mRNA_M-pyrifera_M_contig117758.3662.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig117758.3662.1
Unique NamemRNA_M-pyrifera_M_contig117758.3662.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig117758.3662.1 vs. uniprot
Match: A0A7S4MKX5_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4MKX5_9EUKA)

HSP 1 Score: 160 bits (404), Expect = 3.840e-44
Identity = 75/138 (54.35%), Postives = 106/138 (76.81%), Query Frame = 1
Query:    1 YLPMAVLGYWAYGDSALSPIYRNICTDGD--DCTYWQLLGIWLAVLALTVHVILAYAVILHPTERLLEQLLGVDKLRQPKGKIASVCLRTAIMAATVIVACLVPDFTDFMNLVSSLSSTFTSFVFPCFFHAVIFWKDV 408
            Y+PMAV+GY+A+GD  LSPIY N+CTDG    CTY + LG WLA+ A+T+HV+L++A++++PTE  LE+L+G+ K   PK K+  V LRT ++  TV++A ++PDF DF+NLVSS ++T TSFVFPC FH V+FW  +
Sbjct:  333 YIPMAVVGYYAFGDETLSPIYDNLCTDGSGSSCTYGEQLGKWLAIFAVTLHVMLSFAIVINPTELALERLVGIKKWENPKRKLIGVSLRTCLVVLTVLIAEVIPDFGDFLNLVSSCTNTATSFVFPCLFHLVLFWPTL 470          
BLAST of mRNA_M-pyrifera_M_contig117758.3662.1 vs. uniprot
Match: A0A2P6NW86_9EUKA (Aa_trans domain-containing protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NW86_9EUKA)

HSP 1 Score: 74.7 bits (182), Expect = 5.880e-13
Identity = 45/136 (33.09%), Postives = 77/136 (56.62%), Query Frame = 1
Query:    1 YLPMAVLGYWAYGDSALSPIYRNICTDGDDCTYWQLLGIWLAVLALTVHVILAYAVILHPTERLLEQLLGVDKLRQPKGKIASVCLRTAIMAATVIVACLVPDFTDFMNLVSSLSSTFTSFVFPCFFHAVIFWKDV 408
            YLP A+L Y  +GD+  SP+  ++ T     +    + I LA++A+T+H+ L   ++ +P     E++  +DK +     +  +  RTAI+A  V+VAC+V DF DFM+L+ S   + T F FPC  +  + W ++
Sbjct:  670 YLPPAILPYIYFGDAVKSPVLESLSTAVAGLSRSYTVPIDLALVAITLHLWLTIPILNNPVFLYFEEVTRLDKAKA--APVYRILYRTAILALQVLVACVVKDFGDFMDLLGSTVISATVFFFPCLMYLKLNWNNI 803          
BLAST of mRNA_M-pyrifera_M_contig117758.3662.1 vs. uniprot
Match: A0A6T2CKH0_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A6T2CKH0_9EUGL)

HSP 1 Score: 70.5 bits (171), Expect = 1.600e-11
Identity = 47/138 (34.06%), Postives = 76/138 (55.07%), Query Frame = 1
Query:    1 YLPMAVLGYWAYGDSALSPIYRNICTDGDDCTYWQLLGIWLAVLALTVHVILAYAVILHPTERLLE-QLLGVDKLRQP----KGKIAS-----VCLRTAIMAATVIVACLVPDFTDFMNLVSSLSSTFTSFVFPCFFH 384
            YLP+AV+GYWA+GD    PI++N          +    + + V+ L  HV+++YA+I++P E   E Q++   K+R      K  + +     + LR  +   TV +A  VP F   ++LVSS++ T TSF+FP  F+
Sbjct:  285 YLPVAVIGYWAFGDKVQDPIFKN----------FDSAAVNVVVVLLLAHVVMSYAIIMNPPELAFEDQVVDCIKVRSSSALQKALVGNRWPLRLVLRLCLTGLTVFIAKAVPCFPVLLSLVSSVTGTTTSFIFPVLFY 412          
BLAST of mRNA_M-pyrifera_M_contig117758.3662.1 vs. uniprot
Match: A0A7S1NFX0_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1NFX0_9EUGL)

HSP 1 Score: 67.8 bits (164), Expect = 1.400e-10
Identity = 50/146 (34.25%), Postives = 79/146 (54.11%), Query Frame = 1
Query:    1 YLPMAVLGYWAYGDSALSPIYRNICTDGDDCTYWQLLGIWLAVLALTVHVILAYAVILHPTERLLE-QLLGVDKLRQPKGKI---------ASVCLRTAIMAATVIVACLVPDFTDFMNLVSSLSSTFTSFVFPCFFHAVIFWKDV 408
            YLP+AV+GYWA+GD    PI++N          +    I + +L L VHV+++YA+I++P E  LE Q++ +    Q    +           + LR  +   T+ +A  VP F   ++LVSS++ T TSF+FP  F+  +  KDV
Sbjct:  282 YLPVAVIGYWAFGDKVADPIFKN----------FDSAAINIVILLLLVHVMMSYAIIMNPPELALEDQVVKMINGSQHAQLLHFASHHRWSLRMLLRIGLTLLTMGIARAVPCFPILLSLVSSVTGTTTSFIFPVLFYRRVV-KDV 416          
BLAST of mRNA_M-pyrifera_M_contig117758.3662.1 vs. uniprot
Match: A0A4Y2NH25_ARAVE (Aa_trans domain-containing protein n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2NH25_ARAVE)

HSP 1 Score: 57.0 bits (136), Expect = 8.140e-7
Identity = 41/128 (32.03%), Postives = 69/128 (53.91%), Query Frame = 1
Query:    1 YLPMAVLGYWAYGDSALSPIYRNICTDGDDCTYWQLLGIWLAVLALTVHVILAYAVILHPTERLLEQLLGVDKLRQPKGKIASVCLRTAIMAATVIVACLVPDFTDFMNLVSSLSSTFTSFVFPCFFH 384
            Y+P+AVLGY+ YGD  ++ +         D   + +    ++V+ L +H+  A+ ++++   + LE+   + K    K     V LRTA+M A V VA  +P F   +NLV   ++T TS +FPC F+
Sbjct:  271 YMPVAVLGYYVYGDHLVANVL--------DSLPFSIAKSAISVM-LALHMFFAFLLVINAPVQDLEEFFKLPKTFGWKR----VTLRTAVMVAAVFVALSIPRFGKVLNLVGGSATTLTSVIFPCVFY 385          
BLAST of mRNA_M-pyrifera_M_contig117758.3662.1 vs. uniprot
Match: A0A367KV43_RHIST (Aa_trans domain-containing protein n=1 Tax=Rhizopus stolonifer TaxID=4846 RepID=A0A367KV43_RHIST)

HSP 1 Score: 56.6 bits (135), Expect = 1.100e-6
Identity = 41/128 (32.03%), Postives = 67/128 (52.34%), Query Frame = 1
Query:    1 YLPMAVLGYWAYGDSALSPIYRNICTDGDDCTYWQLLGIWLAVLALTVHVILAYAVILHPTERLLEQLLGVDKLRQPKGKIASVCLRTAIMAAT----VIVACLVPDFTDFMNLVSSLSSTFTSFVFP 372
            Y   A+ GY+++G S  SP+Y+++  +G         G  L+++ +T+HVILA  +         EQ +     R   GKI +  +R+ I A T    V++AC +P F DFM L+ +LS+    F+ P
Sbjct:  273 YFLAAISGYYSFGSSVQSPVYKSL-PEGS--------GKLLSMIVMTIHVILAIPIFSTSFSLEFEQFVNCTDERY--GKIGAWAIRSTIRACTMTILVVLACFIPYFDDFMGLIGALSTCGLVFLLP 389          
BLAST of mRNA_M-pyrifera_M_contig117758.3662.1 vs. uniprot
Match: UPI001FB0CB0E (amino acid transporter AVT1C-like n=1 Tax=Impatiens glandulifera TaxID=253017 RepID=UPI001FB0CB0E)

HSP 1 Score: 55.5 bits (132), Expect = 2.900e-6
Identity = 38/125 (30.40%), Postives = 68/125 (54.40%), Query Frame = 1
Query:    1 YLPMAVLGYWAYGDSALSPIYRNICTDGDDCTYWQLLGIWLAVLALTVHVILAYAVILHPTERLLEQLLGVDKLRQPKGKIASVCLRTAIMAATVIVACLVPDFTDFMNLVSSLSSTFTSFVFPC 375
            Y  +AV+GY  +G+S LS    N+  +        L+   +AV    V+ +  YA+ + P    LE+L+  ++L   K  + ++C+RTA++ +T++VA  +P F   M L+ SL +   + +FPC
Sbjct:  390 YASVAVMGYMMFGESTLSQFTLNMPQN--------LVSSKVAVWTTVVNPLTKYALTMTPVALALEELIPSNQL---KSHVYAICIRTALVISTLLVALSIPFFGLVMALIGSLLTMLVTLIFPC 503          
BLAST of mRNA_M-pyrifera_M_contig117758.3662.1 vs. uniprot
Match: UPI0008F9B9E9 (lysine histidine transporter-like 2 n=1 Tax=Bemisia tabaci TaxID=7038 RepID=UPI0008F9B9E9)

HSP 1 Score: 55.1 bits (131), Expect = 3.830e-6
Identity = 40/128 (31.25%), Postives = 69/128 (53.91%), Query Frame = 1
Query:    1 YLPMAVLGYWAYGDSALSPIYRNICTDGDDCTYWQLLGIWLAVLALTVHVILAYAVILHPTERLLEQLLGVDKLRQPKGKIASVCLRTAIMAATVIVACLVPDFTDFMNLVSSLSSTFTSFVFPCFFH 384
            Y P+ + GY+ YGDS    I  N+       T      + LA +A+ +H+ILA+ +I++P  + LE++L V     P+  +    +RT ++   +IV   VP F+  ++LV   + T T+FV P +F+
Sbjct:  289 YSPLVIGGYYIYGDS----IQPNVVMSLSHTTL-----VSLANIAMAIHLILAFLIIINPVCQDLEEMLQVP----PEFCLKRCIVRTCMIMLMIIVGATVPRFSKILSLVGGSTITLTTFVLPNYFY 403          
BLAST of mRNA_M-pyrifera_M_contig117758.3662.1 vs. uniprot
Match: A9SV11_PHYPA (Predicted protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9SV11_PHYPA)

HSP 1 Score: 53.5 bits (127), Expect = 1.320e-5
Identity = 44/138 (31.88%), Postives = 70/138 (50.72%), Query Frame = 1
Query:    1 YLPMAVLGYWAYGDSALSPIYRNICTD-GDDCTYWQLLGIW-LAVLALTVHVILAYAVILHPTERLLEQLLGVDKLRQPKGKIASVC----LRTAIMAATVIVACLVPDFTDFMNLVSSLSSTFTSFVFPCFFHAVIF 396
            + P+A+ GYWA+G+ A   I  N+  D G D     LLGI  +A++A  + + L Y   L P   +LE   G  K  Q K  I +V      R+  +A   ++A ++P F D ++L+ +   T   FV P  F+ ++F
Sbjct:  283 FYPVAISGYWAFGNQASGNIVDNLAPDKGPDLLPTWLLGILSIAIVAQLLAIGLVY---LQPISEVLESKTGDAK--QGKYSIRNVMPRLVFRSLYLAVVTLLAAMLPFFGDIISLIGAFGYTPLDFVLPMLFYQIVF 415          
BLAST of mRNA_M-pyrifera_M_contig117758.3662.1 vs. uniprot
Match: UPI001CFA188A (amino acid transporter AVT1C-like n=1 Tax=Mangifera indica TaxID=29780 RepID=UPI001CFA188A)

HSP 1 Score: 52.0 bits (123), Expect = 4.670e-5
Identity = 37/125 (29.60%), Postives = 65/125 (52.00%), Query Frame = 1
Query:    1 YLPMAVLGYWAYGDSALSPIYRNICTDGDDCTYWQLLGIWLAVLALTVHVILAYAVILHPTERLLEQLLGVDKLRQPKGKIASVCLRTAIMAATVIVACLVPDFTDFMNLVSSLSSTFTSFVFPC 375
            Y  +AV+GY  +G+S +S    N+  D        L+   +AV    V+    YA+ + P    LE+L+  + L   K  + ++C+RTA++ +T++VA  VP F   M+L+ S  +   + + PC
Sbjct:  390 YAGVAVMGYTMFGESTMSQFTLNMPKD--------LVASKIAVWTTVVNPFTKYALTMSPVALSLEELIPSNHL---KSHVYAICIRTALVLSTLLVALTVPFFGLVMSLIGSSLTMLVTLILPC 503          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig117758.3662.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A7S4MKX5_9EUKA3.840e-4454.35Hypothetical protein (Fragment) n=1 Tax=Vannella s... [more]
A0A2P6NW86_9EUKA5.880e-1333.09Aa_trans domain-containing protein n=1 Tax=Planopr... [more]
A0A6T2CKH0_9EUGL1.600e-1134.06Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A7S1NFX0_9EUGL1.400e-1034.25Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A4Y2NH25_ARAVE8.140e-732.03Aa_trans domain-containing protein n=1 Tax=Araneus... [more]
A0A367KV43_RHIST1.100e-632.03Aa_trans domain-containing protein n=1 Tax=Rhizopu... [more]
UPI001FB0CB0E2.900e-630.40amino acid transporter AVT1C-like n=1 Tax=Impatien... [more]
UPI0008F9B9E93.830e-631.25lysine histidine transporter-like 2 n=1 Tax=Bemisi... [more]
A9SV11_PHYPA1.320e-531.88Predicted protein n=1 Tax=Physcomitrium patens Tax... [more]
UPI001CFA188A4.670e-529.60amino acid transporter AVT1C-like n=1 Tax=Mangifer... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig117758contigM-pyrifera_M_contig117758:3..547 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.5
Seed ortholog evalue8.3e-08
Seed eggNOG ortholog35128.Thaps26635
KEGG koko:K10569,ko:K14209
KEGG TC2.A.18.8
KEGG Pathwayko03410,ko04138,map03410,map04138
Hectar predicted targeting categorysignal anchor
GOsGO:0003333,GO:0003674,GO:0005215,GO:0005342,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005783,GO:0005789,GO:0006810,GO:0006811,GO:0006820,GO:0006865,GO:0008150,GO:0008509,GO:0008514,GO:0009605,GO:0009607,GO:0009624,GO:0012505,GO:0015075,GO:0015171,GO:0015173,GO:0015175,GO:0015318,GO:0015711,GO:0015801,GO:0015804,GO:0015849,GO:0016020,GO:0022857,GO:0031090,GO:0031984,GO:0034220,GO:0042175,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0046942,GO:0046943,GO:0050896,GO:0051179,GO:0051234,GO:0051704,GO:0051707,GO:0055085,GO:0071702,GO:0071705,GO:0098588,GO:0098656,GO:0098805,GO:0098827,GO:1903825,GO:1905039
EggNOG free text desc.Transmembrane amino acid transporter protein
EggNOG OGs2XCU3@2836,COG0814@1,KOG1304@2759
COG Functional cat.E
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000,ko03400,ko04131
Exons2
Model size408
Cds size399
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig117758.3662.1prot_M-pyrifera_M_contig117758.3662.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig117758 12..547 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815694.768184-UTR-M-pyrifera_M_contig117758:2..111622815694.768184-UTR-M-pyrifera_M_contig117758:2..11Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig117758 3..11 +
1692277525.4574678-UTR-M-pyrifera_M_contig117758:2..111692277525.4574678-UTR-M-pyrifera_M_contig117758:2..11Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig117758 3..11 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815694.781341-CDS-M-pyrifera_M_contig117758:11..2621622815694.781341-CDS-M-pyrifera_M_contig117758:11..262Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117758 12..262 +
1692277525.4713736-CDS-M-pyrifera_M_contig117758:11..2621692277525.4713736-CDS-M-pyrifera_M_contig117758:11..262Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117758 12..262 +
1622815694.800634-CDS-M-pyrifera_M_contig117758:399..5471622815694.800634-CDS-M-pyrifera_M_contig117758:399..547Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117758 400..547 +
1692277525.4788027-CDS-M-pyrifera_M_contig117758:399..5471692277525.4788027-CDS-M-pyrifera_M_contig117758:399..547Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117758 400..547 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig117758.3662.1

>prot_M-pyrifera_M_contig117758.3662.1 ID=prot_M-pyrifera_M_contig117758.3662.1|Name=mRNA_M-pyrifera_M_contig117758.3662.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=133bp
MAVLGYWAYGDSALSPIYRNICTDGDDCTYWQLLGIWLAVLALTVHVILA
YAVILHPTERLLEQLLGVDKLRQPKGKIASVCLRTAIMAATVIVACLVPD
FTDFMNLVSSLSSTFTSFVFPCFFHAVIFWKDV
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mRNA from alignment at M-pyrifera_M_contig117758:3..547+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig117758.3662.1 ID=mRNA_M-pyrifera_M_contig117758.3662.1|Name=mRNA_M-pyrifera_M_contig117758.3662.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=545bp|location=Sequence derived from alignment at M-pyrifera_M_contig117758:3..547+ (Macrocystis pyrifera P11B4 male)
TACCTACCCATGGCCGTGCTCGGCTATTGGGCCTACGGCGACAGTGCCCT CTCTCCCATCTACCGAAACATCTGCACGGATGGAGACGACTGCACATACT GGCAGTTGCTGGGAATTTGGTTGGCTGTCCTGGCACTCACTGTGCATGTG ATCCTTGCTTACGCCGTCATTCTTCACCCCACCGAGCGTCTCCTCGAGCA GCTCCTTGGCGTTGACAAGCTGCGCCAACCCAAGGGCAAAATTGCCAGCG TTTGTCTCCGGTTCGTCTGACTGTTTCCTCACTATTCCCTCCCAATATTG CCTTTTCTCTCGCTCACTATCATTTCACGCTGGCTCTCGCTTGGTTCACG CAGATCGTTTCACTGTCTCGCCTACATTCCAGCTTCTGACCGAACAGAAC GGCGATTATGGCCGCTACTGTGATCGTCGCCTGTTTGGTTCCTGACTTCA CTGATTTCATGAACTTGGTCTCATCTCTCTCGAGCACGTTCACCTCGTTT GTGTTTCCTTGCTTCTTCCATGCTGTAATATTTTGGAAAGATGTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig117758:3..547+

>mRNA_M-pyrifera_M_contig117758.3662.1 ID=mRNA_M-pyrifera_M_contig117758.3662.1|Name=mRNA_M-pyrifera_M_contig117758.3662.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=798bp|location=Sequence derived from alignment at M-pyrifera_M_contig117758:3..547+ (Macrocystis pyrifera P11B4 male)
ATGGCCGTGCTCGGCTATTGGGCCTACGGCGACAGTGCCCTCTCTCCCAT
CTACCGAAACATCTGCACGGATGGAGACGACTGCACATACTGGCAGTTGC
TGGGAATTTGGTTGGCTGTCCTGGCACTCACTGTGCATGTGATCCTTGCT
TACGCCGTCATTCTTCACCCCACCGAGCGTCTCCTCGAGCAGCTCCTTGG
CGTTGACAAGCTGCGCCAACCCAAGGGCAAAATTGCCAGCGTTTGTCTCC
GATGGCCGTGCTCGGCTATTGGGCCTACGGCGACAGTGCCCTCTCTCCCA
TCTACCGAAACATCTGCACGGATGGAGACGACTGCACATACTGGCAGTTG
CTGGGAATTTGGTTGGCTGTCCTGGCACTCACTGTGCATGTGATCCTTGC
TTACGCCGTCATTCTTCACCCCACCGAGCGTCTCCTCGAGCAGCTCCTTG
GCGTTGACAAGCTGCGCCAACCCAAGGGCAAAATTGCCAGCGTTTGTCTC
CGAACGGCGATTATGGCCGCTACTGTGATCGTCGCCTGTTTGGTTCCTGA
CTTCACTGATTTCATGAACTTGGTCTCATCTCTCTCGAGCACGTTCACCT
CGTTTGTGTTTCCTTGCTTCTTCCATGCTGTAATATTTTGGAAAGATGTT
AACGGCGATTATGGCCGCTACTGTGATCGTCGCCTGTTTGGTTCCTGACT
TCACTGATTTCATGAACTTGGTCTCATCTCTCTCGAGCACGTTCACCTCG
TTTGTGTTTCCTTGCTTCTTCCATGCTGTAATATTTTGGAAAGATGTT
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