mRNA_M-pyrifera_M_contig117801.3679.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig117801.3679.1
Unique NamemRNA_M-pyrifera_M_contig117801.3679.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig117801.3679.1 vs. uniprot
Match: A0A6G0Q5C4_9STRA (AAA domain-containing protein (Fragment) n=3 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0Q5C4_9STRA)

HSP 1 Score: 165 bits (417), Expect = 2.200e-47
Identity = 86/149 (57.72%), Postives = 110/149 (73.83%), Query Frame = 1
Query:    1 LRSLVAGGGAEGSDSGRWAGVVLSSDLQTRVDAITSSARSARRLDMPFRHVLFHGPPGTGKTLVARRIARESGLDYAIMSGGDVGPLGASAVTQIHGLFRWAKSSSRGLLLFVDEAEAFLG---RRSSNQSEHMRQAVNALLFHTGDQA 438
             RSL     A+G D    A VVL + L+TRV  I  S R+A     P+RH+L +GPPGTGKT+VA+R+AR SG+DYAI+SGGDVGPLG+ AVT++H LF+WA SS RG+L+F+DEAEAFLG    R ++ SE MR A+NALL+HTG Q+
Sbjct:   47 FRSLFRRNAAKGQDE--LADVVLRNALETRVFEIARSTRNAMLHGAPYRHLLLYGPPGTGKTMVAKRLARASGMDYAILSGGDVGPLGSDAVTELHALFKWANSSPRGVLIFIDEAEAFLGCRATRKTHMSEAMRNALNALLYHTGTQS 193          
BLAST of mRNA_M-pyrifera_M_contig117801.3679.1 vs. uniprot
Match: A0A0D2IW80_9CHLO (AAA domain-containing protein n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2IW80_9CHLO)

HSP 1 Score: 158 bits (399), Expect = 5.760e-46
Identity = 74/126 (58.73%), Postives = 98/126 (77.78%), Query Frame = 1
Query:   61 VVLSSDLQTRVDAITSSARSARRLDMPFRHVLFHGPPGTGKTLVARRIARESGLDYAIMSGGDVGPLGASAVTQIHGLFRWAKSSSRGLLLFVDEAEAFLGRRSSNQSEHMRQAVNALLFHTGDQA 438
            ++L   L  +V ++ ++A + +R   PFRH+LF+GPPGTGKTLVA+R+AR SGLDYAI+SGGD+ PL   AVTQ+H  F WA+ S +GLLLF+DEA+AFLGRRS   SE +R A+NALL+ TGDQ+
Sbjct:   87 IILPEGLHNQVRSLAATAANTKRHGAPFRHMLFYGPPGTGKTLVAKRLARTSGLDYAILSGGDIAPLEGGAVTQLHSTFDWAEKSRKGLLLFIDEADAFLGRRSDAMSEGLRGALNALLYRTGDQS 212          
BLAST of mRNA_M-pyrifera_M_contig117801.3679.1 vs. uniprot
Match: V9EJ63_PHYPR (AAA domain-containing protein n=6 Tax=Phytophthora TaxID=4783 RepID=V9EJ63_PHYPR)

HSP 1 Score: 167 bits (424), Expect = 7.480e-46
Identity = 87/149 (58.39%), Postives = 113/149 (75.84%), Query Frame = 1
Query:    1 LRSLVAGGGAEGSDSGRWAGVVLSSDLQTRVDAITSSARSARRLDMPFRHVLFHGPPGTGKTLVARRIARESGLDYAIMSGGDVGPLGASAVTQIHGLFRWAKSSSRGLLLFVDEAEAFLG---RRSSNQSEHMRQAVNALLFHTGDQA 438
            LR+L++   A+G D    A VVL S L+TRV  I  S R+A     P+RH+L +GPPGTGKT+VA+R+AR SG+DYAI+SGGDVGPLG+ AVT++H LF+WA SS RG+L+F+DEAEAFLG    R ++ SE MR A+NALL+HTG Q+
Sbjct:  411 LRALISQKPAKGQDE--LADVVLRSSLETRVLEIARSTRNAMLHGAPYRHLLLYGPPGTGKTMVAKRLARASGMDYAILSGGDVGPLGSDAVTELHALFKWANSSPRGVLIFIDEAEAFLGCRATRKTHMSEAMRNALNALLYHTGTQS 557          
BLAST of mRNA_M-pyrifera_M_contig117801.3679.1 vs. uniprot
Match: A0A8K1FJC0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FJC0_PYTOL)

HSP 1 Score: 166 bits (420), Expect = 2.700e-45
Identity = 87/149 (58.39%), Postives = 110/149 (73.83%), Query Frame = 1
Query:    1 LRSLVAGGGAEGSDSGRWAGVVLSSDLQTRVDAITSSARSARRLDMPFRHVLFHGPPGTGKTLVARRIARESGLDYAIMSGGDVGPLGASAVTQIHGLFRWAKSSSRGLLLFVDEAEAFLG---RRSSNQSEHMRQAVNALLFHTGDQA 438
            LR++     A+G D    A VVL   L+TRV  I  S R+A     P+RH+L +GPPGTGKT+VA+R+AR SG+DYAI+SGGDVGPLG+ AVT++H LF WAKSS RG+L+F+DEAEAFLG    R ++ SE MR A+NALLFHTG Q+
Sbjct:  407 LRAIFLPKRAKGQDE--LADVVLRETLETRVHEIAKSVRNAILHSAPYRHLLLYGPPGTGKTMVAKRLARASGMDYAILSGGDVGPLGSDAVTELHALFHWAKSSPRGVLIFIDEAEAFLGCRATRKTHMSEAMRNALNALLFHTGTQS 553          
BLAST of mRNA_M-pyrifera_M_contig117801.3679.1 vs. uniprot
Match: F0Y2W0_AURAN (AAA domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y2W0_AURAN)

HSP 1 Score: 164 bits (415), Expect = 3.330e-45
Identity = 83/143 (58.04%), Postives = 106/143 (74.13%), Query Frame = 1
Query:    4 RSLVAGGGAEGSDSGRWAGVVLSSDLQTRVDAITSSARSARRLDMPFRHVLFHGPPGTGKTLVARRIARESGLDYAIMSGGDVGPLGASAVTQIHGLFRWAKSSSRGLLLFVDEAEAFLGRRS-SNQSEHMRQAVNALLFHTG 429
            R+  A   A  ++ G   GVVL  DL+TRV  +  + R+A+R   PFRH+L HGPPGTGKTLVA+R+A+ SGL+YA+MSGGDVGPLGA  VT +H LFRWA++S  G+L+F+DEAEAFL  RS S  +EHMR A+NA L+ TG
Sbjct:  250 RAAAARARARAAEDGWLDGVVLPGDLRTRVLQLAVATRNAKRNRAPFRHMLLHGPPGTGKTLVAKRLAKASGLEYALMSGGDVGPLGADGVTALHTLFRWARTSDTGVLIFIDEAEAFLASRSRSKLTEHMRNALNAFLYQTG 392          
BLAST of mRNA_M-pyrifera_M_contig117801.3679.1 vs. uniprot
Match: A0A7S1SQA1_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1SQA1_9CHLO)

HSP 1 Score: 155 bits (391), Expect = 6.040e-45
Identity = 73/129 (56.59%), Postives = 99/129 (76.74%), Query Frame = 1
Query:   52 WAGVVLSSDLQTRVDAITSSARSARRLDMPFRHVLFHGPPGTGKTLVARRIARESGLDYAIMSGGDVGPLGASAVTQIHGLFRWAKSSSRGLLLFVDEAEAFLGRRSSNQSEHMRQAVNALLFHTGDQA 438
            +A VVL + LQ  +  + +S  + ++   PFRH+LF+GPPGTGK+L A+R+AR SGL YAI+SGGDV PLG  AVTQ+H +F WA+++  GLLLF+DEA+AFLGRR  N SE +R A+NA+L+ TGDQ+
Sbjct:   64 FADVVLPTKLQDHIAHLAASTTNTKKHGAPFRHMLFYGPPGTGKSLAAKRLARTSGLHYAILSGGDVAPLGGGAVTQLHEIFDWAEATPSGLLLFIDEADAFLGRRGENMSEGLRGALNAMLYRTGDQS 192          
BLAST of mRNA_M-pyrifera_M_contig117801.3679.1 vs. uniprot
Match: A0A329SI18_9STRA (AAA domain-containing protein n=10 Tax=Phytophthora TaxID=4783 RepID=A0A329SI18_9STRA)

HSP 1 Score: 165 bits (417), Expect = 7.470e-45
Identity = 86/149 (57.72%), Postives = 112/149 (75.17%), Query Frame = 1
Query:    1 LRSLVAGGGAEGSDSGRWAGVVLSSDLQTRVDAITSSARSARRLDMPFRHVLFHGPPGTGKTLVARRIARESGLDYAIMSGGDVGPLGASAVTQIHGLFRWAKSSSRGLLLFVDEAEAFLG---RRSSNQSEHMRQAVNALLFHTGDQA 438
            LR+L+    A+G D    A VVL S L+TRV  I  S R+A     P+RH+L +GPPGTGKT+VA+R+AR SG+DYAI+SGGDVGPLG+ AVT++H LF+WA +S RG+L+F+DEAEAFLG    R ++ SE MR A+NALL+HTG Q+
Sbjct:  412 LRALIRRKPAKGQDE--LADVVLRSSLETRVLEIARSTRNAVLHGAPYRHLLLYGPPGTGKTMVAKRLARASGMDYAILSGGDVGPLGSDAVTELHALFKWANASPRGVLIFIDEAEAFLGCRATRKTHMSEAMRNALNALLYHTGTQS 558          
BLAST of mRNA_M-pyrifera_M_contig117801.3679.1 vs. uniprot
Match: A0A438EVV7_VITVI (ATPase family AAA domain-containing protein 3 n=2 Tax=Vitis vinifera TaxID=29760 RepID=A0A438EVV7_VITVI)

HSP 1 Score: 159 bits (401), Expect = 1.330e-44
Identity = 79/145 (54.48%), Postives = 106/145 (73.10%), Query Frame = 1
Query:    7 SLVAGGGAEGSDSGRWAGVVLSSDLQTRVDAITSSARSARRLDMPFRHVLFHGPPGTGKTLVARRIARESGLDYAIMSGGDVGPLGASAVTQIHGLFRWAKSSSRGLLLFVDEAEAFLGRRSSNQ-SEHMRQAVNALLFHTGDQA 438
            S  AGG   G +   +  ++L   LQ R++ +  +  + +    PFR++LF+GPPGTGKT+VAR IAR+SGLDYA+M+GGDV PLGA AVT+IH +F WAK S++GLLLF+DEA+AFL  R+S + SE  R A+NALLF TGDQ+
Sbjct:   88 STAAGGARPGENKTSFGNIILHPSLQRRIEHLARATSNTKSHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGAQAVTKIHQIFDWAKKSNKGLLLFIDEADAFLCERNSTRMSEAQRSALNALLFRTGDQS 232          
BLAST of mRNA_M-pyrifera_M_contig117801.3679.1 vs. uniprot
Match: A0A250WYZ9_9CHLO (AAA domain-containing protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250WYZ9_9CHLO)

HSP 1 Score: 162 bits (411), Expect = 2.260e-44
Identity = 76/126 (60.32%), Postives = 98/126 (77.78%), Query Frame = 1
Query:   61 VVLSSDLQTRVDAITSSARSARRLDMPFRHVLFHGPPGTGKTLVARRIARESGLDYAIMSGGDVGPLGASAVTQIHGLFRWAKSSSRGLLLFVDEAEAFLGRRSSNQSEHMRQAVNALLFHTGDQA 438
            ++L  DL + V  + S+A + R+   PFRH+LF+GPPGTGKT+ A+R+AR SG+DYAIMSGGDV PL   AVTQ+H LF W++ S +GLLLF+DEA+AFLGRR  N SE +R A+NALLF TGDQ+
Sbjct:  323 IILPEDLHSNVRLLASAASNTRKHGAPFRHMLFYGPPGTGKTMAAKRLARTSGMDYAIMSGGDVAPLAGKAVTQLHELFDWSERSRKGLLLFIDEADAFLGRRGDNMSEGLRGALNALLFRTGDQS 448          
BLAST of mRNA_M-pyrifera_M_contig117801.3679.1 vs. uniprot
Match: A0A225WZW4_9STRA (AAA domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WZW4_9STRA)

HSP 1 Score: 163 bits (413), Expect = 2.280e-44
Identity = 81/131 (61.83%), Postives = 103/131 (78.63%), Query Frame = 1
Query:   55 AGVVLSSDLQTRVDAITSSARSARRLDMPFRHVLFHGPPGTGKTLVARRIARESGLDYAIMSGGDVGPLGASAVTQIHGLFRWAKSSSRGLLLFVDEAEAFLG---RRSSNQSEHMRQAVNALLFHTGDQA 438
            A VVL S L+TR+  I  S R+A     P+RH+L +GPPGTGKT+VA+R+AR SG+DYAI+SGGDVGPLG+ AVT++H LF+WA SS RG+L+F+DEAEAFLG    R ++ SE MR A+NALLFHTG Q+
Sbjct:  405 ADVVLRSTLETRILEIARSTRNAMLHGAPYRHLLLYGPPGTGKTMVAKRLARASGMDYAILSGGDVGPLGSDAVTELHALFKWANSSPRGVLIFIDEAEAFLGCRATRKTHMSEAMRNALNALLFHTGTQS 535          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig117801.3679.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6G0Q5C4_9STRA2.200e-4757.72AAA domain-containing protein (Fragment) n=3 Tax=P... [more]
A0A0D2IW80_9CHLO5.760e-4658.73AAA domain-containing protein n=1 Tax=Monoraphidiu... [more]
V9EJ63_PHYPR7.480e-4658.39AAA domain-containing protein n=6 Tax=Phytophthora... [more]
A0A8K1FJC0_PYTOL2.700e-4558.39Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
F0Y2W0_AURAN3.330e-4558.04AAA domain-containing protein (Fragment) n=1 Tax=A... [more]
A0A7S1SQA1_9CHLO6.040e-4556.59Hypothetical protein (Fragment) n=1 Tax=Tetraselmi... [more]
A0A329SI18_9STRA7.470e-4557.72AAA domain-containing protein n=10 Tax=Phytophthor... [more]
A0A438EVV7_VITVI1.330e-4454.48ATPase family AAA domain-containing protein 3 n=2 ... [more]
A0A250WYZ9_9CHLO2.260e-4460.32AAA domain-containing protein n=1 Tax=Chlamydomona... [more]
A0A225WZW4_9STRA2.280e-4461.83AAA domain-containing protein n=1 Tax=Phytophthora... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig117801contigM-pyrifera_M_contig117801:5..521 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score170.2
Seed ortholog evalue6.9e-40
Seed eggNOG ortholog4792.ETI38986
KEGG koko:K17681
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Domain of unknown function (DUF3523)
EggNOG OGs3QCKH@4776,COG1223@1,KOG0742@2759
COG Functional cat.O
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03029
Exons2
Model size438
Cds size438
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815695.7871556-CDS-M-pyrifera_M_contig117801:4..711622815695.7871556-CDS-M-pyrifera_M_contig117801:4..71Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117801 5..71 -
1692277525.9719079-CDS-M-pyrifera_M_contig117801:4..711692277525.9719079-CDS-M-pyrifera_M_contig117801:4..71Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117801 5..71 -
1622815695.7990744-CDS-M-pyrifera_M_contig117801:150..5211622815695.7990744-CDS-M-pyrifera_M_contig117801:150..521Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117801 151..521 -
1692277525.987078-CDS-M-pyrifera_M_contig117801:150..5211692277525.987078-CDS-M-pyrifera_M_contig117801:150..521Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117801 151..521 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig117801.3679.1prot_M-pyrifera_M_contig117801.3679.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig117801 5..521 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig117801.3679.1

>prot_M-pyrifera_M_contig117801.3679.1 ID=prot_M-pyrifera_M_contig117801.3679.1|Name=mRNA_M-pyrifera_M_contig117801.3679.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=146bp
LRSLVAGGGAEGSDSGRWAGVVLSSDLQTRVDAITSSARSARRLDMPFRH
VLFHGPPGTGKTLVARRIARESGLDYAIMSGGDVGPLGASAVTQIHGLFR
WAKSSSRGLLLFVDEAEAFLGRRSSNQSEHMRQAVNALLFHTGDQA
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mRNA from alignment at M-pyrifera_M_contig117801:5..521-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig117801.3679.1 ID=mRNA_M-pyrifera_M_contig117801.3679.1|Name=mRNA_M-pyrifera_M_contig117801.3679.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=517bp|location=Sequence derived from alignment at M-pyrifera_M_contig117801:5..521- (Macrocystis pyrifera P11B4 male)
CTGCGCTCGCTCGTGGCGGGGGGCGGGGCGGAAGGGTCCGACAGCGGTCG ATGGGCGGGCGTGGTGCTGTCGAGCGATCTGCAGACTCGGGTGGATGCGA TCACGTCATCTGCTCGCAGTGCGCGTCGTCTGGACATGCCGTTTCGGCAC GTGCTGTTCCACGGTCCGCCGGGCACGGGCAAGACGCTGGTGGCTCGTCG CATCGCGCGGGAGAGTGGGCTGGACTACGCGATCATGAGCGGGGGTGACG TGGGGCCTCTGGGCGCGTCGGCGGTAACTCAGATCCACGGCCTGTTTCGG TGGGCCAAGTCGTCGTCCAGGGGACTGCTGCTATTTGTGGACGAGGCGGA GGCGTTTCTTGGGAGGCGGAGGTGTGTGTGTGTGCACTGCCGTGAGCGTG TTGTTGCAAGCTAACTTACCTAATCTCCCTCTCTCTCTCGTCTGTGCCAG CTCCAATCAGAGCGAACACATGCGCCAAGCGGTGAATGCTCTGCTGTTTC ACACGGGCGACCAAGCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig117801:5..521-

>mRNA_M-pyrifera_M_contig117801.3679.1 ID=mRNA_M-pyrifera_M_contig117801.3679.1|Name=mRNA_M-pyrifera_M_contig117801.3679.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=876bp|location=Sequence derived from alignment at M-pyrifera_M_contig117801:5..521- (Macrocystis pyrifera P11B4 male)
CTGCGCTCGCTCGTGGCGGGGGGCGGGGCGGAAGGGTCCGACAGCGGTCG
ATGGGCGGGCGTGGTGCTGTCGAGCGATCTGCAGACTCGGGTGGATGCGA
TCACGTCATCTGCTCGCAGTGCGCGTCGTCTGGACATGCCGTTTCGGCAC
GTGCTGTTCCACGGTCCGCCGGGCACGGGCAAGACGCTGGTGGCTCGTCG
CATCGCGCGGGAGAGTGGGCTGGACTACGCGATCATGAGCGGGGGTGACG
TGGGGCCTCTGGGCGCGTCGGCGGTAACTCAGATCCACGGCCTGTTTCGG
TGGGCCAAGTCGTCGTCCAGGGGACTGCTGCTATTTGTGGACGAGGCGGA
GGCGTTTCTTGGGAGGCGGAGCTGCGCTCGCTCGTGGCGGGGGGCGGGGC
GGAAGGGTCCGACAGCGGTCGATGGGCGGGCGTGGTGCTGTCGAGCGATC
TGCAGACTCGGGTGGATGCGATCACGTCATCTGCTCGCAGTGCGCGTCGT
CTGGACATGCCGTTTCGGCACGTGCTGTTCCACGGTCCGCCGGGCACGGG
CAAGACGCTGGTGGCTCGTCGCATCGCGCGGGAGAGTGGGCTGGACTACG
CGATCATGAGCGGGGGTGACGTGGGGCCTCTGGGCGCGTCGGCGGTAACT
CAGATCCACGGCCTGTTTCGGTGGGCCAAGTCGTCGTCCAGGGGACTGCT
GCTATTTGTGGACGAGGCGGAGGCGTTTCTTGGGAGGCGGAGCTCCAATC
AGAGCGAACACATGCGCCAAGCGGTGAATGCTCTGCTGTTTCACACGGGC
GACCAAGCCCTCCAATCAGAGCGAACACATGCGCCAAGCGGTGAATGCTC
TGCTGTTTCACACGGGCGACCAAGCC
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