mRNA_M-pyrifera_M_contig117750.3659.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_M-pyrifera_M_contig117750.3659.1
Unique Name	mRNA_M-pyrifera_M_contig117750.3659.1
Type	mRNA
Organism	Macrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))

Homology

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BLAST of mRNA_M-pyrifera_M_contig117750.3659.1 vs. uniprot
Match: A0A351EPP1_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A351EPP1_9ACTN)

HSP 1 Score: 122 bits (307), Expect = 2.020e-33
Identity = 58/100 (58.00%), Postives = 73/100 (73.00%), Query Frame = 1

Query:    1 NPDHAALLAANGHTRQTVAEGIVERAVVPGRELLRAAGSMVRTD-PERDYRCFGSPEDLLIFVAGGGGLYSAAFPSWCAGPHRNQSVTVEIETDQACEIP 297
            N DHA  LA  G+   ++ + +VERA + G E  ++AG M +    + DYRCF +PEDLL+FVAGGGGLYS AFP+WCAGPH N++VTVEIE  QACEIP
Sbjct:   68 NADHAGFLANAGYDLTSIRDAVVERASISGVEFAKSAGYMGKQPIADDDYRCFNAPEDLLVFVAGGGGLYSVAFPTWCAGPHVNRAVTVEIEVGQACEIP 167

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BLAST of mRNA_M-pyrifera_M_contig117750.3659.1 vs. uniprot
Match: A0A7Y3GYD0_9DELT (Uncharacterized protein n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A7Y3GYD0_9DELT)

HSP 1 Score: 112 bits (281), Expect = 7.520e-28
Identity = 57/101 (56.44%), Postives = 73/101 (72.28%), Query Frame = 1

Query:    1 NPDHAALLAANGHTRQTVAEGIVERAVVPGRELLR--AAGSMVRTDPERDYRCFGSPEDLLIFVAGGGGLYSAAFPSWCAGPHRNQSVTVEIETDQACEIP 297
            NP HA  LAA GHTR+++AE I +RA+    +L R  AAG   + DP    RCF S +D+LI VAGGGGLYS+  P+WCAGPHRN++V+V I+ DQACE+P
Sbjct:  256 NPGHARALAAAGHTRKSIAETICDRALNSRLDLERTGAAGIAPKKDP---LRCFASADDVLIAVAGGGGLYSSVMPTWCAGPHRNRAVSVAIDLDQACEVP 353

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BLAST of mRNA_M-pyrifera_M_contig117750.3659.1 vs. uniprot
Match: A0A2D6VEF7_9GAMM (Uncharacterized protein (Fragment) n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2D6VEF7_9GAMM)

HSP 1 Score: 92.0 bits (227), Expect = 4.660e-22
Identity = 43/99 (43.43%), Postives = 59/99 (59.60%), Query Frame = 1

Query:    1 NPDHAALLAANGHTRQTVAEGIVERAVVPGRELLRAAGSMVRTDPERDYRCFGSPEDLLIFVAGGGGLYSAAFPSWCAGPHRNQSVTVEIETDQACEIP 297
            NP+HA + A    TR  + +G+ +    P   L   A        +++YRCF  PED+L+ +AGG GLYS   PSWCAG +RN+ V+  IETDQ CE+P
Sbjct:   12 NPEHAEIFARANMTRGDIQQGLWQATHYPKDRLAYFAQGFAARFRDQEYRCFERPEDILVLMAGGSGLYSMVMPSWCAGANRNRYVSQIIETDQFCEVP 110

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BLAST of mRNA_M-pyrifera_M_contig117750.3659.1 vs. uniprot
Match: A0A6L7M316_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A6L7M316_9GAMM)

HSP 1 Score: 94.0 bits (232), Expect = 1.320e-21
Identity = 50/103 (48.54%), Postives = 66/103 (64.08%), Query Frame = 1

Query:    1 NPDHAALLAANGHTRQTVAEGIVERAVVPGRELLRAAGSMV--RTDPERDYR--CFGSPEDLLIFVAGGGGLYSAAFPSWCAGPHRNQSVTVEIETDQACEIP 297
            NP+HAA+LA  G  R+ +AE +         EL R A +    RT+   + R  CF SP+D+LI VAGG GLYS   P+WCAGPHRN++V+V++E  Q CEIP
Sbjct:  124 NPEHAAVLADAGLNRRGIAERLHGLCAHSPDELARYAAAFASRRTESAANSRRSCFASPDDILIAVAGGTGLYSMVMPTWCAGPHRNRAVSVQVEMAQFCEIP 226

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BLAST of mRNA_M-pyrifera_M_contig117750.3659.1 vs. uniprot
Match: A0A6L8AXW2_9GAMM (Uncharacterized protein n=2 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A6L8AXW2_9GAMM)

HSP 1 Score: 95.9 bits (237), Expect = 1.870e-21
Identity = 51/103 (49.51%), Postives = 66/103 (64.08%), Query Frame = 1

Query:    1 NPDHAALLAANGHTRQTVAEGIVERAVVPGRELLRAAGSMV--RTDPERDYR--CFGSPEDLLIFVAGGGGLYSAAFPSWCAGPHRNQSVTVEIETDQACEIP 297
            NP+HAA+LA  G  R+ +AE +         EL R A +    RT+   D R  CF SP+D+LI VAGG GLYS   P+WCAGPHRN++V+V++E  Q CEIP
Sbjct:  254 NPEHAAVLADAGLNRRGIAERLHGLCAHSPDELARYAAAFASRRTESAADSRRSCFASPDDILIAVAGGTGLYSMVMPTWCAGPHRNRAVSVQVEMAQFCEIP 356

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BLAST of mRNA_M-pyrifera_M_contig117750.3659.1 vs. uniprot
Match: A0A6P2BBM0_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A6P2BBM0_9GAMM)

HSP 1 Score: 90.5 bits (223), Expect = 1.790e-19
Identity = 43/100 (43.00%), Postives = 61/100 (61.00%), Query Frame = 1

Query:    1 NPDHAALLAANGHTRQTVAEGIVERAVVPGRELLRAAGSMVRTDPERDYR-CFGSPEDLLIFVAGGGGLYSAAFPSWCAGPHRNQSVTVEIETDQACEIP 297
            NPDHA  L + G  R ++   +      P   L R A +  R D +   R CF +PED+L+ +AGG GLYS   P+WCAGPHRN++V+V+++ D  CE+P
Sbjct:  254 NPDHAQTLVSAGLDRASIQARLHALCAHPVGTLKRLAPAFARGDDDSKLRHCFQAPEDILVLMAGGSGLYSMVMPTWCAGPHRNRAVSVKVDLDLFCELP 353

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BLAST of mRNA_M-pyrifera_M_contig117750.3659.1 vs. uniprot
Match: A0A2D5LBK1_9GAMM (Uncharacterized protein n=3 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2D5LBK1_9GAMM)

HSP 1 Score: 90.5 bits (223), Expect = 2.040e-19
Identity = 42/99 (42.42%), Postives = 59/99 (59.60%), Query Frame = 1

Query:    1 NPDHAALLAANGHTRQTVAEGIVERAVVPGRELLRAAGSMVRTDPERDYRCFGSPEDLLIFVAGGGGLYSAAFPSWCAGPHRNQSVTVEIETDQACEIP 297
            NP+HA + A    TR  + +G+ +    P   L   A        +++YRCF  PED+L+ +AGG GLYS   PSWCAG +RN+ V+  IET+Q CE+P
Sbjct:  254 NPEHAEIFARANMTRGDIQQGLWQATHYPKDRLAYFAKGFAARFRDQEYRCFERPEDILVLMAGGSGLYSMVMPSWCAGANRNRYVSQLIETEQFCEVP 352

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BLAST of mRNA_M-pyrifera_M_contig117750.3659.1 vs. uniprot
Match: A0A2E6F7D8_9ACTN (Uncharacterized protein n=3 Tax=root TaxID=1 RepID=A0A2E6F7D8_9ACTN)

HSP 1 Score: 90.1 bits (222), Expect = 2.860e-19
Identity = 44/103 (42.72%), Postives = 58/103 (56.31%), Query Frame = 1

Query:    1 NPDHAALLAANGHTRQTVAEGIVERAVVPGRELLRAAGSMVRTDPERD----YRCFGSPEDLLIFVAGGGGLYSAAFPSWCAGPHRNQSVTVEIETDQACEIP 297
            NPDHA ++AA G TR+ V   +  RA +    L      M+  D + D     +    P  +++F AGG GLY+   PSWCAGPH+N  V  EIE DQACE+P
Sbjct:  253 NPDHAQVIAAAGMTREDVQNELARRATISVGTLREVGSRMIPHDADVDDDDLLQVLKDPSRIIVFQAGGSGLYTMVMPSWCAGPHQNSIVHAEIELDQACEVP 355

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BLAST of mRNA_M-pyrifera_M_contig117750.3659.1 vs. uniprot
Match: A0A2D7FV52_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2D7FV52_9GAMM)

HSP 1 Score: 88.6 bits (218), Expect = 9.180e-19
Identity = 43/100 (43.00%), Postives = 59/100 (59.00%), Query Frame = 1

Query:    1 NPDHAALLAANGHTRQTVAEGIVERAVVPGRELLRAAGSMVRTDPERDYR-CFGSPEDLLIFVAGGGGLYSAAFPSWCAGPHRNQSVTVEIETDQACEIP 297
            NP+HA +LA  G +R+ + + + ER      ++        R +  R +R CF SP+ +L+ VAGG GLYS   PSWCAG HRN +V+  IE D  CEIP
Sbjct:  254 NPEHAQILAEAGLSREDICQALYERCRHSEEDIAAVNPGFARGESTRTHRSCFTSPDQILLMVAGGAGLYSMVMPSWCAGHHRNSAVSRVIELDAFCEIP 353

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BLAST of mRNA_M-pyrifera_M_contig117750.3659.1 vs. uniprot
Match: A0A3E0NYU3_9BACT (Uncharacterized protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A3E0NYU3_9BACT)

HSP 1 Score: 88.2 bits (217), Expect = 1.270e-18
Identity = 47/101 (46.53%), Postives = 58/101 (57.43%), Query Frame = 1

Query:    1 NPDHAALLAANGHTRQTVAEGIVERAVVPGRELLRAAGSMVRTDPERDYR--CFGSPEDLLIFVAGGGGLYSAAFPSWCAGPHRNQSVTVEIETDQACEIP 297
            NPDH  LL   G  R++ AE I E    P  E+ R   ++     +   R   F  P+DLL  VAGG GLYSA FPSWCAGPH N++VTV  +   +CEIP
Sbjct:  253 NPDHVRLLDLAGFERRSAAERICELTTFPRAEMERWIPALRGRGDDETARLAAFRDPDDLLWVVAGGSGLYSAVFPSWCAGPHGNRAVTVSFDPAPSCEIP 353

The following BLAST results are available for this feature:

BLAST of mRNA_M-pyrifera_M_contig117750.3659.1 vs. uniprot

BLAST of mRNA_M-pyrifera_M_contig117750.3659.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A351EPP1_9ACTN	2.020e-33	58.00	Uncharacterized protein n=1 Tax=Acidimicrobiaceae ...	[more]
A0A7Y3GYD0_9DELT	7.520e-28	56.44	Uncharacterized protein n=1 Tax=Myxococcales bacte...	[more]
A0A2D6VEF7_9GAMM	4.660e-22	43.43	Uncharacterized protein (Fragment) n=1 Tax=Gammapr...	[more]
A0A6L7M316_9GAMM	1.320e-21	48.54	Uncharacterized protein n=1 Tax=Gammaproteobacteri...	[more]
A0A6L8AXW2_9GAMM	1.870e-21	49.51	Uncharacterized protein n=2 Tax=Gammaproteobacteri...	[more]
A0A6P2BBM0_9GAMM	1.790e-19	43.00	Uncharacterized protein n=1 Tax=Gammaproteobacteri...	[more]
A0A2D5LBK1_9GAMM	2.040e-19	42.42	Uncharacterized protein n=3 Tax=Gammaproteobacteri...	[more]
A0A2E6F7D8_9ACTN	2.860e-19	42.72	Uncharacterized protein n=3 Tax=root TaxID=1 RepID...	[more]
A0A2D7FV52_9GAMM	9.180e-19	43.00	Uncharacterized protein n=1 Tax=Gammaproteobacteri...	[more]
A0A3E0NYU3_9BACT	1.270e-18	46.53	Uncharacterized protein n=1 Tax=Acidobacteria bact...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
M-pyrifera_M_contig117750	contig	M-pyrifera_M_contig117750:256..552 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90	2022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Bacteria
Seed ortholog score	90.9
Seed ortholog evalue	3.6e-16
Seed eggNOG ortholog	247633.GP2143_02699
Preferred name	tlpA
Hectar predicted targeting category	other localisation
EggNOG free text desc.	COG0526, thiol-disulfide isomerase and thioredoxins
EggNOG OGs	1RC8N@1224,COG0526@1,COG0526@2
COG Functional cat.	CO
Best tax level	Proteobacteria
Best eggNOG OG	NA\|NA\|NA
Exons	1
Model size	297
Cds size	297
Stop	0
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815694.6719046-CDS-M-pyrifera_M_contig117750:255..552	1622815694.6719046-CDS-M-pyrifera_M_contig117750:255..552	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig117750 256..552 -
1692277525.42285-CDS-M-pyrifera_M_contig117750:255..552	1692277525.42285-CDS-M-pyrifera_M_contig117750:255..552	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig117750 256..552 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_M-pyrifera_M_contig117750.3659.1	prot_M-pyrifera_M_contig117750.3659.1	Macrocystis pyrifera P11B4 male	polypeptide	M-pyrifera_M_contig117750 256..552 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at M-pyrifera_M_contig117750:256..552-
coding sequence from alignment at M-pyrifera_M_contig117750:256..552-

protein sequence of mRNA_M-pyrifera_M_contig117750.3659.1

>prot_M-pyrifera_M_contig117750.3659.1 ID=prot_M-pyrifera_M_contig117750.3659.1|Name=mRNA_M-pyrifera_M_contig117750.3659.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=99bp
NPDHAALLAANGHTRQTVAEGIVERAVVPGRELLRAAGSMVRTDPERDYR
CFGSPEDLLIFVAGGGGLYSAAFPSWCAGPHRNQSVTVEIETDQACEIP

mRNA from alignment at M-pyrifera_M_contig117750:256..552-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_M-pyrifera_M_contig117750.3659.1 ID=mRNA_M-pyrifera_M_contig117750.3659.1|Name=mRNA_M-pyrifera_M_contig117750.3659.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=297bp|location=Sequence derived from alignment at M-pyrifera_M_contig117750:256..552- (Macrocystis pyrifera P11B4 male)
AACCCGGATCACGCGGCGCTCCTCGCCGCCAACGGACACACGCGCCAGAC
CGTGGCCGAGGGCATCGTCGAGCGAGCGGTCGTGCCCGGGCGTGAACTCC
TCCGAGCAGCGGGGTCGATGGTTCGCACCGATCCCGAACGTGACTACCGG
TGCTTCGGCTCACCCGAGGATCTGCTGATCTTCGTCGCCGGCGGGGGCGG
GCTCTACTCCGCCGCCTTCCCGTCGTGGTGCGCCGGACCTCACCGGAACC
AGTCGGTCACCGTCGAGATCGAGACCGACCAGGCCTGTGAGATTCCG

Coding sequence (CDS) from alignment at M-pyrifera_M_contig117750:256..552-

>mRNA_M-pyrifera_M_contig117750.3659.1 ID=mRNA_M-pyrifera_M_contig117750.3659.1|Name=mRNA_M-pyrifera_M_contig117750.3659.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=594bp|location=Sequence derived from alignment at M-pyrifera_M_contig117750:256..552- (Macrocystis pyrifera P11B4 male)
AACCCGGATCACGCGGCGCTCCTCGCCGCCAACGGACACACGCGCCAGAC
CGTGGCCGAGGGCATCGTCGAGCGAGCGGTCGTGCCCGGGCGTGAACTCC
TCCGAGCAGCGGGGTCGATGGTTCGCACCGATCCCGAACGTGACTACCGG
TGCTTCGGCTCACCCGAGGATCTGCTGATCTTCGTCGCCGGCGGGGGCGG
GCTCTACTCCGCCGCCTTCCCGTCGTGGTGCGCCGGACCTCACCGGAACC
AGTCGGTCACCGTCGAGATCGAGACCGACCAGGCCTGTGAGATTCCGAAC
CCGGATCACGCGGCGCTCCTCGCCGCCAACGGACACACGCGCCAGACCGT
GGCCGAGGGCATCGTCGAGCGAGCGGTCGTGCCCGGGCGTGAACTCCTCC
GAGCAGCGGGGTCGATGGTTCGCACCGATCCCGAACGTGACTACCGGTGC
TTCGGCTCACCCGAGGATCTGCTGATCTTCGTCGCCGGCGGGGGCGGGCT
CTACTCCGCCGCCTTCCCGTCGTGGTGCGCCGGACCTCACCGGAACCAGT
CGGTCACCGTCGAGATCGAGACCGACCAGGCCTGTGAGATTCCG