mRNA_M-pyrifera_M_contig117467.3611.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig117467.3611.1
Unique NamemRNA_M-pyrifera_M_contig117467.3611.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig117467.3611.1 vs. uniprot
Match: A0A2E3MIB3_9GAMM (Type IV pilus modification protein PilV n=1 Tax=Legionellales bacterium TaxID=2026754 RepID=A0A2E3MIB3_9GAMM)

HSP 1 Score: 79.0 bits (193), Expect = 4.660e-17
Identity = 40/55 (72.73%), Postives = 49/55 (89.09%), Query Frame = 1
Query:   37 QSGFSLIEVLVAIVILSIGLLGIAGLQLTGLRQVHNANLLFQAVIQDNDISDRIR 201
            Q GFSL+EVLVA+V+LS+GLLGIAGLQLTGLR  HNANL + AV+Q ND++DR+R
Sbjct:    6 QQGFSLLEVLVAVVVLSVGLLGIAGLQLTGLRYSHNANLRYIAVLQANDMADRLR 60          
BLAST of mRNA_M-pyrifera_M_contig117467.3611.1 vs. uniprot
Match: S5TTT4_9GAMM (Type IV fimbrial biogenesis protein PilV n=2 Tax=Cycloclasticus TaxID=34067 RepID=S5TTT4_9GAMM)

HSP 1 Score: 65.5 bits (158), Expect = 7.420e-12
Identity = 35/56 (62.50%), Postives = 45/56 (80.36%), Query Frame = 1
Query:   34 RQSGFSLIEVLVAIVILSIGLLGIAGLQLTGLRQVHNANLLFQAVIQDNDISDRIR 201
            RQSGFSLIEV+VA+ +L+IGLLG+AGLQ+T L+  H+A L  +AVI   DI DR+R
Sbjct:   10 RQSGFSLIEVMVAVFVLAIGLLGLAGLQVTSLKSNHSAQLRTEAVIHVYDIIDRMR 65          
BLAST of mRNA_M-pyrifera_M_contig117467.3611.1 vs. uniprot
Match: A0A351SB68_9GAMM (Type IV pilus modification protein PilV (Fragment) n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A351SB68_9GAMM)

HSP 1 Score: 63.5 bits (153), Expect = 1.480e-11
Identity = 34/55 (61.82%), Postives = 43/55 (78.18%), Query Frame = 1
Query:   37 QSGFSLIEVLVAIVILSIGLLGIAGLQLTGLRQVHNANLLFQAVIQDNDISDRIR 201
              GF+L+EVL+A+VILS+GLLG+AGLQ TGLR  H+A L  QA +   DI+DRIR
Sbjct:    1 MKGFTLLEVLIALVILSVGLLGLAGLQTTGLRNNHSAYLRSQATLLAYDITDRIR 55          
BLAST of mRNA_M-pyrifera_M_contig117467.3611.1 vs. uniprot
Match: UPI0003B4621C (type IV pilus modification protein PilV n=1 Tax=Methylohalobius crimeensis TaxID=244365 RepID=UPI0003B4621C)

HSP 1 Score: 65.1 bits (157), Expect = 1.870e-11
Identity = 32/57 (56.14%), Postives = 46/57 (80.70%), Query Frame = 1
Query:   31 KRQSGFSLIEVLVAIVILSIGLLGIAGLQLTGLRQVHNANLLFQAVIQDNDISDRIR 201
            +R++GF+LIE+L+A+++L+IGLLG+AGLQ TGL   H+ANL  QA +   D+ DRIR
Sbjct:    2 RREAGFTLIEILIAVLVLAIGLLGLAGLQTTGLHSNHSANLRTQATLLAYDMIDRIR 58          
BLAST of mRNA_M-pyrifera_M_contig117467.3611.1 vs. uniprot
Match: A0A833IPB3_9GAMM (Type IV pilus modification protein PilV n=1 Tax=Alkalilimnicola sp. S0819 TaxID=2613922 RepID=A0A833IPB3_9GAMM)

HSP 1 Score: 64.7 bits (156), Expect = 2.150e-11
Identity = 34/57 (59.65%), Postives = 44/57 (77.19%), Query Frame = 1
Query:   31 KRQSGFSLIEVLVAIVILSIGLLGIAGLQLTGLRQVHNANLLFQAVIQDNDISDRIR 201
            KRQ G SLIEVLVA+++LS+GLLG+AGLQ   L+  H+A L  QA I  ND++DR+R
Sbjct:    6 KRQQGLSLIEVLVAVLVLSVGLLGLAGLQAASLKNNHSAYLRSQATILANDMADRMR 62          
BLAST of mRNA_M-pyrifera_M_contig117467.3611.1 vs. uniprot
Match: UPI001459F4A8 (type IV pilus modification protein PilV n=1 Tax=Azoarcus taiwanensis TaxID=666964 RepID=UPI001459F4A8)

HSP 1 Score: 63.5 bits (153), Expect = 4.340e-11
Identity = 35/55 (63.64%), Postives = 45/55 (81.82%), Query Frame = 1
Query:   37 QSGFSLIEVLVAIVILSIGLLGIAGLQLTGLRQVHNANLLFQAVIQDNDISDRIR 201
            +SG +LIEVLVAIV+LSIGLLG+AGLQ+TGL+  H+A L  QA +   D+SDR+R
Sbjct:   15 ESGATLIEVLVAIVVLSIGLLGLAGLQMTGLQSNHSAYLRSQATLLAYDLSDRMR 69          
BLAST of mRNA_M-pyrifera_M_contig117467.3611.1 vs. uniprot
Match: A0A349H831_9GAMM (Type IV pilus modification protein PilV n=1 Tax=Candidatus Competibacteraceae bacterium TaxID=2053538 RepID=A0A349H831_9GAMM)

HSP 1 Score: 63.9 bits (154), Expect = 4.860e-11
Identity = 33/62 (53.23%), Postives = 48/62 (77.42%), Query Frame = 1
Query:   16 SKPSIKRQSGFSLIEVLVAIVILSIGLLGIAGLQLTGLRQVHNANLLFQAVIQDNDISDRIR 201
            +KPS K  +GF+L+EVLVA+V+LS+GLLG+A LQ+ GLR  H+A L  QA +   +++DR+R
Sbjct:    5 NKPSGKNSAGFTLLEVLVALVVLSVGLLGLASLQVNGLRFNHSAYLRTQATLLAEELADRMR 66          
BLAST of mRNA_M-pyrifera_M_contig117467.3611.1 vs. uniprot
Match: A0A317CLP1_9GAMM (Type IV pilus modification protein PilV n=2 Tax=Leucothrix arctica TaxID=1481894 RepID=A0A317CLP1_9GAMM)

HSP 1 Score: 63.5 bits (153), Expect = 7.840e-11
Identity = 33/62 (53.23%), Postives = 47/62 (75.81%), Query Frame = 1
Query:   16 SKPSIKRQSGFSLIEVLVAIVILSIGLLGIAGLQLTGLRQVHNANLLFQAVIQDNDISDRIR 201
            SK  +K QSGFSLIE+L+++V+LSIGLLG+ GLQLT L+  +NA+    A I   +++DR+R
Sbjct:    4 SKHILKVQSGFSLIEILISLVVLSIGLLGLGGLQLTSLKSANNAHFRTAASIAATELADRMR 65          
BLAST of mRNA_M-pyrifera_M_contig117467.3611.1 vs. uniprot
Match: A0A6C1MUU2_9GAMM (Type IV pilus modification protein PilV n=1 Tax=Halomonadaceae bacterium TaxID=2026746 RepID=A0A6C1MUU2_9GAMM)

HSP 1 Score: 62.8 bits (151), Expect = 8.300e-11
Identity = 31/57 (54.39%), Postives = 46/57 (80.70%), Query Frame = 1
Query:   31 KRQSGFSLIEVLVAIVILSIGLLGIAGLQLTGLRQVHNANLLFQAVIQDNDISDRIR 201
            ++Q+GFSL+EV++A+VIL+IGLLG+AG+QL  L+Q  NA L  QA +   D++DR+R
Sbjct:   22 QQQTGFSLLEVMIALVILTIGLLGVAGVQLLSLQQTGNAQLRSQATMVAQDLADRVR 78          
BLAST of mRNA_M-pyrifera_M_contig117467.3611.1 vs. uniprot
Match: A4BTT4_9GAMM (Putative pre-pilin leader sequence n=1 Tax=Nitrococcus mobilis Nb-231 TaxID=314278 RepID=A4BTT4_9GAMM)

HSP 1 Score: 63.2 bits (152), Expect = 8.800e-11
Identity = 33/57 (57.89%), Postives = 44/57 (77.19%), Query Frame = 1
Query:   31 KRQSGFSLIEVLVAIVILSIGLLGIAGLQLTGLRQVHNANLLFQAVIQDNDISDRIR 201
            +   GF+L+EVL+A++ILS+GLLG+AGLQLTGLR  H+A L  QA I   D+ DR+R
Sbjct:   16 RPSGGFTLLEVLIALLILSVGLLGVAGLQLTGLRSNHSAYLRSQATILAYDLLDRLR 72          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig117467.3611.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E3MIB3_9GAMM4.660e-1772.73Type IV pilus modification protein PilV n=1 Tax=Le... [more]
S5TTT4_9GAMM7.420e-1262.50Type IV fimbrial biogenesis protein PilV n=2 Tax=C... [more]
A0A351SB68_9GAMM1.480e-1161.82Type IV pilus modification protein PilV (Fragment)... [more]
UPI0003B4621C1.870e-1156.14type IV pilus modification protein PilV n=1 Tax=Me... [more]
A0A833IPB3_9GAMM2.150e-1159.65Type IV pilus modification protein PilV n=1 Tax=Al... [more]
UPI001459F4A84.340e-1163.64type IV pilus modification protein PilV n=1 Tax=Az... [more]
A0A349H831_9GAMM4.860e-1153.23Type IV pilus modification protein PilV n=1 Tax=Ca... [more]
A0A317CLP1_9GAMM7.840e-1153.23Type IV pilus modification protein PilV n=2 Tax=Le... [more]
A0A6C1MUU2_9GAMM8.300e-1154.39Type IV pilus modification protein PilV n=1 Tax=Ha... [more]
A4BTT4_9GAMM8.800e-1157.89Putative pre-pilin leader sequence n=1 Tax=Nitroco... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig117467contigM-pyrifera_M_contig117467:354..554 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score65.1
Seed ortholog evalue1.4e-08
Seed eggNOG ortholog1198232.CYCME_0071
Preferred namepilV
KEGG koko:K02671
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.Pfam:N_methyl_2
EggNOG OGs1N6TG@1224,1SC9Z@1236,462UH@72273,COG4967@1,COG4967@2
COG Functional cat.NU
Best tax levelThiotrichales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02035,ko02044
Exons1
Model size201
Cds size201
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815692.5155628-CDS-M-pyrifera_M_contig117467:353..5541622815692.5155628-CDS-M-pyrifera_M_contig117467:353..554Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117467 354..554 +
1692277524.377094-CDS-M-pyrifera_M_contig117467:353..5541692277524.377094-CDS-M-pyrifera_M_contig117467:353..554Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117467 354..554 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig117467.3611.1prot_M-pyrifera_M_contig117467.3611.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig117467 354..554 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig117467.3611.1

>prot_M-pyrifera_M_contig117467.3611.1 ID=prot_M-pyrifera_M_contig117467.3611.1|Name=mRNA_M-pyrifera_M_contig117467.3611.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=67bp
MWFSYSKPSIKRQSGFSLIEVLVAIVILSIGLLGIAGLQLTGLRQVHNAN
LLFQAVIQDNDISDRIR
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mRNA from alignment at M-pyrifera_M_contig117467:354..554+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig117467.3611.1 ID=mRNA_M-pyrifera_M_contig117467.3611.1|Name=mRNA_M-pyrifera_M_contig117467.3611.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=201bp|location=Sequence derived from alignment at M-pyrifera_M_contig117467:354..554+ (Macrocystis pyrifera P11B4 male)
ATGTGGTTTTCTTACAGCAAGCCATCCATTAAAAGGCAATCCGGTTTCTC CTTGATTGAGGTGCTGGTTGCTATTGTCATTTTATCTATAGGGCTGTTGG GTATTGCCGGCCTTCAGCTCACGGGGCTACGGCAAGTCCACAATGCTAAT TTACTGTTTCAAGCCGTTATTCAGGATAACGATATTTCTGACAGGATTCG A
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig117467:354..554+

>mRNA_M-pyrifera_M_contig117467.3611.1 ID=mRNA_M-pyrifera_M_contig117467.3611.1|Name=mRNA_M-pyrifera_M_contig117467.3611.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=402bp|location=Sequence derived from alignment at M-pyrifera_M_contig117467:354..554+ (Macrocystis pyrifera P11B4 male)
ATGTGGTTTTCTTACAGCAAGCCATCCATTAAAAGGCAATCCGGTTTCTC
CTTGATTGAGGTGCTGGTTGCTATTGTCATTTTATCTATAGGGCTGTTGG
GTATTGCCGGCCTTCAGCTCACGGGGCTACGGCAAGTCCACAATGCTAAT
TTACTGTTTCAAGCCGTTATTCAGGATAACGATATTTCTGACAGGATTCG
AATGTGGTTTTCTTACAGCAAGCCATCCATTAAAAGGCAATCCGGTTTCT
CCTTGATTGAGGTGCTGGTTGCTATTGTCATTTTATCTATAGGGCTGTTG
GGTATTGCCGGCCTTCAGCTCACGGGGCTACGGCAAGTCCACAATGCTAA
TTTACTGTTTCAAGCCGTTATTCAGGATAACGATATTTCTGACAGGATTC
GA
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