mRNA_M-pyrifera_M_contig11755.3633.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig11755.3633.1
Unique NamemRNA_M-pyrifera_M_contig11755.3633.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11755.3633.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig11755contigM-pyrifera_M_contig11755:1325..1921 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size507
Cds size507
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815693.469111-CDS-M-pyrifera_M_contig11755:1324..15081622815693.469111-CDS-M-pyrifera_M_contig11755:1324..1508Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11755 1325..1508 +
1692277524.7834666-CDS-M-pyrifera_M_contig11755:1324..15081692277524.7834666-CDS-M-pyrifera_M_contig11755:1324..1508Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11755 1325..1508 +
1622815693.481951-CDS-M-pyrifera_M_contig11755:1598..19211622815693.481951-CDS-M-pyrifera_M_contig11755:1598..1921Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11755 1599..1921 +
1692277524.7942321-CDS-M-pyrifera_M_contig11755:1598..19211692277524.7942321-CDS-M-pyrifera_M_contig11755:1598..1921Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11755 1599..1921 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig11755.3633.1prot_M-pyrifera_M_contig11755.3633.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig11755 1325..1921 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig11755.3633.1

>prot_M-pyrifera_M_contig11755.3633.1 ID=prot_M-pyrifera_M_contig11755.3633.1|Name=mRNA_M-pyrifera_M_contig11755.3633.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=169bp
VPNSTRGARPPSPAEGARRLILPPRLGPRRGPPPCCPQCGLTRFPRVPPP
PPLLRGGMGGRSPPPSRPGMGRGPRGAMRGGYGRGRGRGGRCLCNTMGPM
RGIGGRPLPRPGGMVGLPSGRGGRGRGVGAGPGRSCDQSSAVPLSCARPE
ARPEDEGESAQPARPISRS
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mRNA from alignment at M-pyrifera_M_contig11755:1325..1921+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig11755.3633.1 ID=mRNA_M-pyrifera_M_contig11755.3633.1|Name=mRNA_M-pyrifera_M_contig11755.3633.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=597bp|location=Sequence derived from alignment at M-pyrifera_M_contig11755:1325..1921+ (Macrocystis pyrifera P11B4 male)
GTGCCCAACAGTACCAGAGGCGCTCGTCCGCCCTCTCCGGCTGAAGGAGC
AAGACGGCTGATACTGCCACCGCGGCTTGGCCCCAGGAGAGGGCCACCAC
CATGCTGCCCACAATGCGGATTAACAAGATTCCCGAGGGTACCGCCGCCA
CCGCCGCTGCTCCGAGGGGGGATGGGAGGCAGGAGTTATCCCCCCAGACC
ATTCATGGGGCCCCGTAGACATTTTCCCGGCAGAGGAATGCCTCCCCGAC
CTGGGATGTGGTGGGTCGGCCGAGGCCCCCCGCCATCACGCCCTGGCATG
GGCAGAGGGCCGAGGGGGGCCATGCGCGGTGGATATGGTAGAGGGCGGGG
ACGTGGGGGGAGATGCTTATGTAACACCATGGGGCCGATGAGGGGGATAG
GTGGACGCCCGCTGCCACGACCGGGTGGGATGGTGGGGCTCCCATCTGGT
CGCGGAGGGAGAGGTCGCGGGGTAGGGGCGGGGCCGGGCCGGAGTTGTGA
CCAGTCAAGCGCGGTACCGCTGTCTTGCGCAAGACCCGAAGCGAGACCTG
AAGATGAGGGAGAATCTGCTCAACCTGCTCGTCCTATTTCCCGATCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig11755:1325..1921+

>mRNA_M-pyrifera_M_contig11755.3633.1 ID=mRNA_M-pyrifera_M_contig11755.3633.1|Name=mRNA_M-pyrifera_M_contig11755.3633.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1014bp|location=Sequence derived from alignment at M-pyrifera_M_contig11755:1325..1921+ (Macrocystis pyrifera P11B4 male)
GTGCCCAACAGTACCAGAGGCGCTCGTCCGCCCTCTCCGGCTGAAGGAGC
AAGACGGCTGATACTGCCACCGCGGCTTGGCCCCAGGAGAGGGCCACCAC
CATGCTGCCCACAATGCGGATTAACAAGATTCCCGAGGGTACCGCCGCCA
CCGCCGCTGCTCCGAGGGGGGATGGGAGGCAGGAGTGCCCAACAGTACCA
GAGGCGCTCGTCCGCCCTCTCCGGCTGAAGGAGCAAGACGGCTGATACTG
CCACCGCGGCTTGGCCCCAGGAGAGGGCCACCACCATGCTGCCCACAATG
CGGATTAACAAGATTCCCGAGGGTACCGCCGCCACCGCCGCTGCTCCGAG
GGGGGATGGGAGGCAGGAGCCCCCCGCCATCACGCCCTGGCATGGGCAGA
GGGCCGAGGGGGGCCATGCGCGGTGGATATGGTAGAGGGCGGGGACGTGG
GGGGAGATGCTTATGTAACACCATGGGGCCGATGAGGGGGATAGGTGGAC
GCCCGCTGCCACGACCGGGTGGGATGGTGGGGCTCCCATCTGGTCGCGGA
GGGAGAGGTCGCGGGGTAGGGGCGGGGCCGGGCCGGAGTTGTGACCAGTC
AAGCGCGGTACCGCTGTCTTGCGCAAGACCCGAAGCGAGACCTGAAGATG
AGGGAGAATCTGCTCAACCTGCTCGTCCTATTTCCCGATCGGCCCCCCGC
CATCACGCCCTGGCATGGGCAGAGGGCCGAGGGGGGCCATGCGCGGTGGA
TATGGTAGAGGGCGGGGACGTGGGGGGAGATGCTTATGTAACACCATGGG
GCCGATGAGGGGGATAGGTGGACGCCCGCTGCCACGACCGGGTGGGATGG
TGGGGCTCCCATCTGGTCGCGGAGGGAGAGGTCGCGGGGTAGGGGCGGGG
CCGGGCCGGAGTTGTGACCAGTCAAGCGCGGTACCGCTGTCTTGCGCAAG
ACCCGAAGCGAGACCTGAAGATGAGGGAGAATCTGCTCAACCTGCTCGTC
CTATTTCCCGATCG
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