPRTDAKRLPVTVRSEPTEAQRLPVTGVIback to top mRNA from alignment at M-pyrifera_M_contig11781:723..7722+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig11781.3684.1 ID=mRNA_M-pyrifera_M_contig11781.3684.1|Name=mRNA_M-pyrifera_M_contig11781.3684.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=7000bp|location=Sequence derived from alignment at M-pyrifera_M_contig11781:723..7722+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig11781:723..7722+ >mRNA_M-pyrifera_M_contig11781.3684.1 ID=mRNA_M-pyrifera_M_contig11781.3684.1|Name=mRNA_M-pyrifera_M_contig11781.3684.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=2382bp|location=Sequence derived from alignment at M-pyrifera_M_contig11781:723..7722+ (Macrocystis pyrifera P11B4 male)back to top |