mRNA_M-pyrifera_M_contig117597.3638.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig117597.3638.1
Unique NamemRNA_M-pyrifera_M_contig117597.3638.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig117597.3638.1 vs. uniprot
Match: A0A3Q3EAS9_9LABR (Calcium-binding mitochondrial carrier protein SCaMC-3-like n=3 Tax=Labrus bergylta TaxID=56723 RepID=A0A3Q3EAS9_9LABR)

HSP 1 Score: 77.0 bits (188), Expect = 3.570e-15
Identity = 34/50 (68.00%), Postives = 41/50 (82.00%), Query Frame = 1 
Query:    1 MVDCFRQLVRRDGYLSLYRGITPNFMKAIPAISLSYVVYEKMKILLGMGH 150
            M+  FR +V +DG L LYRGITPNF+K IPA+S+SYVVYE MK LLG+GH
Sbjct:  433 MLGQFRHIVSQDGVLGLYRGITPNFLKVIPAVSISYVVYEHMKKLLGVGH 482
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BLAST of mRNA_M-pyrifera_M_contig117597.3638.1 vs. uniprot
Match: A0A2D4KSE1_9SAUR (Uncharacterized protein (Fragment) n=1 Tax=Micrurus paraensis TaxID=1970185 RepID=A0A2D4KSE1_9SAUR)

HSP 1 Score: 70.9 bits (172), Expect = 1.590e-14
Identity = 29/49 (59.18%), Postives = 40/49 (81.63%), Query Frame = 1 
Query:    1 MVDCFRQLVRRDGYLSLYRGITPNFMKAIPAISLSYVVYEKMKILLGMG 147
            MV  F++++ ++G+L LYRGI PNFMK +PA+S+SYVVYEKMK  LG+ 
Sbjct:   67 MVGLFKKIIAKEGFLGLYRGIAPNFMKVLPAVSISYVVYEKMKENLGIA 115
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BLAST of mRNA_M-pyrifera_M_contig117597.3638.1 vs. uniprot
Match: UPI0014257104 (calcium-binding mitochondrial carrier protein SCaMC-1-like n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI0014257104)

HSP 1 Score: 75.1 bits (183), Expect = 1.710e-14
Identity = 32/50 (64.00%), Postives = 39/50 (78.00%), Query Frame = 1 
Query:    1 MVDCFRQLVRRDGYLSLYRGITPNFMKAIPAISLSYVVYEKMKILLGMGH 150
            MV  F+ +  ++G   LYRG+TPNFMK IPA+S+ YVVYEK KILLGMGH
Sbjct:  428 MVSLFKTIYTQEGVRGLYRGLTPNFMKVIPAVSIGYVVYEKTKILLGMGH 477
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BLAST of mRNA_M-pyrifera_M_contig117597.3638.1 vs. uniprot
Match: A0A2G9S477_LITCT (Uncharacterized protein (Fragment) n=1 Tax=Lithobates catesbeianus TaxID=8400 RepID=A0A2G9S477_LITCT)

HSP 1 Score: 70.5 bits (171), Expect = 2.800e-14
Identity = 28/48 (58.33%), Postives = 40/48 (83.33%), Query Frame = 1 
Query:    1 MVDCFRQLVRRDGYLSLYRGITPNFMKAIPAISLSYVVYEKMKILLGM 144
            M   FR+++ ++G+L LYRGI PNF+K +PA+S+SYVVYEKMK+ LG+
Sbjct:   77 MGGLFRKIIAKEGFLGLYRGIAPNFLKVLPAVSISYVVYEKMKVRLGI 124
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BLAST of mRNA_M-pyrifera_M_contig117597.3638.1 vs. uniprot
Match: A0A1L8H352_XENLA (calcium-binding mitochondrial carrier protein SCaMC-3 n=4 Tax=Xenopus TaxID=8353 RepID=A0A1L8H352_XENLA)

HSP 1 Score: 73.9 bits (180), Expect = 4.340e-14
Identity = 33/48 (68.75%), Postives = 39/48 (81.25%), Query Frame = 1 
Query:    1 MVDCFRQLVRRDGYLSLYRGITPNFMKAIPAISLSYVVYEKMKILLGM 144
            MV  FR +V R+G+L LYRGI PNFMK IPA+S+SYVVYE MK LLG+
Sbjct:  417 MVALFRHIVAREGFLGLYRGIAPNFMKVIPAVSISYVVYENMKRLLGV 464
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BLAST of mRNA_M-pyrifera_M_contig117597.3638.1 vs. uniprot
Match: UPI0008545DD1 (calcium-binding mitochondrial carrier protein SCaMC-3-like isoform X3 n=3 Tax=Nanorana parkeri TaxID=125878 RepID=UPI0008545DD1)

HSP 1 Score: 73.6 bits (179), Expect = 5.940e-14
Identity = 33/48 (68.75%), Postives = 39/48 (81.25%), Query Frame = 1 
Query:    1 MVDCFRQLVRRDGYLSLYRGITPNFMKAIPAISLSYVVYEKMKILLGM 144
            MV  FR +V R+G+L LYRGI PNFMK IPA+S+SYVVYE MK LLG+
Sbjct:  419 MVALFRYIVAREGFLGLYRGIAPNFMKVIPAVSISYVVYENMKRLLGV 466
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BLAST of mRNA_M-pyrifera_M_contig117597.3638.1 vs. uniprot
Match: A0A6I8NUT2_ORNAN (Solute carrier family 25 member 24 n=3 Tax=Monotremata TaxID=9255 RepID=A0A6I8NUT2_ORNAN)

HSP 1 Score: 73.2 bits (178), Expect = 8.040e-14
Identity = 31/49 (63.27%), Postives = 41/49 (83.67%), Query Frame = 1 
Query:    1 MVDCFRQLVRRDGYLSLYRGITPNFMKAIPAISLSYVVYEKMKILLGMG 147
            MV  F++++R++G L LYRGITPNFMK +PA+S+SYVVYEKMK  LG+ 
Sbjct:  404 MVGLFQRIIRKEGVLGLYRGITPNFMKVLPAVSISYVVYEKMKQNLGIA 452
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BLAST of mRNA_M-pyrifera_M_contig117597.3638.1 vs. uniprot
Match: UPI001964832A (calcium-binding mitochondrial carrier protein SCaMC-3 n=1 Tax=Polypterus senegalus TaxID=55291 RepID=UPI001964832A)

HSP 1 Score: 73.2 bits (178), Expect = 8.170e-14
Identity = 32/48 (66.67%), Postives = 38/48 (79.17%), Query Frame = 1 
Query:    1 MVDCFRQLVRRDGYLSLYRGITPNFMKAIPAISLSYVVYEKMKILLGM 144
            MV  FRQ+V R+G   LYRGI PNFMK IPA+S+SYVVYE MK+ LG+
Sbjct:  431 MVGLFRQIVSREGVFGLYRGIAPNFMKVIPAVSISYVVYENMKLALGV 478
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BLAST of mRNA_M-pyrifera_M_contig117597.3638.1 vs. uniprot
Match: H2ZUG3_LATCH (Uncharacterized protein n=1 Tax=Latimeria chalumnae TaxID=7897 RepID=H2ZUG3_LATCH)

HSP 1 Score: 71.6 bits (174), Expect = 1.830e-13
Identity = 30/47 (63.83%), Postives = 38/47 (80.85%), Query Frame = 1 
Query:    1 MVDCFRQLVRRDGYLSLYRGITPNFMKAIPAISLSYVVYEKMKILLG 141
            M   F+ ++ R+G+L LYRGI PNFMK IPA+S+SYVVYE MKI+LG
Sbjct:  263 MSGLFKHIISREGFLGLYRGIAPNFMKVIPAVSISYVVYENMKIVLG 309
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BLAST of mRNA_M-pyrifera_M_contig117597.3638.1 vs. uniprot
Match: A0A6P7Y1F2_9AMPH (calcium-binding mitochondrial carrier protein SCaMC-1 n=2 Tax=Gymnophiona TaxID=8445 RepID=A0A6P7Y1F2_9AMPH)

HSP 1 Score: 71.2 bits (173), Expect = 3.910e-13
Identity = 27/49 (55.10%), Postives = 40/49 (81.63%), Query Frame = 1 
Query:    1 MVDCFRQLVRRDGYLSLYRGITPNFMKAIPAISLSYVVYEKMKILLGMG 147
            MV  F++++ ++G+  LYRGI PNFMK +PA+S+SY+VYEKMK+ LG+ 
Sbjct:  442 MVALFKRIIEKEGFFGLYRGIAPNFMKVLPAVSISYIVYEKMKLRLGVA 490
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig117597.3638.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3Q3EAS9_9LABR3.570e-1568.00Calcium-binding mitochondrial carrier protein SCaM... [more]
A0A2D4KSE1_9SAUR1.590e-1459.18Uncharacterized protein (Fragment) n=1 Tax=Micruru... [more]
UPI00142571041.710e-1464.00calcium-binding mitochondrial carrier protein SCaM... [more]
A0A2G9S477_LITCT2.800e-1458.33Uncharacterized protein (Fragment) n=1 Tax=Lithoba... [more]
A0A1L8H352_XENLA4.340e-1468.75calcium-binding mitochondrial carrier protein SCaM... [more]
UPI0008545DD15.940e-1468.75calcium-binding mitochondrial carrier protein SCaM... [more]
A0A6I8NUT2_ORNAN8.040e-1463.27Solute carrier family 25 member 24 n=3 Tax=Monotre... [more]
UPI001964832A8.170e-1466.67calcium-binding mitochondrial carrier protein SCaM... [more]
H2ZUG3_LATCH1.830e-1363.83Uncharacterized protein n=1 Tax=Latimeria chalumna... [more]
A0A6P7Y1F2_9AMPH3.910e-1355.10calcium-binding mitochondrial carrier protein SCaM... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig117597contigM-pyrifera_M_contig117597:11..169 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score75.1
Seed ortholog evalue1.1e-11
Seed eggNOG ortholog8364.ENSXETP00000047307
Preferred nameSLC25A23
KEGG koko:K14684
KEGG TC2.A.29.23
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000295,GO:0002082,GO:0003674,GO:0005215,GO:0005346,GO:0005347,GO:0005488,GO:0005509,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006140,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006820,GO:0006839,GO:0006851,GO:0006855,GO:0006862,GO:0006950,GO:0006979,GO:0008150,GO:0008509,GO:0008514,GO:0009987,GO:0010035,GO:0010038,GO:0010941,GO:0015075,GO:0015215,GO:0015216,GO:0015217,GO:0015238,GO:0015605,GO:0015711,GO:0015748,GO:0015865,GO:0015866,GO:0015867,GO:0015868,GO:0015893,GO:0015931,GO:0015932,GO:0016020,GO:0016021,GO:0019219,GO:0019220,GO:0019222,GO:0019866,GO:0022857,GO:0030001,GO:0031090,GO:0031224,GO:0031323,GO:0031966,GO:0031967,GO:0031975,GO:0032879,GO:0033554,GO:0034220,GO:0034599,GO:0036444,GO:0042221,GO:0042325,GO:0042493,GO:0042592,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043457,GO:0043467,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046872,GO:0048878,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051174,GO:0051179,GO:0051234,GO:0051282,GO:0051503,GO:0051592,GO:0051716,GO:0055085,GO:0060401,GO:0062012,GO:0065007,GO:0065008,GO:0070509,GO:0070588,GO:0070838,GO:0070887,GO:0071241,GO:0071248,GO:0071277,GO:0071702,GO:0071705,GO:0072511,GO:0080090,GO:0097274,GO:0098655,GO:0098656,GO:0098660,GO:0098662,GO:1900542,GO:1901264,GO:1901505,GO:1901679,GO:1903578,GO:1990542
EggNOG free text desc.Belongs to the mitochondrial carrier (TC 2.A.29) family
EggNOG OGs38B6F@33154,3BD3M@33208,3CS5J@33213,481B5@7711,49451@7742,KOG0036@1,KOG0036@2759
COG Functional cat.C
Best tax levelVertebrata
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Exons1
Model size159
Cds size159
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815693.6368134-CDS-M-pyrifera_M_contig117597:10..1691622815693.6368134-CDS-M-pyrifera_M_contig117597:10..169Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117597 11..169 +
1692277524.8590555-CDS-M-pyrifera_M_contig117597:10..1691692277524.8590555-CDS-M-pyrifera_M_contig117597:10..169Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117597 11..169 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig117597.3638.1prot_M-pyrifera_M_contig117597.3638.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig117597 11..169 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig117597.3638.1

>prot_M-pyrifera_M_contig117597.3638.1 ID=prot_M-pyrifera_M_contig117597.3638.1|Name=mRNA_M-pyrifera_M_contig117597.3638.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=53bp
MVDCFRQLVRRDGYLSLYRGITPNFMKAIPAISLSYVVYEKMKILLGMGH
DR*
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mRNA from alignment at M-pyrifera_M_contig117597:11..169+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig117597.3638.1 ID=mRNA_M-pyrifera_M_contig117597.3638.1|Name=mRNA_M-pyrifera_M_contig117597.3638.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=159bp|location=Sequence derived from alignment at M-pyrifera_M_contig117597:11..169+ (Macrocystis pyrifera P11B4 male)
ATGGTGGACTGCTTCCGCCAGCTGGTGAGGCGCGACGGCTACCTCTCTCT
GTACAGGGGAATTACGCCCAACTTCATGAAGGCCATTCCTGCCATCAGCC
TCAGCTACGTCGTCTACGAGAAGATGAAGATCCTCCTGGGCATGGGCCAC
GACCGTTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig117597:11..169+

>mRNA_M-pyrifera_M_contig117597.3638.1 ID=mRNA_M-pyrifera_M_contig117597.3638.1|Name=mRNA_M-pyrifera_M_contig117597.3638.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=318bp|location=Sequence derived from alignment at M-pyrifera_M_contig117597:11..169+ (Macrocystis pyrifera P11B4 male)
ATGGTGGACTGCTTCCGCCAGCTGGTGAGGCGCGACGGCTACCTCTCTCT
GTACAGGGGAATTACGCCCAACTTCATGAAGGCCATTCCTGCCATCAGCC
TCAGCTACGTCGTCTACGAGAAGATGAAGATCCTCCTGGGCATGGGCCAC
GACCGTTAGATGGTGGACTGCTTCCGCCAGCTGGTGAGGCGCGACGGCTA
CCTCTCTCTGTACAGGGGAATTACGCCCAACTTCATGAAGGCCATTCCTG
CCATCAGCCTCAGCTACGTCGTCTACGAGAAGATGAAGATCCTCCTGGGC
ATGGGCCACGACCGTTAG
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