mRNA_M-pyrifera_M_contig117754.3660.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig117754.3660.1
Unique NamemRNA_M-pyrifera_M_contig117754.3660.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig117754.3660.1 vs. uniprot
Match: A0A2P6NAE5_9EUKA (Uncharacterized protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NAE5_9EUKA)

HSP 1 Score: 63.9 bits (154), Expect = 5.040e-10
Identity = 35/80 (43.75%), Postives = 51/80 (63.75%), Query Frame = 1 
Query:    1 FVLKLQARQCADIGDLNALVHEILPLHNG-PVVVEASFDRLVLLARAEESVFQVADVYPALKTYLVAGAEQHCLEELGRL 237
            FVLK+  R C D+  LN     +  L  G P+++EAS++RL ++AR E+SV   A ++PA+K YL A  E+ C EEL +L
Sbjct:  143 FVLKVLGRLCDDMDVLNRKTLYVSSLLEGHPIILEASYERLSVIARMEDSVLLRASIFPAIKYYLKADDEKRCQEELTQL 222
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BLAST of mRNA_M-pyrifera_M_contig117754.3660.1 vs. uniprot
Match: L8GMP7_ACACA (Emp24/gp25L/p24 family protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GMP7_ACACA)

HSP 1 Score: 60.8 bits (146), Expect = 6.260e-9
Identity = 35/86 (40.70%), Postives = 54/86 (62.79%), Query Frame = 1 
Query:    1 FVLKLQARQCADIGDLNALVH---EILPLHNGPVVVEASFDRLVLLARAEESVFQVADVYPALKTYLVAGAEQHCLEELGRLQRNI 249
            FVLK+  +   D+  LNA VH   ++LP    P+++E S++RL+LL R  +S+F    VYPALK +L  G E+ C +E+ +L  +I
Sbjct:  178 FVLKILGKLTTDMEALNAKVHFVEKLLPAT--PILIEVSYERLMLLCRLPDSIFLRPWVYPALKYFLRRGDEELCRQEIAKLVYSI 261
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BLAST of mRNA_M-pyrifera_M_contig117754.3660.1 vs. uniprot
Match: A0A6B2L384_9EUKA (Uncharacterized protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2L384_9EUKA)

HSP 1 Score: 59.3 bits (142), Expect = 2.140e-8
Identity = 26/77 (33.77%), Postives = 51/77 (66.23%), Query Frame = 1 
Query:    1 FVLKLQARQCADIGDLNALVHEILPLHNGPVVVEASFDRLVLLARAEESVFQVADVYPALKTYLVAGAEQHCLEELG 231
            ++LK+  +   D+ +++ +V+ I    +  ++V+ SF+RL++L++ E+S F    V+P+LK YL  G E+ CL+E+G
Sbjct:  120 YILKVSGKLSDDMAEMSKIVNYIHAKTDVYILVQVSFERLIILSKLEDSCFSKGRVFPSLKYYLKKGDEKQCLDEIG 196
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig117754.3660.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2P6NAE5_9EUKA5.040e-1043.75Uncharacterized protein n=1 Tax=Planoprotostelium ... [more]
L8GMP7_ACACA6.260e-940.70Emp24/gp25L/p24 family protein n=1 Tax=Acanthamoeb... [more]
A0A6B2L384_9EUKA2.140e-833.77Uncharacterized protein n=1 Tax=Arcella intermedia... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig117754contigM-pyrifera_M_contig117754:41..289 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size249
Cds size249
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815694.7071855-CDS-M-pyrifera_M_contig117754:40..2891622815694.7071855-CDS-M-pyrifera_M_contig117754:40..289Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117754 41..289 -
1692277525.4337344-CDS-M-pyrifera_M_contig117754:40..2891692277525.4337344-CDS-M-pyrifera_M_contig117754:40..289Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117754 41..289 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig117754.3660.1prot_M-pyrifera_M_contig117754.3660.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig117754 41..289 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig117754.3660.1

>prot_M-pyrifera_M_contig117754.3660.1 ID=prot_M-pyrifera_M_contig117754.3660.1|Name=mRNA_M-pyrifera_M_contig117754.3660.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=83bp
FVLKLQARQCADIGDLNALVHEILPLHNGPVVVEASFDRLVLLARAEESV
FQVADVYPALKTYLVAGAEQHCLEELGRLQRNI
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mRNA from alignment at M-pyrifera_M_contig117754:41..289-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig117754.3660.1 ID=mRNA_M-pyrifera_M_contig117754.3660.1|Name=mRNA_M-pyrifera_M_contig117754.3660.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=249bp|location=Sequence derived from alignment at M-pyrifera_M_contig117754:41..289- (Macrocystis pyrifera P11B4 male)
TTTGTGCTGAAGCTGCAGGCGAGGCAATGCGCCGACATTGGTGACCTGAA
TGCGCTCGTGCATGAGATTCTGCCCCTCCACAACGGACCTGTGGTGGTGG
AGGCCTCCTTCGACCGCCTCGTCCTCCTCGCCCGGGCAGAGGAGTCTGTC
TTCCAGGTGGCAGACGTCTACCCTGCGCTCAAGACGTACTTGGTGGCGGG
AGCGGAGCAACACTGCTTGGAGGAGCTCGGCCGGCTCCAGAGGAACATA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig117754:41..289-

>mRNA_M-pyrifera_M_contig117754.3660.1 ID=mRNA_M-pyrifera_M_contig117754.3660.1|Name=mRNA_M-pyrifera_M_contig117754.3660.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=498bp|location=Sequence derived from alignment at M-pyrifera_M_contig117754:41..289- (Macrocystis pyrifera P11B4 male)
TTTGTGCTGAAGCTGCAGGCGAGGCAATGCGCCGACATTGGTGACCTGAA
TGCGCTCGTGCATGAGATTCTGCCCCTCCACAACGGACCTGTGGTGGTGG
AGGCCTCCTTCGACCGCCTCGTCCTCCTCGCCCGGGCAGAGGAGTCTGTC
TTCCAGGTGGCAGACGTCTACCCTGCGCTCAAGACGTACTTGGTGGCGGG
AGCGGAGCAACACTGCTTGGAGGAGCTCGGCCGGCTCCAGAGGAACATAT
TTGTGCTGAAGCTGCAGGCGAGGCAATGCGCCGACATTGGTGACCTGAAT
GCGCTCGTGCATGAGATTCTGCCCCTCCACAACGGACCTGTGGTGGTGGA
GGCCTCCTTCGACCGCCTCGTCCTCCTCGCCCGGGCAGAGGAGTCTGTCT
TCCAGGTGGCAGACGTCTACCCTGCGCTCAAGACGTACTTGGTGGCGGGA
GCGGAGCAACACTGCTTGGAGGAGCTCGGCCGGCTCCAGAGGAACATA
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