mRNA_M-pyrifera_M_contig1178.3676.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig1178.3676.1
Unique NamemRNA_M-pyrifera_M_contig1178.3676.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig1178.3676.1 vs. uniprot
Match: D7FVQ4_ECTSI (Kinesin motor domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVQ4_ECTSI)

HSP 1 Score: 172 bits (435), Expect = 1.570e-47
Identity = 87/106 (82.08%), Postives = 96/106 (90.57%), Query Frame = 1 
Query:    4 RYSQLEAASSQSRLRYDRIQEENEGNKRLVNAAQDEAEEWKNRFEAERALRRALNAKVLDMQGSIRVLCRLRPLQEAEITAIDRDKEYEDPMANITYPDVDRLTFW 321
            RYSQLEAAS QSR  YDR++EENEGNKRL +AAQ+EA+EWK +FEAER LRR LNAK+LDMQGSIRVLCRLRPLQEAE+  I+R KEYEDPMANITYPDVDRLTFW
Sbjct:  748 RYSQLEAASIQSRQGYDRVKEENEGNKRLASAAQEEAQEWKTKFEAERVLRRELNAKILDMQGSIRVLCRLRPLQEAEVLVIERGKEYEDPMANITYPDVDRLTFW 853
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BLAST of mRNA_M-pyrifera_M_contig1178.3676.1 vs. uniprot
Match: A0A835Z6H9_9STRA (Kinesin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6H9_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 4.730e-12
Identity = 35/77 (45.45%), Postives = 52/77 (67.53%), Query Frame = 1 
Query:  100 AQDEAEEWKNRFEAERALRRALNAKVLDMQGSIRVLCRLRPLQEAEITAIDRDKEYE---DPMANITYPDVDRLTFW 321
            A+ +A+ W++R+E ERA R  L  +VL++QGSIRVLCR+RP+  +E+  ++R  E     DP   + YPD D+L FW
Sbjct:  443 ARRDADAWRSRWEGERAARADLQERVLELQGSIRVLCRVRPMVPSELEEMERRPELAAMGDPQVEVQYPDDDKLVFW 519
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig1178.3676.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FVQ4_ECTSI1.570e-4782.08Kinesin motor domain-containing protein n=1 Tax=Ec... [more]
A0A835Z6H9_9STRA4.730e-1245.45Kinesin-like protein n=1 Tax=Tribonema minus TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig1178contigM-pyrifera_M_contig1178:13541..15864 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score175.3
Seed ortholog evalue1.6e-41
Seed eggNOG ortholog2880.D7FVQ4
KEGG koko:K10406
Hectar predicted targeting categoryother localisation
EggNOG free text desc.microtubule motor activity
EggNOG OGsCOG5059@1,KOG0239@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Exons4
Model size321
Cds size321
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig1178.3676.1prot_M-pyrifera_M_contig1178.3676.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig1178 13541..15864 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815695.5795934-CDS-M-pyrifera_M_contig1178:13540..136241622815695.5795934-CDS-M-pyrifera_M_contig1178:13540..13624Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1178 13541..13624 -
1692277525.8388011-CDS-M-pyrifera_M_contig1178:13540..136241692277525.8388011-CDS-M-pyrifera_M_contig1178:13540..13624Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1178 13541..13624 -
1622815695.590505-CDS-M-pyrifera_M_contig1178:14798..148461622815695.590505-CDS-M-pyrifera_M_contig1178:14798..14846Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1178 14799..14846 -
1692277525.8501003-CDS-M-pyrifera_M_contig1178:14798..148461692277525.8501003-CDS-M-pyrifera_M_contig1178:14798..14846Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1178 14799..14846 -
1622815695.6053376-CDS-M-pyrifera_M_contig1178:15271..153971622815695.6053376-CDS-M-pyrifera_M_contig1178:15271..15397Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1178 15272..15397 -
1692277525.8600748-CDS-M-pyrifera_M_contig1178:15271..153971692277525.8600748-CDS-M-pyrifera_M_contig1178:15271..15397Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1178 15272..15397 -
1622815695.6190302-CDS-M-pyrifera_M_contig1178:15801..158641622815695.6190302-CDS-M-pyrifera_M_contig1178:15801..15864Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1178 15802..15864 -
1692277525.8712728-CDS-M-pyrifera_M_contig1178:15801..158641692277525.8712728-CDS-M-pyrifera_M_contig1178:15801..15864Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1178 15802..15864 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig1178.3676.1

>prot_M-pyrifera_M_contig1178.3676.1 ID=prot_M-pyrifera_M_contig1178.3676.1|Name=mRNA_M-pyrifera_M_contig1178.3676.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=107bp
ARYSQLEAASSQSRLRYDRIQEENEGNKRLVNAAQDEAEEWKNRFEAERA
LRRALNAKVLDMQGSIRVLCRLRPLQEAEITAIDRDKEYEDPMANITYPD
VDRLTFW
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mRNA from alignment at M-pyrifera_M_contig1178:13541..15864-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig1178.3676.1 ID=mRNA_M-pyrifera_M_contig1178.3676.1|Name=mRNA_M-pyrifera_M_contig1178.3676.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=2324bp|location=Sequence derived from alignment at M-pyrifera_M_contig1178:13541..15864- (Macrocystis pyrifera P11B4 male)
GCACGATACTCGCAGCTCGAAGCTGCCTCGAGCCAGTCAAGACTCCGTTA
CGATCGCATCCAGGTGATACGCCTGCTATGCACGTTTCTGGTTGTATCAA
CCGGTGTGTGAGTGAAATGCTCAACGTAATACACGGGATATTGAGTGACA
GACCCCACACGCAATGTAATAGGGGGACTGTTTAGGGCGCTGCCTTTGAG
GCTTTGCGCTGGATATGCCTCGCACTGAGTAACATGTGATGGTATGAGAC
CGTGGATACCCATCGGTGCCGTTTTCCTCACATTGACCTGGCTTGCATAC
ACTTACATCGTGTGTGCAGTGAGACTTTTTTATGCTCTGCCACTGGATCA
CCGCGAGACAGTACATGCACGACCAGCAGCGAGAGTTACAGTAGTAGCAT
TAATGGTGTTTCGAGACCTCTCTGGATGCGGAAATTTCACTTTTTGTTTG
TACTTTGCCGTGTCCAGGAGGAAAACGAAGGCAACAAGCGTCTGGTTAAC
GCTGCTCAAGACGAAGCGGAAGAATGGAAAAATAGGTTCGAAGCTGAGAG
GGCTTTGAGGCGAGCATTGAACGCCAAGGTGTTGGACATGCAGGTACGCC
TATACGAAAGCTTTGTCAGGTAGCATCATGCTGCATCCTCTGTGCTTTGG
GTTGTTGTTTTTGGTTTCTGTTCGGTTGTTCTCGAAAACACTAAAACATT
CCAGGTTTGACACCCACTTTCCAGTCCCGCGTGTCCCCCACGAAATGCTG
GAACAGTGTCCGGTAAGGGAAGTGTTCTCATTTCGTACTAATAGTTTTAG
AGCTCAGCGCCGGGAGTCTTCGTGAATCGCCAACATCGCATGCTGCACGC
CATGGCGAGTTGGACATTGAGTGGGTGCGTACACGAGTCGTATTGTCTTG
GTGCAGTGTTGTCCATATGTTCACGTCGGCATCATGCGATCCGAGGATGT
CGTTTGTTGAGCTACGATATCCTAAGGCATGCGCTCTTTCCCACCCGTTT
CGTCGCGAACGATTACAGGGGAGCATACGAGTTTTGTGTCGGTTGCGGCC
GTTACAAGAGGCGGAGGTGAGCAGTAGTACTTGGAAAGCTATGTAGTTCG
GGACTCAAGGAAACGTTGCATATCCCCTAACTATGGGAGAAGACATGTGT
TATGATAGTCGTTTGGGCCATCTGCCATCTGTGGGTGCGGACATTCACGT
GGGAATAATTGTTTTTTGGGAATAGCACTCGTATATCACTCAGAACGGAG
CCAGAATTAGGAGATGTACTCAGGTGATGCCTAGTCGTGGTCGTGTGACC
AATTACCCTCGCGTCCCTGATAGGCTTTCCATCGATGCTACATTTGCAAT
CTTCATAAATACGCAGGGAAACCTCTATCCTCCCCTTTTGGGCCTTTATA
TTAGGGACCACTGGATAGTCCTTTGGACCATCTGCCATCTGTGGGTGCGA
ACATTCACGTGGAAATTGCTTTGTTTGGCATAGCGCTCGTATAAAAGTCA
GAACGGAGCCAGAAATAGGGGGTGTAGTCATGTCATGTATGGCCGTACAG
TGGTCGTGTGACCATAGACCCTCGCGTCCCTCAAATGCCGGGACGGAGCA
CGTCCGGTTTTCACCGACCAGACAGACGTTGATTTCACCAAGCGCGAAGC
GCCGTGAGGCGTTCGGCGAGTCGCATGAAGGGTGAGTTGCATCCTACTAA
GAACCGCTTGTGAGACGGACTTTCTTGAATATTAATAACAGCGTCGAATC
AGTAGTTATTTTTCTGGTTTGGCCACTTCCAGAGACAGCAATGGGTCTAT
TATATAACTACCTCGTGGGTGCCTTACCATATACCAGGTACACACTACGT
TGATACGAAAGTTCCCCTTATGCGAGCCAGAAGTAGGGAGTTTGTTTGTG
TAAATACTGTGGTCCGCACGACCCTTGTCGCGTAGCACAATCCTGCCTTA
AGTGGATCACACACTGCATGCACTGAGAGTGCGTTTAGCGTACGTAAGCT
GTTTGTCACCATCACGATCAGCTCATTTTGGCGACTTGCATTCAAACTTC
TCACCGTTCTGTCATCGATACCGCAGACAGCAGACAGCATCCACGAAGGG
CCATTTTTCTTTCAACATGGTTGCCTGTAAACGGCCTTTTTCCTACCGCG
GTCTCGCTCAACCTACTAGACCATACCCAATCATCGATCCAGGCTTCCAT
CGCTGTTGATGTTTTACACGTGACTCCCTTGGCTGTGAAGATTACTGCGA
TCGACAGAGATAAGGAGTACGAGGATCCCATGGCCAACATAACTTATCCC
GATGTGGATAGGCTGACATTCTGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig1178:13541..15864-

>mRNA_M-pyrifera_M_contig1178.3676.1 ID=mRNA_M-pyrifera_M_contig1178.3676.1|Name=mRNA_M-pyrifera_M_contig1178.3676.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=642bp|location=Sequence derived from alignment at M-pyrifera_M_contig1178:13541..15864- (Macrocystis pyrifera P11B4 male)
GCACGATACTCGCAGCTCGAAGCTGCCTCGAGCCAGTCAAGACTCCGTTA
CGATCGCATCCAGGCACGATACTCGCAGCTCGAAGCTGCCTCGAGCCAGT
CAAGACTCCGTTACGATCGCATCCAGGAGGAAAACGAAGGCAACAAGCGT
CTGGTTAACGCTGCTCAAGACGAAGCGGAAGAATGGAAAAATAGGTTCGA
AGCTGAGAGGGCTTTGAGGCGAGCATTGAACGCCAAGGTGTTGGACATGC
AGGAGGAAAACGAAGGCAACAAGCGTCTGGTTAACGCTGCTCAAGACGAA
GCGGAAGAATGGAAAAATAGGTTCGAAGCTGAGAGGGCTTTGAGGCGAGC
ATTGAACGCCAAGGTGTTGGACATGCAGGGGAGCATACGAGTTTTGTGTC
GGTTGCGGCCGTTACAAGAGGCGGAGGGGAGCATACGAGTTTTGTGTCGG
TTGCGGCCGTTACAAGAGGCGGAGATTACTGCGATCGACAGAGATAAGGA
GTACGAGGATCCCATGGCCAACATAACTTATCCCGATGTGGATAGGCTGA
CATTCTGGATTACTGCGATCGACAGAGATAAGGAGTACGAGGATCCCATG
GCCAACATAACTTATCCCGATGTGGATAGGCTGACATTCTGG
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