mRNA_M-pyrifera_M_contig11781.3683.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig11781.3683.1
Unique NamemRNA_M-pyrifera_M_contig11781.3683.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig11781.3683.1 vs. uniprot
Match: D7G5K9_ECTSI (HA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5K9_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 4.100e-20
Identity = 41/48 (85.42%), Postives = 43/48 (89.58%), Query Frame = 1 
Query:    1 QGSLLVPSSFVVPEKEPWPLCCQGMRLGAKVAAVRNQSLYVRADVARW 144
            +G LLVP+SFVVPE EPWPL CQGMRLGAKVA VRNQSLYVR DVARW
Sbjct:  263 EGCLLVPTSFVVPETEPWPLSCQGMRLGAKVAGVRNQSLYVRTDVARW 310
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BLAST of mRNA_M-pyrifera_M_contig11781.3683.1 vs. uniprot
Match: A0A7S1YI05_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1YI05_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 3.120e-7
Identity = 26/47 (55.32%), Postives = 32/47 (68.09%), Query Frame = 1 
Query:    4 GSLLVPSSFVVPEKE-PWPLCCQGMRLGAKVAAVRNQSLYVRADVAR 141
            G LLVP  F+VPEKE PWP    G+RLGA+V A+R+   YV A+  R
Sbjct:  243 GDLLVPQPFIVPEKEEPWPESTWGLRLGARVNAIRSHGTYVNANPER 289
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BLAST of mRNA_M-pyrifera_M_contig11781.3683.1 vs. uniprot
Match: B7FW16_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FW16_PHATC)

HSP 1 Score: 53.1 bits (126), Expect = 7.990e-7
Identity = 25/46 (54.35%), Postives = 30/46 (65.22%), Query Frame = 1 
Query:    4 GSLLVPSSFVVPEKEPWPLCCQGMRLGAKVAAVRNQSLYVRADVAR 141
            G LLVP  F VP K PWP    G+RLGA+V AVR+Q  +V A+  R
Sbjct:  369 GDLLVPQPFAVPSKAPWPQETWGLRLGARVNAVRSQGTFVNANPDR 414
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BLAST of mRNA_M-pyrifera_M_contig11781.3683.1 vs. uniprot
Match: A0A7S2Y6T8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2Y6T8_9STRA)

HSP 1 Score: 48.5 bits (114), Expect = 1.280e-5
Identity = 22/46 (47.83%), Postives = 29/46 (63.04%), Query Frame = 1 
Query:    4 GSLLVPSSFVVPEKEPWPLCCQGMRLGAKVAAVRNQSLYVRADVAR 141
            G LLVP  FVVP+   WP    G+RLGA+V A+R+Q  +V  +  R
Sbjct:   53 GDLLVPQPFVVPDTPDWPKDTWGLRLGARVNAIRSQGTFVNKNPER 98
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BLAST of mRNA_M-pyrifera_M_contig11781.3683.1 vs. uniprot
Match: A0A7S4SEJ8_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4SEJ8_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 1.840e-5
Identity = 22/46 (47.83%), Postives = 30/46 (65.22%), Query Frame = 1 
Query:    4 GSLLVPSSFVVPEKEPWPLCCQGMRLGAKVAAVRNQSLYVRADVAR 141
            G LL+P  FVVPE   W     G+RLGA+V A+R+Q  +V+ + AR
Sbjct:  106 GDLLIPQPFVVPENNDWSEEMWGLRLGARVNAIRSQGTFVKTNPAR 151
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BLAST of mRNA_M-pyrifera_M_contig11781.3683.1 vs. uniprot
Match: A0A6U3VLR0_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3VLR0_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 1.840e-5
Identity = 22/46 (47.83%), Postives = 30/46 (65.22%), Query Frame = 1 
Query:    4 GSLLVPSSFVVPEKEPWPLCCQGMRLGAKVAAVRNQSLYVRADVAR 141
            G LL+P  FVVPE   W     G+RLGA+V A+R+Q  +V+ + AR
Sbjct:  409 GDLLIPQPFVVPENNDWSEEMWGLRLGARVNAIRSQGTFVKTNPAR 454
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BLAST of mRNA_M-pyrifera_M_contig11781.3683.1 vs. uniprot
Match: A0A7S3ZEV0_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3ZEV0_9EUKA)

HSP 1 Score: 47.8 bits (112), Expect = 2.660e-5
Identity = 20/35 (57.14%), Postives = 27/35 (77.14%), Query Frame = 1 
Query:    4 GSLLVPSSFVVPEKEPWPLCCQGMRLGAKVAAVRN 108
            G L VP+SFV+P  EPWPL  +G+ LGA+V A+R+
Sbjct:  107 GDLDVPTSFVIPNSEPWPLQTRGLPLGARVMAIRS 141
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11781.3683.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7G5K9_ECTSI4.100e-2085.42HA domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
A0A7S1YI05_9STRA3.120e-755.32Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
B7FW16_PHATC7.990e-754.35Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A7S2Y6T8_9STRA1.280e-547.83Hypothetical protein (Fragment) n=1 Tax=Amphiprora... [more]
A0A7S4SEJ8_9STRA1.840e-547.83Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A6U3VLR0_9STRA1.840e-547.83Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S3ZEV0_9EUKA2.660e-557.14Hypothetical protein (Fragment) n=1 Tax=Lotharella... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig11781contigM-pyrifera_M_contig11781:42..188 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score91.7
Seed ortholog evalue1.1e-16
Seed eggNOG ortholog2880.D7G5K9
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.Helicase associated domain
EggNOG OGs2B9HJ@1,2S0TY@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size147
Cds size147
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815695.959954-CDS-M-pyrifera_M_contig11781:41..1881622815695.959954-CDS-M-pyrifera_M_contig11781:41..188Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11781 42..188 +
1692277526.071738-CDS-M-pyrifera_M_contig11781:41..1881692277526.071738-CDS-M-pyrifera_M_contig11781:41..188Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11781 42..188 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig11781.3683.1prot_M-pyrifera_M_contig11781.3683.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig11781 42..188 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig11781.3683.1

>prot_M-pyrifera_M_contig11781.3683.1 ID=prot_M-pyrifera_M_contig11781.3683.1|Name=mRNA_M-pyrifera_M_contig11781.3683.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=49bp
QGSLLVPSSFVVPEKEPWPLCCQGMRLGAKVAAVRNQSLYVRADVARW*
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mRNA from alignment at M-pyrifera_M_contig11781:42..188+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig11781.3683.1 ID=mRNA_M-pyrifera_M_contig11781.3683.1|Name=mRNA_M-pyrifera_M_contig11781.3683.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=147bp|location=Sequence derived from alignment at M-pyrifera_M_contig11781:42..188+ (Macrocystis pyrifera P11B4 male)
CAGGGGAGCCTGTTGGTGCCCAGCTCCTTCGTGGTGCCAGAGAAAGAACC
GTGGCCTCTGTGCTGCCAGGGCATGAGGCTGGGCGCTAAAGTTGCAGCCG
TGAGAAACCAGAGCCTGTACGTCAGGGCAGACGTTGCGCGCTGGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig11781:42..188+

>mRNA_M-pyrifera_M_contig11781.3683.1 ID=mRNA_M-pyrifera_M_contig11781.3683.1|Name=mRNA_M-pyrifera_M_contig11781.3683.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=294bp|location=Sequence derived from alignment at M-pyrifera_M_contig11781:42..188+ (Macrocystis pyrifera P11B4 male)
CAGGGGAGCCTGTTGGTGCCCAGCTCCTTCGTGGTGCCAGAGAAAGAACC
GTGGCCTCTGTGCTGCCAGGGCATGAGGCTGGGCGCTAAAGTTGCAGCCG
TGAGAAACCAGAGCCTGTACGTCAGGGCAGACGTTGCGCGCTGGTGACAG
GGGAGCCTGTTGGTGCCCAGCTCCTTCGTGGTGCCAGAGAAAGAACCGTG
GCCTCTGTGCTGCCAGGGCATGAGGCTGGGCGCTAAAGTTGCAGCCGTGA
GAAACCAGAGCCTGTACGTCAGGGCAGACGTTGCGCGCTGGTGA
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