mRNA_M-pyrifera_M_contig117657.3647.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig117657.3647.1
Unique NamemRNA_M-pyrifera_M_contig117657.3647.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig117657.3647.1 vs. uniprot
Match: A0A517PGN0_9PLAN (Protein O-GlcNAc transferase n=5 Tax=Gimesia TaxID=1649453 RepID=A0A517PGN0_9PLAN)

HSP 1 Score: 114 bits (284), Expect = 1.810e-26
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 1 
Query:   70 AEDPEAEFEYQAALELAPGNLDTLKNYAVFLSAQNRNEQAIQILREAAALQRDSWEI 240
            AEDPEAEFEYQAALELAPGNLDTLKNYAVFLSAQNRNEQAIQILREAAALQRDSWEI
Sbjct:  187 AEDPEAEFEYQAALELAPGNLDTLKNYAVFLSAQNRNEQAIQILREAAALQRDSWEI 243
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BLAST of mRNA_M-pyrifera_M_contig117657.3647.1 vs. uniprot
Match: A0A6I6ACV5_9PLAN (Tetratricopeptide repeat protein n=1 Tax=Gimesia benthica TaxID=2608982 RepID=A0A6I6ACV5_9PLAN)

HSP 1 Score: 85.9 bits (211), Expect = 1.190e-16
Identity = 43/47 (91.49%), Postives = 46/47 (97.87%), Query Frame = 1 
Query:   70 AEDPEAEFEYQAALELAPGNLDTLKNYAVFLSAQNRNEQAIQILREA 210
            AEDPEAE EYQAALELAPG+LDTLKNYAVFLSA+NRNEQAI+ILREA
Sbjct:  187 AEDPEAEDEYQAALELAPGHLDTLKNYAVFLSARNRNEQAIEILREA 233
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig117657.3647.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A517PGN0_9PLAN1.810e-26100.00Protein O-GlcNAc transferase n=5 Tax=Gimesia TaxID... [more]
A0A6I6ACV5_9PLAN1.190e-1691.49Tetratricopeptide repeat protein n=1 Tax=Gimesia b... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig117657contigM-pyrifera_M_contig117657:49..495 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size447
Cds size447
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815694.180755-CDS-M-pyrifera_M_contig117657:48..4951622815694.180755-CDS-M-pyrifera_M_contig117657:48..495Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117657 49..495 +
1692277525.1995256-CDS-M-pyrifera_M_contig117657:48..4951692277525.1995256-CDS-M-pyrifera_M_contig117657:48..495Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117657 49..495 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig117657.3647.1prot_M-pyrifera_M_contig117657.3647.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig117657 49..495 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig117657.3647.1

>prot_M-pyrifera_M_contig117657.3647.1 ID=prot_M-pyrifera_M_contig117657.3647.1|Name=mRNA_M-pyrifera_M_contig117657.3647.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=149bp
RQVVELAPQLHLSHFNLANTLAKAEDPEAEFEYQAALELAPGNLDTLKNY
AVFLSAQNRNEQAIQILREAAALQRDSWEILNNLGILYAEQENFEKALSC
FREALRLNPDNIEIQFHIGKALEESKQIQDAMIVYREVLGKHPNHPGAA
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mRNA from alignment at M-pyrifera_M_contig117657:49..495+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig117657.3647.1 ID=mRNA_M-pyrifera_M_contig117657.3647.1|Name=mRNA_M-pyrifera_M_contig117657.3647.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=447bp|location=Sequence derived from alignment at M-pyrifera_M_contig117657:49..495+ (Macrocystis pyrifera P11B4 male)
CGCCAGGTCGTGGAACTGGCACCGCAACTGCATCTCTCGCATTTCAATCT
GGCGAACACCCTGGCGAAAGCCGAAGATCCTGAAGCAGAATTTGAATATC
AGGCGGCTCTGGAACTCGCCCCCGGAAACCTGGATACACTTAAAAACTAT
GCCGTCTTCCTCTCAGCACAAAACCGAAATGAGCAGGCCATTCAGATCCT
GAGAGAAGCAGCCGCCTTACAGCGGGATTCCTGGGAGATCCTCAATAACC
TGGGCATTCTGTACGCGGAACAGGAAAACTTTGAGAAGGCACTCTCCTGT
TTTCGTGAAGCGCTGCGCCTCAACCCGGACAACATCGAGATCCAGTTCCA
TATCGGAAAAGCACTGGAAGAATCGAAGCAGATTCAGGATGCTATGATCG
TGTACCGGGAAGTCCTCGGCAAACACCCAAACCATCCCGGTGCCGCT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig117657:49..495+

>mRNA_M-pyrifera_M_contig117657.3647.1 ID=mRNA_M-pyrifera_M_contig117657.3647.1|Name=mRNA_M-pyrifera_M_contig117657.3647.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=894bp|location=Sequence derived from alignment at M-pyrifera_M_contig117657:49..495+ (Macrocystis pyrifera P11B4 male)
CGCCAGGTCGTGGAACTGGCACCGCAACTGCATCTCTCGCATTTCAATCT
GGCGAACACCCTGGCGAAAGCCGAAGATCCTGAAGCAGAATTTGAATATC
AGGCGGCTCTGGAACTCGCCCCCGGAAACCTGGATACACTTAAAAACTAT
GCCGTCTTCCTCTCAGCACAAAACCGAAATGAGCAGGCCATTCAGATCCT
GAGAGAAGCAGCCGCCTTACAGCGGGATTCCTGGGAGATCCTCAATAACC
TGGGCATTCTGTACGCGGAACAGGAAAACTTTGAGAAGGCACTCTCCTGT
TTTCGTGAAGCGCTGCGCCTCAACCCGGACAACATCGAGATCCAGTTCCA
TATCGGAAAAGCACTGGAAGAATCGAAGCAGATTCAGGATGCTATGATCG
TGTACCGGGAAGTCCTCGGCAAACACCCAAACCATCCCGGTGCCGCTCGC
CAGGTCGTGGAACTGGCACCGCAACTGCATCTCTCGCATTTCAATCTGGC
GAACACCCTGGCGAAAGCCGAAGATCCTGAAGCAGAATTTGAATATCAGG
CGGCTCTGGAACTCGCCCCCGGAAACCTGGATACACTTAAAAACTATGCC
GTCTTCCTCTCAGCACAAAACCGAAATGAGCAGGCCATTCAGATCCTGAG
AGAAGCAGCCGCCTTACAGCGGGATTCCTGGGAGATCCTCAATAACCTGG
GCATTCTGTACGCGGAACAGGAAAACTTTGAGAAGGCACTCTCCTGTTTT
CGTGAAGCGCTGCGCCTCAACCCGGACAACATCGAGATCCAGTTCCATAT
CGGAAAAGCACTGGAAGAATCGAAGCAGATTCAGGATGCTATGATCGTGT
ACCGGGAAGTCCTCGGCAAACACCCAAACCATCCCGGTGCCGCT
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