mRNA_M-pyrifera_M_contig117798.3674.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig117798.3674.1
Unique NamemRNA_M-pyrifera_M_contig117798.3674.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig117798.3674.1 vs. uniprot
Match: A0A383VRV5_TETOB (Transmembrane protein 231 n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VRV5_TETOB)

HSP 1 Score: 63.2 bits (152), Expect = 1.850e-10
Identity = 26/48 (54.17%), Postives = 32/48 (66.67%), Query Frame = 1 
Query:    1 SYRPDVGEVLKWAWVQVFAVAWIVWFLLSWLRRLVFVHRIVDTFTVQD 144
            SYRP   E+LKW WVQ     W VW+LL WL RLVF HR+++T  + D
Sbjct:  258 SYRPSTSEMLKWGWVQFACALWPVWWLLRWLERLVFGHRVLETRVIAD 305
[Close]
BLAST of mRNA_M-pyrifera_M_contig117798.3674.1 vs. uniprot
Match: A0A0S4J387_BODSA (Transmembrane protein 231 n=1 Tax=Bodo saltans TaxID=75058 RepID=A0A0S4J387_BODSA)

HSP 1 Score: 53.1 bits (126), Expect = 7.490e-7
Identity = 21/48 (43.75%), Postives = 32/48 (66.67%), Query Frame = 1 
Query:    1 SYRPDVGEVLKWAWVQVFAVAWIVWFLLSWLRRLVFVHRIVDTFTVQD 144
            SYRP  GE+LKWAWVQ F VA+++++ + W R L     +++T  V +
Sbjct:  290 SYRPGYGEILKWAWVQYFTVAYVIYWFVQWARWLFVKQALINTIAVWE 337
[Close]
BLAST of mRNA_M-pyrifera_M_contig117798.3674.1 vs. uniprot
Match: W6KFF3_9TRYP (Transmembrane protein 231 n=1 Tax=Phytomonas sp. isolate EM1 TaxID=134006 RepID=W6KFF3_9TRYP)

HSP 1 Score: 47.8 bits (112), Expect = 6.070e-5
Identity = 21/42 (50.00%), Postives = 30/42 (71.43%), Query Frame = 1 
Query:    4 YRPDVGEVLKWAWVQVFAVAWIVWFLLSWLRRLVFVHRIVDT 129
            YRP   E LK AWVQ FA+A+++ ++L W+R  V V+ +VDT
Sbjct:  274 YRPSFAEALKSAWVQYFAIAYVIQWVLWWVRGFVVVNGVVDT 315
[Close]
BLAST of mRNA_M-pyrifera_M_contig117798.3674.1 vs. uniprot
Match: A0A7S3QT75_DUNTE (Transmembrane protein 231 n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3QT75_DUNTE)

HSP 1 Score: 47.4 bits (111), Expect = 7.500e-5
Identity = 22/48 (45.83%), Postives = 29/48 (60.42%), Query Frame = 1 
Query:    1 SYRPDVGEVLKWAWVQVFAVAWIVWFLLSWLRRLVFVHRIVDTFTVQD 144
            + RP V E+LK+AW+Q  A    +WF   WL+  VF +RI DT  V D
Sbjct:  190 TVRPQVIEMLKFAWIQFLATFVAIWFFFHWLQIFVFRYRIFDTRAVSD 237
[Close]
BLAST of mRNA_M-pyrifera_M_contig117798.3674.1 vs. uniprot
Match: A0A7S3QTU9_DUNTE (Transmembrane protein 231 n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3QTU9_DUNTE)

HSP 1 Score: 47.4 bits (111), Expect = 8.280e-5
Identity = 22/48 (45.83%), Postives = 29/48 (60.42%), Query Frame = 1 
Query:    1 SYRPDVGEVLKWAWVQVFAVAWIVWFLLSWLRRLVFVHRIVDTFTVQD 144
            + RP V E+LK+AW+Q  A    +WF   WL+  VF +RI DT  V D
Sbjct:  258 TVRPQVIEMLKFAWIQFLATFVAIWFFFHWLQIFVFRYRIFDTRAVSD 305
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig117798.3674.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A383VRV5_TETOB1.850e-1054.17Transmembrane protein 231 n=1 Tax=Tetradesmus obli... [more]
A0A0S4J387_BODSA7.490e-743.75Transmembrane protein 231 n=1 Tax=Bodo saltans Tax... [more]
W6KFF3_9TRYP6.070e-550.00Transmembrane protein 231 n=1 Tax=Phytomonas sp. i... [more]
A0A7S3QT75_DUNTE7.500e-545.83Transmembrane protein 231 n=1 Tax=Dunaliella terti... [more]
A0A7S3QTU9_DUNTE8.280e-545.83Transmembrane protein 231 n=1 Tax=Dunaliella terti... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig117798contigM-pyrifera_M_contig117798:246..446 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons2
Model size144
Cds size144
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815695.418565-CDS-M-pyrifera_M_contig117798:245..3111622815695.418565-CDS-M-pyrifera_M_contig117798:245..311Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117798 246..311 +
1692277525.7219827-CDS-M-pyrifera_M_contig117798:245..3111692277525.7219827-CDS-M-pyrifera_M_contig117798:245..311Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117798 246..311 +
1622815695.4295347-CDS-M-pyrifera_M_contig117798:368..4461622815695.4295347-CDS-M-pyrifera_M_contig117798:368..446Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117798 369..446 +
1692277525.7316992-CDS-M-pyrifera_M_contig117798:368..4461692277525.7316992-CDS-M-pyrifera_M_contig117798:368..446Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117798 369..446 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig117798.3674.1prot_M-pyrifera_M_contig117798.3674.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig117798 246..446 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig117798.3674.1

>prot_M-pyrifera_M_contig117798.3674.1 ID=prot_M-pyrifera_M_contig117798.3674.1|Name=mRNA_M-pyrifera_M_contig117798.3674.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=48bp
SYRPDVGEVLKWAWVQVFAVAWIVWFLLSWLRRLVFVHRIVDTFTVQD
back to top

mRNA from alignment at M-pyrifera_M_contig117798:246..446+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig117798.3674.1 ID=mRNA_M-pyrifera_M_contig117798.3674.1|Name=mRNA_M-pyrifera_M_contig117798.3674.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=201bp|location=Sequence derived from alignment at M-pyrifera_M_contig117798:246..446+ (Macrocystis pyrifera P11B4 male)
AGCTACCGGCCTGATGTCGGAGAAGTGCTGAAGTGGGCGTGGGTGCAAGT
GTTTGCTGTTGCCTGGGTGCGTGTGTGCAACGTGTGCTGGCTGGGTGTAG
CACTCACGTTTGCGTTTCTACAGATTGTTTGGTTCTTGCTCTCGTGGCTG
CGCAGGCTGGTGTTTGTGCACCGGATTGTGGACACGTTCACCGTTCAAGA
C
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig117798:246..446+

>mRNA_M-pyrifera_M_contig117798.3674.1 ID=mRNA_M-pyrifera_M_contig117798.3674.1|Name=mRNA_M-pyrifera_M_contig117798.3674.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=288bp|location=Sequence derived from alignment at M-pyrifera_M_contig117798:246..446+ (Macrocystis pyrifera P11B4 male)
AGCTACCGGCCTGATGTCGGAGAAGTGCTGAAGTGGGCGTGGGTGCAAGT
GTTTGCTGTTGCCTGGAGCTACCGGCCTGATGTCGGAGAAGTGCTGAAGT
GGGCGTGGGTGCAAGTGTTTGCTGTTGCCTGGATTGTTTGGTTCTTGCTC
TCGTGGCTGCGCAGGCTGGTGTTTGTGCACCGGATTGTGGACACGTTCAC
CGTTCAAGACATTGTTTGGTTCTTGCTCTCGTGGCTGCGCAGGCTGGTGT
TTGTGCACCGGATTGTGGACACGTTCACCGTTCAAGAC
back to top