mRNA_M-pyrifera_M_contig117654.3645.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig117654.3645.1
Unique NamemRNA_M-pyrifera_M_contig117654.3645.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig117654.3645.1 vs. uniprot
Match: A0A813BR45_9DINO (UBP7 protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813BR45_9DINO)

HSP 1 Score: 90.1 bits (222), Expect = 7.460e-21
Identity = 41/80 (51.25%), Postives = 55/80 (68.75%), Query Frame = 1
Query:    1 IGPGVGPNFIGTYDCIAVVAHKGLTADSGHYMGWVRLGNSSKWLVYNDDEVSEVTTEHIKGLKGGGDHDMAYFVFYKARE 240
            IG G+   F G Y+  AVV HKG +ADSGHY+ W+R    + WL+++DD+VS VT+E IK L GGGD   AY  FY+A++
Sbjct:  104 IGVGLPAGFQGIYELFAVVTHKGRSADSGHYVAWIREFEDN-WLLFDDDQVSHVTSEDIKKLSGGGDWHTAYLTFYRAKQ 182          
BLAST of mRNA_M-pyrifera_M_contig117654.3645.1 vs. uniprot
Match: A0A7S1CA16_9STRA (Ubiquitinyl hydrolase 1 n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CA16_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 4.550e-20
Identity = 43/79 (54.43%), Postives = 54/79 (68.35%), Query Frame = 1
Query:    1 IGPGVGPNFIGTYDCIAVVAHKGLTADSGHYMGWVRLGNSSKWLVYNDDEVSEVTTEHIKGLKGGGDHDMAYFVFYKAR 237
            +G G+  +F G Y+   VV HKG +ADSGHYMGWVR      WL ++DDEVS+  TE I  LKGGGD+ MAY  FY+A+
Sbjct:  454 VGIGLPEHFRGYYELAGVVTHKGRSADSGHYMGWVRQ-KGDDWLCFDDDEVSQCKTEDIAVLKGGGDYHMAYLCFYRAQ 531          
BLAST of mRNA_M-pyrifera_M_contig117654.3645.1 vs. uniprot
Match: A0A7S3JQ48_9STRA (Ubiquitinyl hydrolase 1 n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JQ48_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 1.410e-19
Identity = 42/77 (54.55%), Postives = 54/77 (70.13%), Query Frame = 1
Query:   10 GVGPNFIGTYDCIAVVAHKGLTADSGHYMGWVRLGNSSKWLVYNDDEVSEVTTEHI-KGLKGGGDHDMAYFVFYKAR 237
            G+   F+G Y+  AVV HKG +AD GHYMGWVR  +  KWLV++DD V+E +TE +   LKGGGD  MAY  FY+A+
Sbjct:  403 GLPAQFLGEYEIFAVVTHKGRSADGGHYMGWVRQ-DKDKWLVFDDDIVTESSTEFVVNNLKGGGDEHMAYLAFYRAK 478          
BLAST of mRNA_M-pyrifera_M_contig117654.3645.1 vs. uniprot
Match: F0YBD6_AURAN (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YBD6_AURAN)

HSP 1 Score: 89.0 bits (219), Expect = 6.850e-19
Identity = 39/69 (56.52%), Postives = 49/69 (71.01%), Query Frame = 1
Query:   31 GTYDCIAVVAHKGLTADSGHYMGWVRLGNSSKWLVYNDDEVSEVTTEHIKGLKGGGDHDMAYFVFYKAR 237
            G Y+  AVV HKG +AD GHYMGWV+  +  KWLV++DD VSE   E +K LKGGGD  M+Y  FY+A+
Sbjct:  409 GVYELFAVVTHKGRSADGGHYMGWVKQ-DGDKWLVFDDDLVSESDAEFVKNLKGGGDEHMSYLQFYRAK 476          
BLAST of mRNA_M-pyrifera_M_contig117654.3645.1 vs. uniprot
Match: A0A482REC1_9ARCH (USP domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482REC1_9ARCH)

HSP 1 Score: 81.6 bits (200), Expect = 1.680e-18
Identity = 38/69 (55.07%), Postives = 48/69 (69.57%), Query Frame = 1
Query:   40 DCIAVVAHKGLTADSGHYMGWVRLGN-SSKWLVYNDDEVSEVTTEHIKG-LKGGGDHDMAYFVFYKARE 240
            +  AVV HKG +ADSGHYM WVR    SS W V++DD VSE  TE++   LKGGGD  M Y +FY+A++
Sbjct:   25 ELFAVVTHKGRSADSGHYMAWVRAKQGSSTWYVFDDDAVSETDTEYVTSRLKGGGDDHMGYMLFYRAKD 93          
BLAST of mRNA_M-pyrifera_M_contig117654.3645.1 vs. uniprot
Match: A0A2D4C8B6_PYTIN (Multifunctional fusion protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C8B6_PYTIN)

HSP 1 Score: 87.8 bits (216), Expect = 2.020e-18
Identity = 41/79 (51.90%), Postives = 52/79 (65.82%), Query Frame = 1
Query:    7 PGVG--PNFIGTYDCIAVVAHKGLTADSGHYMGWVRLGNSSKWLVYNDDEVSEVTTEHIKGLKGGGDHDMAYFVFYKAR 237
            PG+G   +F G Y+  A++ HKG +ADSGHYM WVR      W  Y+DD+VS   TE I+ LKGGGD  MAY  FY+A+
Sbjct:  869 PGIGLPADFQGNYELYAILTHKGRSADSGHYMAWVRH-KGDDWFCYDDDDVSPCKTEDIQKLKGGGDWHMAYLAFYRAK 946          
BLAST of mRNA_M-pyrifera_M_contig117654.3645.1 vs. uniprot
Match: A0A2N1NRK5_9GLOM (Ubiquitin carboxyl-terminal hydrolase n=8 Tax=Rhizophagus TaxID=1129544 RepID=A0A2N1NRK5_9GLOM)

HSP 1 Score: 87.0 bits (214), Expect = 3.400e-18
Identity = 37/76 (48.68%), Postives = 52/76 (68.42%), Query Frame = 1
Query:   13 VGPNFIGTYDCIAVVAHKGLTADSGHYMGWVRLGNSSKWLVYNDDEVSEVTTEHIKGLKGGGDHDMAYFVFYKARE 240
            +G N  G YD  AV+ H G +A+SGHYMGWVR  NS  W+ Y+D++V  V+ E I+ L GGGD  MAY + Y++++
Sbjct:  415 IGANVSGLYDLCAVLTHIGRSAESGHYMGWVRKDNSDDWIQYDDEKVKIVSQEDIQKLDGGGDWHMAYILLYRSKK 490          
BLAST of mRNA_M-pyrifera_M_contig117654.3645.1 vs. uniprot
Match: A0A8K1FF25_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FF25_PYTOL)

HSP 1 Score: 87.0 bits (214), Expect = 3.420e-18
Identity = 40/78 (51.28%), Postives = 51/78 (65.38%), Query Frame = 1
Query:    4 GPGVGPNFIGTYDCIAVVAHKGLTADSGHYMGWVRLGNSSKWLVYNDDEVSEVTTEHIKGLKGGGDHDMAYFVFYKAR 237
            G G+  +F G Y+  A++ HKG +ADSGHYM WVR      W  Y+DD+VS   TE I+ LKGGGD  MAY  FY+A+
Sbjct:  418 GLGLPHDFQGNYELYAILTHKGRSADSGHYMAWVRH-EGDDWFCYDDDDVSPCKTEDIQKLKGGGDWHMAYLAFYRAK 494          
BLAST of mRNA_M-pyrifera_M_contig117654.3645.1 vs. uniprot
Match: K3WGB7_GLOUD (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WGB7_GLOUD)

HSP 1 Score: 87.0 bits (214), Expect = 3.420e-18
Identity = 41/79 (51.90%), Postives = 51/79 (64.56%), Query Frame = 1
Query:    7 PGVG--PNFIGTYDCIAVVAHKGLTADSGHYMGWVRLGNSSKWLVYNDDEVSEVTTEHIKGLKGGGDHDMAYFVFYKAR 237
            PG+G   +F G Y+  A++ HKG +ADSGHYM WVR      W  Y+DD+VS   TE I  LKGGGD  MAY  FY+A+
Sbjct:  418 PGIGLPVDFQGNYELYAILTHKGRSADSGHYMAWVRH-EGDDWFCYDDDDVSPCKTEDINKLKGGGDWHMAYLAFYRAK 495          
BLAST of mRNA_M-pyrifera_M_contig117654.3645.1 vs. uniprot
Match: A0A5D6YB19_9STRA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YB19_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 3.440e-18
Identity = 41/79 (51.90%), Postives = 51/79 (64.56%), Query Frame = 1
Query:    7 PGVG--PNFIGTYDCIAVVAHKGLTADSGHYMGWVRLGNSSKWLVYNDDEVSEVTTEHIKGLKGGGDHDMAYFVFYKAR 237
            PG+G   +F G Y+  A++ HKG +ADSGHYM WVR      W  Y+DD+VS   TE I  LKGGGD  MAY  FY+A+
Sbjct:  421 PGIGLPVDFQGNYELYAILTHKGRSADSGHYMAWVRH-EGDDWFCYDDDDVSPCKTEDINKLKGGGDWHMAYLAFYRAK 498          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig117654.3645.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A813BR45_9DINO7.460e-2151.25UBP7 protein (Fragment) n=1 Tax=Symbiodinium sp. K... [more]
A0A7S1CA16_9STRA4.550e-2054.43Ubiquitinyl hydrolase 1 n=1 Tax=Bicosoecida sp. CB... [more]
A0A7S3JQ48_9STRA1.410e-1954.55Ubiquitinyl hydrolase 1 n=1 Tax=Aureoumbra lagunen... [more]
F0YBD6_AURAN6.850e-1956.52Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Aure... [more]
A0A482REC1_9ARCH1.680e-1855.07USP domain-containing protein n=1 Tax=archaeon Tax... [more]
A0A2D4C8B6_PYTIN2.020e-1851.90Multifunctional fusion protein n=1 Tax=Pythium ins... [more]
A0A2N1NRK5_9GLOM3.400e-1848.68Ubiquitin carboxyl-terminal hydrolase n=8 Tax=Rhiz... [more]
A0A8K1FF25_PYTOL3.420e-1851.28Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
K3WGB7_GLOUD3.420e-1851.90Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Glob... [more]
A0A5D6YB19_9STRA3.440e-1851.90Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Pyth... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig117654contigM-pyrifera_M_contig117654:145..390 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score93.2
Seed ortholog evalue6e-17
Seed eggNOG ortholog2880.D7FPW5
KEGG koko:K11843
Hectar predicted targeting categoryother localisation
EggNOG free text desc.negative regulation of ER-associated ubiquitin-dependent protein catabolic process
EggNOG OGsKOG1872@1,KOG1872@2759
EC3.4.19.12
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04121
Exons1
Model size246
Cds size246
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815694.1053786-CDS-M-pyrifera_M_contig117654:144..3901622815694.1053786-CDS-M-pyrifera_M_contig117654:144..390Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117654 145..390 +
1692277525.163083-CDS-M-pyrifera_M_contig117654:144..3901692277525.163083-CDS-M-pyrifera_M_contig117654:144..390Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117654 145..390 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig117654.3645.1prot_M-pyrifera_M_contig117654.3645.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig117654 145..390 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig117654.3645.1

>prot_M-pyrifera_M_contig117654.3645.1 ID=prot_M-pyrifera_M_contig117654.3645.1|Name=mRNA_M-pyrifera_M_contig117654.3645.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=82bp
IGPGVGPNFIGTYDCIAVVAHKGLTADSGHYMGWVRLGNSSKWLVYNDDE
VSEVTTEHIKGLKGGGDHDMAYFVFYKAREE*
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mRNA from alignment at M-pyrifera_M_contig117654:145..390+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig117654.3645.1 ID=mRNA_M-pyrifera_M_contig117654.3645.1|Name=mRNA_M-pyrifera_M_contig117654.3645.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=246bp|location=Sequence derived from alignment at M-pyrifera_M_contig117654:145..390+ (Macrocystis pyrifera P11B4 male)
ATCGGACCTGGAGTGGGACCAAACTTTATTGGAACCTATGACTGTATTGC AGTTGTGGCACACAAAGGGTTGACTGCAGATTCTGGTCATTACATGGGAT GGGTTCGTCTTGGAAACAGCTCCAAGTGGCTCGTGTACAATGATGACGAA GTATCTGAGGTGACGACAGAACACATCAAGGGGCTTAAAGGGGGTGGAGA CCATGACATGGCATACTTTGTCTTCTACAAAGCCCGAGAGGAATGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig117654:145..390+

>mRNA_M-pyrifera_M_contig117654.3645.1 ID=mRNA_M-pyrifera_M_contig117654.3645.1|Name=mRNA_M-pyrifera_M_contig117654.3645.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=492bp|location=Sequence derived from alignment at M-pyrifera_M_contig117654:145..390+ (Macrocystis pyrifera P11B4 male)
ATCGGACCTGGAGTGGGACCAAACTTTATTGGAACCTATGACTGTATTGC
AGTTGTGGCACACAAAGGGTTGACTGCAGATTCTGGTCATTACATGGGAT
GGGTTCGTCTTGGAAACAGCTCCAAGTGGCTCGTGTACAATGATGACGAA
GTATCTGAGGTGACGACAGAACACATCAAGGGGCTTAAAGGGGGTGGAGA
CCATGACATGGCATACTTTGTCTTCTACAAAGCCCGAGAGGAATGAATCG
GACCTGGAGTGGGACCAAACTTTATTGGAACCTATGACTGTATTGCAGTT
GTGGCACACAAAGGGTTGACTGCAGATTCTGGTCATTACATGGGATGGGT
TCGTCTTGGAAACAGCTCCAAGTGGCTCGTGTACAATGATGACGAAGTAT
CTGAGGTGACGACAGAACACATCAAGGGGCTTAAAGGGGGTGGAGACCAT
GACATGGCATACTTTGTCTTCTACAAAGCCCGAGAGGAATGA
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