mRNA_M-pyrifera_M_contig117645.3644.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig117645.3644.1
Unique NamemRNA_M-pyrifera_M_contig117645.3644.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig117645.3644.1 vs. uniprot
Match: A0A517WLH5_9PLAN (Autoinducer 2 sensor kinase/phosphatase LuxQ n=10 Tax=Gimesia TaxID=1649453 RepID=A0A517WLH5_9PLAN)

HSP 1 Score: 211 bits (536), Expect = 1.500e-63
Identity = 104/111 (93.69%), Postives = 108/111 (97.30%), Query Frame = 1
Query:    1 VLLAEDGPDNQKLISFILKKAGAEVCLAANGEEAYQAAIQEMERGTLFDVILMDMQMPILDGYSATRKVRDVGYTGPIISLTANAMEGDRERCLAVGCNDHITKPIDRRQL 333
            VLLAEDGPDNQKLISFILKK GAEV LA NGEEAYQAAI+EMERG+LFDVILMDMQMPILDGYSATRKVRDVGYTGPIISLTANAMEGDRE+CLAVGCN+HITKPIDRRQL
Sbjct:  434 VLLAEDGPDNQKLISFILKKVGAEVSLAENGEEAYQAAIKEMERGSLFDVILMDMQMPILDGYSATRKVRDVGYTGPIISLTANAMEGDREKCLAVGCNNHITKPIDRRQL 544          
BLAST of mRNA_M-pyrifera_M_contig117645.3644.1 vs. uniprot
Match: A0A517QEY0_9PLAN (Autoinducer 2 sensor kinase/phosphatase LuxQ n=4 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A517QEY0_9PLAN)

HSP 1 Score: 193 bits (490), Expect = 8.840e-57
Identity = 92/111 (82.88%), Postives = 103/111 (92.79%), Query Frame = 1
Query:    1 VLLAEDGPDNQKLISFILKKAGAEVCLAANGEEAYQAAIQEMERGTLFDVILMDMQMPILDGYSATRKVRDVGYTGPIISLTANAMEGDRERCLAVGCNDHITKPIDRRQL 333
            +LLAEDGPDNQKLI+FILKKAGA+V +A NGEEAYQAA+  ME G+LFDVILMDMQMPILDGYSATRKVR+ GY GPIISLTANAMEGDRE+CL+VGCNDHITKPI+RR +
Sbjct:  433 ILLAEDGPDNQKLIAFILKKAGAKVSVAENGEEAYQAALMAMESGSLFDVILMDMQMPILDGYSATRKVREAGYEGPIISLTANAMEGDREKCLSVGCNDHITKPINRRNM 543          
BLAST of mRNA_M-pyrifera_M_contig117645.3644.1 vs. uniprot
Match: A0A517XJA7_9PLAN (Autoinducer 2 sensor kinase/phosphatase LuxQ n=7 Tax=Planctomycetaceae TaxID=126 RepID=A0A517XJA7_9PLAN)

HSP 1 Score: 182 bits (462), Expect = 8.130e-53
Identity = 87/111 (78.38%), Postives = 101/111 (90.99%), Query Frame = 1
Query:    1 VLLAEDGPDNQKLISFILKKAGAEVCLAANGEEAYQAAIQEMERGTLFDVILMDMQMPILDGYSATRKVRDVGYTGPIISLTANAMEGDRERCLAVGCNDHITKPIDRRQL 333
            +LLAEDGPDNQKLISFILKK+GAEV +A NGE A QAA++ ME G L+DVILMDMQMPILDGY ATR +R+ GY+GPIISLTANAMEGDRE+C++VGCNDH+TKPIDRR+L
Sbjct:  416 ILLAEDGPDNQKLISFILKKSGAEVTVAENGEAARQAAMRAMEIGLLYDVILMDMQMPILDGYGATRILREQGYSGPIISLTANAMEGDREKCISVGCNDHVTKPIDRRKL 526          
BLAST of mRNA_M-pyrifera_M_contig117645.3644.1 vs. uniprot
Match: A0A2E2CA77_9PLAN (Uncharacterized protein n=4 Tax=Planctomycetaceae TaxID=126 RepID=A0A2E2CA77_9PLAN)

HSP 1 Score: 182 bits (462), Expect = 8.420e-53
Identity = 86/111 (77.48%), Postives = 101/111 (90.99%), Query Frame = 1
Query:    1 VLLAEDGPDNQKLISFILKKAGAEVCLAANGEEAYQAAIQEMERGTLFDVILMDMQMPILDGYSATRKVRDVGYTGPIISLTANAMEGDRERCLAVGCNDHITKPIDRRQL 333
            VLLAEDGPDNQKLISFIL+K+GAEV +A NGE A QAA++ ME G L+DVILMDMQMPILDGY ATR++R+ GY GPIISLTANAMEGDRE+C++VGCN+H+TKPIDRR+L
Sbjct:  417 VLLAEDGPDNQKLISFILRKSGAEVSVAENGEAALQAAMRSMEIGLLYDVILMDMQMPILDGYGATRRIREQGYPGPIISLTANAMEGDREKCISVGCNEHLTKPIDRRKL 527          
BLAST of mRNA_M-pyrifera_M_contig117645.3644.1 vs. uniprot
Match: A0A517RN05_9PLAN (Autoinducer 2 sensor kinase/phosphatase LuxQ n=1 Tax=Gimesia alba TaxID=2527973 RepID=A0A517RN05_9PLAN)

HSP 1 Score: 181 bits (458), Expect = 3.250e-52
Identity = 84/111 (75.68%), Postives = 100/111 (90.09%), Query Frame = 1
Query:    1 VLLAEDGPDNQKLISFILKKAGAEVCLAANGEEAYQAAIQEMERGTLFDVILMDMQMPILDGYSATRKVRDVGYTGPIISLTANAMEGDRERCLAVGCNDHITKPIDRRQL 333
            +LLAEDGPDNQKLI+FILKKAGAEV +A NGE A QAA++ ME G L+DVILMDMQMPILDGY ATRK+R+ GY+GPIISLTANAMEGDRE+C+  GCNDHITKP++R+++
Sbjct:  418 ILLAEDGPDNQKLIAFILKKAGAEVTIAENGEVARQAAVKAMETGLLYDVILMDMQMPILDGYGATRKIREHGYSGPIISLTANAMEGDREKCINAGCNDHITKPVNRKKM 528          
BLAST of mRNA_M-pyrifera_M_contig117645.3644.1 vs. uniprot
Match: A0A517VLP3_9PLAN (Autoinducer 2 sensor kinase/phosphatase LuxQ n=1 Tax=Gimesia algae TaxID=2527971 RepID=A0A517VLP3_9PLAN)

HSP 1 Score: 178 bits (451), Expect = 3.380e-51
Identity = 84/111 (75.68%), Postives = 101/111 (90.99%), Query Frame = 1
Query:    1 VLLAEDGPDNQKLISFILKKAGAEVCLAANGEEAYQAAIQEMERGTLFDVILMDMQMPILDGYSATRKVRDVGYTGPIISLTANAMEGDRERCLAVGCNDHITKPIDRRQL 333
            +LLAEDGPDNQKLISFILKK+GAEV +A NGE A +AA++ +E G L+DV+LMDMQMPILDGYSATR +R+ GY GPIISLTANAMEGDRE+C++VGC+DH+TKPIDRR+L
Sbjct:  417 ILLAEDGPDNQKLISFILKKSGAEVTVAENGEAARKAAMRALEIGLLYDVVLMDMQMPILDGYSATRLLREQGYPGPIISLTANAMEGDREKCISVGCDDHLTKPIDRRKL 527          
BLAST of mRNA_M-pyrifera_M_contig117645.3644.1 vs. uniprot
Match: A0A517VPT1_9PLAN (Autoinducer 2 sensor kinase/phosphatase LuxQ n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517VPT1_9PLAN)

HSP 1 Score: 176 bits (447), Expect = 1.340e-50
Identity = 84/111 (75.68%), Postives = 96/111 (86.49%), Query Frame = 1
Query:    1 VLLAEDGPDNQKLISFILKKAGAEVCLAANGEEAYQAAIQEMERGTLFDVILMDMQMPILDGYSATRKVRDVGYTGPIISLTANAMEGDRERCLAVGCNDHITKPIDRRQL 333
            VLLAEDGPDNQKLI+FILKKAGAEV +A NGE A Q A++ ME G  +DVILMDMQMPILDGY ATR++R+ GY GPIISLTANAMEGDRE+C+  GCNDH+TKPIDR +L
Sbjct:  418 VLLAEDGPDNQKLIAFILKKAGAEVTVAENGEVARQKAVEAMESGVHYDVILMDMQMPILDGYEATRQIREHGYPGPIISLTANAMEGDREKCIEAGCNDHLTKPIDRNKL 528          
BLAST of mRNA_M-pyrifera_M_contig117645.3644.1 vs. uniprot
Match: A0A518IJZ7_9PLAN (Autoinducer 2 sensor kinase/phosphatase LuxQ n=1 Tax=Gimesia fumaroli TaxID=2527976 RepID=A0A518IJZ7_9PLAN)

HSP 1 Score: 176 bits (446), Expect = 1.880e-50
Identity = 81/111 (72.97%), Postives = 100/111 (90.09%), Query Frame = 1
Query:    1 VLLAEDGPDNQKLISFILKKAGAEVCLAANGEEAYQAAIQEMERGTLFDVILMDMQMPILDGYSATRKVRDVGYTGPIISLTANAMEGDRERCLAVGCNDHITKPIDRRQL 333
            +LLAEDGPDNQKLI+FILKKAGAEV +A NGE A QAA++ +E G L+DVILMDMQMP+LDGY AT+K+R+ GY+GPIISLTANAMEGDRE+C+  GCNDHITKP++R+++
Sbjct:  418 ILLAEDGPDNQKLIAFILKKAGAEVTVAENGEVARQAALKALEIGLLYDVILMDMQMPVLDGYEATQKIREHGYSGPIISLTANAMEGDREKCINAGCNDHITKPVNRKKM 528          
BLAST of mRNA_M-pyrifera_M_contig117645.3644.1 vs. uniprot
Match: X0WEJ7_9ZZZZ (Response regulatory domain-containing protein n=1 Tax=marine sediment metagenome TaxID=412755 RepID=X0WEJ7_9ZZZZ)

HSP 1 Score: 153 bits (386), Expect = 1.410e-45
Identity = 72/111 (64.86%), Postives = 90/111 (81.08%), Query Frame = 1
Query:    1 VLLAEDGPDNQKLISFILKKAGAEVCLAANGEEAYQAAIQEMERGTLFDVILMDMQMPILDGYSATRKVRDVGYTGPIISLTANAMEGDRERCLAVGCNDHITKPIDRRQL 333
            +LLAEDG DNQ+LISF+LKKAGAEV +A NG  A+  A+   + G  FDVILMDMQMP++DGY AT K+R  G+TGPII+LTA+AM  DR+RCLA GC+D++TKPIDR +L
Sbjct:   18 ILLAEDGTDNQRLISFLLKKAGAEVAVAENGLIAHDLALAARDEGNPFDVILMDMQMPVMDGYDATGKLRKAGFTGPIIALTAHAMSTDRDRCLAAGCDDYMTKPIDREKL 128          
BLAST of mRNA_M-pyrifera_M_contig117645.3644.1 vs. uniprot
Match: A0A3M1QRW9_9BACT (Histidine kinase n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3M1QRW9_9BACT)

HSP 1 Score: 160 bits (406), Expect = 5.590e-44
Identity = 78/111 (70.27%), Postives = 92/111 (82.88%), Query Frame = 1
Query:    1 VLLAEDGPDNQKLISFILKKAGAEVCLAANGEEAYQAAIQEMERGTLFDVILMDMQMPILDGYSATRKVRDVGYTGPIISLTANAMEGDRERCLAVGCNDHITKPIDRRQL 333
            +LLAEDGPDNQ+LI+FILKKAGAEV LA NG+ A +AA    ERG  FDVILMDMQMP++DGY+ATR +RD G+  PII++TA+AM GDRERCLA GC D  TKPIDR+QL
Sbjct:  548 ILLAEDGPDNQRLITFILKKAGAEVELAENGQLAVEAAKAHAERGEPFDVILMDMQMPVMDGYTATRTLRDAGFETPIIAVTAHAMTGDRERCLAAGCTDFTTKPIDRKQL 658          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig117645.3644.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A517WLH5_9PLAN1.500e-6393.69Autoinducer 2 sensor kinase/phosphatase LuxQ n=10 ... [more]
A0A517QEY0_9PLAN8.840e-5782.88Autoinducer 2 sensor kinase/phosphatase LuxQ n=4 T... [more]
A0A517XJA7_9PLAN8.130e-5378.38Autoinducer 2 sensor kinase/phosphatase LuxQ n=7 T... [more]
A0A2E2CA77_9PLAN8.420e-5377.48Uncharacterized protein n=4 Tax=Planctomycetaceae ... [more]
A0A517RN05_9PLAN3.250e-5275.68Autoinducer 2 sensor kinase/phosphatase LuxQ n=1 T... [more]
A0A517VLP3_9PLAN3.380e-5175.68Autoinducer 2 sensor kinase/phosphatase LuxQ n=1 T... [more]
A0A517VPT1_9PLAN1.340e-5075.68Autoinducer 2 sensor kinase/phosphatase LuxQ n=2 T... [more]
A0A518IJZ7_9PLAN1.880e-5072.97Autoinducer 2 sensor kinase/phosphatase LuxQ n=1 T... [more]
X0WEJ7_9ZZZZ1.410e-4564.86Response regulatory domain-containing protein n=1 ... [more]
A0A3M1QRW9_9BACT5.590e-4470.27Histidine kinase n=1 Tax=Planctomycetes bacterium ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig117645contigM-pyrifera_M_contig117645:75..407 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score154.5
Seed ortholog evalue3e-35
Seed eggNOG ortholog344747.PM8797T_07432
Hectar predicted targeting categoryother localisation
EggNOG free text desc.PhoQ Sensor
EggNOG OGs2IXRW@203682,COG0642@1,COG2205@2
COG Functional cat.T
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
Exons1
Model size333
Cds size333
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815694.069869-CDS-M-pyrifera_M_contig117645:74..4071622815694.069869-CDS-M-pyrifera_M_contig117645:74..407Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117645 75..407 +
1692277525.151526-CDS-M-pyrifera_M_contig117645:74..4071692277525.151526-CDS-M-pyrifera_M_contig117645:74..407Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117645 75..407 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig117645.3644.1prot_M-pyrifera_M_contig117645.3644.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig117645 75..407 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig117645.3644.1

>prot_M-pyrifera_M_contig117645.3644.1 ID=prot_M-pyrifera_M_contig117645.3644.1|Name=mRNA_M-pyrifera_M_contig117645.3644.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=111bp
VLLAEDGPDNQKLISFILKKAGAEVCLAANGEEAYQAAIQEMERGTLFDV
ILMDMQMPILDGYSATRKVRDVGYTGPIISLTANAMEGDRERCLAVGCND
HITKPIDRRQL
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mRNA from alignment at M-pyrifera_M_contig117645:75..407+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig117645.3644.1 ID=mRNA_M-pyrifera_M_contig117645.3644.1|Name=mRNA_M-pyrifera_M_contig117645.3644.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=333bp|location=Sequence derived from alignment at M-pyrifera_M_contig117645:75..407+ (Macrocystis pyrifera P11B4 male)
GTCCTGCTGGCAGAAGACGGCCCGGATAACCAGAAGCTGATCTCCTTTAT CCTCAAGAAAGCGGGCGCTGAAGTGTGTCTGGCCGCAAATGGTGAAGAGG CCTACCAGGCCGCGATCCAGGAAATGGAACGAGGCACCCTCTTCGATGTG ATCCTCATGGACATGCAGATGCCCATTCTCGACGGCTACAGTGCCACACG CAAAGTCCGCGACGTTGGTTACACAGGCCCGATCATCTCACTCACCGCCA ATGCGATGGAAGGCGACCGGGAGAGATGCCTGGCCGTCGGCTGTAACGAT CATATCACCAAACCCATCGATCGTCGGCAACTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig117645:75..407+

>mRNA_M-pyrifera_M_contig117645.3644.1 ID=mRNA_M-pyrifera_M_contig117645.3644.1|Name=mRNA_M-pyrifera_M_contig117645.3644.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=666bp|location=Sequence derived from alignment at M-pyrifera_M_contig117645:75..407+ (Macrocystis pyrifera P11B4 male)
GTCCTGCTGGCAGAAGACGGCCCGGATAACCAGAAGCTGATCTCCTTTAT
CCTCAAGAAAGCGGGCGCTGAAGTGTGTCTGGCCGCAAATGGTGAAGAGG
CCTACCAGGCCGCGATCCAGGAAATGGAACGAGGCACCCTCTTCGATGTG
ATCCTCATGGACATGCAGATGCCCATTCTCGACGGCTACAGTGCCACACG
CAAAGTCCGCGACGTTGGTTACACAGGCCCGATCATCTCACTCACCGCCA
ATGCGATGGAAGGCGACCGGGAGAGATGCCTGGCCGTCGGCTGTAACGAT
CATATCACCAAACCCATCGATCGTCGGCAACTCGTCCTGCTGGCAGAAGA
CGGCCCGGATAACCAGAAGCTGATCTCCTTTATCCTCAAGAAAGCGGGCG
CTGAAGTGTGTCTGGCCGCAAATGGTGAAGAGGCCTACCAGGCCGCGATC
CAGGAAATGGAACGAGGCACCCTCTTCGATGTGATCCTCATGGACATGCA
GATGCCCATTCTCGACGGCTACAGTGCCACACGCAAAGTCCGCGACGTTG
GTTACACAGGCCCGATCATCTCACTCACCGCCAATGCGATGGAAGGCGAC
CGGGAGAGATGCCTGGCCGTCGGCTGTAACGATCATATCACCAAACCCAT
CGATCGTCGGCAACTC
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