mRNA_M-pyrifera_M_contig117458.3609.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig117458.3609.1
Unique NamemRNA_M-pyrifera_M_contig117458.3609.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig117458.3609.1 vs. uniprot
Match: A0A2E2C3A5_9PLAN (PDZ domain-containing protein n=2 Tax=Planctomycetaceae TaxID=126 RepID=A0A2E2C3A5_9PLAN)

HSP 1 Score: 316 bits (810), Expect = 4.340e-102
Identity = 166/183 (90.71%), Postives = 175/183 (95.63%), Query Frame = 1
Query:    1 MSQLQVYHSQTDTVVSALLFVVIMLILLTAVFLSGCTTLSHAAEYDPYQNHFNQNGSGQSFERDPFNAGRDSYTPSYSNGRRHQRYRPVTDENRFDEYELKLKQLLSEEAQTYERPQNQYNSFTRDRFDASQRRQTRENFDDRIDSQKLRELIRELQQRSMPQYDRDRYETEFPKQYPVDPDQ 549
            M++ Q  +SQT+T+ SA LFV  M+ILLTAVFLSGCTTLSHAAEYDPYQNHFNQNGSGQSFERDPFNAGRDSYTPSYSNGRRHQRYRPVTDENRFDEYELKLKQLLSEEAQTYERPQNQYNSF+RDRFD+ QRRQ+RENFDDRIDSQKLRELIRELQQRSMPQYDRDRYETEFPKQYPVDPDQ
Sbjct:    1 MNRSQFNYSQTETINSARLFVWSMVILLTAVFLSGCTTLSHAAEYDPYQNHFNQNGSGQSFERDPFNAGRDSYTPSYSNGRRHQRYRPVTDENRFDEYELKLKQLLSEEAQTYERPQNQYNSFSRDRFDSGQRRQSRENFDDRIDSQKLRELIRELQQRSMPQYDRDRYETEFPKQYPVDPDQ 183          
BLAST of mRNA_M-pyrifera_M_contig117458.3609.1 vs. uniprot
Match: A0A517VMZ3_9PLAN (Putative CtpA-like serine protease n=8 Tax=Gimesia TaxID=1649453 RepID=A0A517VMZ3_9PLAN)

HSP 1 Score: 261 bits (667), Expect = 8.500e-81
Identity = 140/183 (76.50%), Postives = 158/183 (86.34%), Query Frame = 1
Query:    1 MSQLQVYHSQTDTVVSALLFVVIMLILLTAVFLSGCTTLSHAAEYDPYQNHFNQNGSGQSFERDPFNAGRDSYTPSYSNGRRHQRYRPVTDENRFDEYELKLKQLLSEEAQTYERPQNQYNSFTRDRFDASQRRQTRENFDDRIDSQKLRELIRELQQRSMPQYDRDRYETEFPKQYPVDPDQ 549
            M++ Q  ++QT+T+ SA LFV  ++ILLTAVFLSGCTTLSHAAEYDPYQ  FNQN SG +FERD  N G+DS  PSY N RRHQR+RPV+DENRFD+YEL+LKQLLSEE+Q  ERP NQYNSF+ DRFDA QRRQ+RE FDD IDSQKLRELIRELQQRSMPQYDRDRYETEFPKQYPVDP+Q
Sbjct:    1 MNRSQFNYTQTETINSARLFVWSIVILLTAVFLSGCTTLSHAAEYDPYQKQFNQNDSGHAFERDRLNYGQDSLAPSYKNSRRHQRFRPVSDENRFDDYELRLKQLLSEESQINERPGNQYNSFSGDRFDAGQRRQSRERFDDNIDSQKLRELIRELQQRSMPQYDRDRYETEFPKQYPVDPNQ 183          
BLAST of mRNA_M-pyrifera_M_contig117458.3609.1 vs. uniprot
Match: A0A517RPI2_9PLAN (Putative CtpA-like serine protease n=2 Tax=Gimesia TaxID=1649453 RepID=A0A517RPI2_9PLAN)

HSP 1 Score: 159 bits (401), Expect = 3.510e-42
Identity = 96/183 (52.46%), Postives = 131/183 (71.58%), Query Frame = 1
Query:    1 MSQLQVYHSQTDTVVSALLFVVIMLILLTAVFLSGCTTLSHAAEYDPYQNHFNQNGSGQSFERDPFNAGRDSYTPSYSNGRRHQRYRPVTDENRFDEYELKLKQLLSEEAQTYERPQNQYNSFTRDRFDASQRRQTRENFDDRIDSQKLRELIRELQQRSMPQYDRDRYETEFPKQYPVDPDQ 549
            M++ Q   SQ +T+ SA L V  M+IL+TAVFLSGCTTL+HA EY+ Y++ F+     +S++R+   +  D + PSYS  RRHQR RPV DE+  D+Y+ KL++LL    Q  +R +N+Y +  R+R  +  RRQT + F+D  DSQKLRELIREL+QRS+PQYDRDRYET+FP Q P+DP+Q
Sbjct:    1 MNRSQFKISQNETINSARLVVWGMVILMTAVFLSGCTTLAHADEYNSYRDDFDH----RSYDRNNSRSREDLFPPSYSRDRRHQRQRPVRDESGADDYQSKLERLLYGNDQQLDRLRNRYENEHRERQSSFPRRQTPDTFEDDYDSQKLRELIRELRQRSLPQYDRDRYETKFPNQTPIDPNQ 179          
BLAST of mRNA_M-pyrifera_M_contig117458.3609.1 vs. uniprot
Match: A0A517VNY0_9PLAN (Putative CtpA-like serine protease n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517VNY0_9PLAN)

HSP 1 Score: 152 bits (385), Expect = 6.290e-40
Identity = 95/184 (51.63%), Postives = 130/184 (70.65%), Query Frame = 1
Query:    1 MSQLQVYHSQTDTVVSALLFVVIMLILLTAVFLSGCTTLSHAAEYDPYQNHFNQNGSGQSFERDPFNAGRDSYTP-SYSNGRRHQRYRPVTDENRFDEYELKLKQLLSEEAQTYERPQNQYNSFTRDRFDASQRRQTRENFDDRIDSQKLRELIRELQQRSMPQYDRDRYETEFPKQYPVDPDQ 549
            M++ Q  +SQ +TV SA LFV  M++L+TAVFLSGC TLSHAAE + YQ    Q  + +SF+R+ F    + + P SYS  RR+QR  PV   +RFDEYE+KL++LLS   Q +++  ++Y    R+R D   RRQ R +F+D  +SQKLRELIREL++R +PQYDR++YETEFP  YP+DP+Q
Sbjct:    1 MNRSQFKNSQNETVNSARLFVWGMVVLMTAVFLSGCATLSHAAENESYQEDVYQCINNRSFDRN-FGHSSEGFLPASYSEDRRYQRQHPVGSSSRFDEYEIKLRRLLSGNDQRFDQSHDRY---PRERSDFRSRRQPRNSFEDNSNSQKLRELIRELRERVLPQYDREQYETEFPNNYPIDPNQ 180          
BLAST of mRNA_M-pyrifera_M_contig117458.3609.1 vs. uniprot
Match: A0A518AFL4_9PLAN (Putative CtpA-like serine protease n=6 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518AFL4_9PLAN)

HSP 1 Score: 133 bits (335), Expect = 5.910e-33
Identity = 90/198 (45.45%), Postives = 125/198 (63.13%), Query Frame = 1
Query:    1 MSQLQVYHSQTDTVVSALLFVVIMLILLTAVFLSGCTTLSHAAEYDPYQNHFNQNGSGQSFERDPFNAGRDSYTPSYSN---------------GRRHQRYRPVTDENRFDEYELKLKQLLSEEAQTYERPQNQYNSFTRDRFDASQRRQTRENFDDRIDSQKLRELIRELQQRSMPQYDRDRYETEFPKQYPVDPDQ 549
            M++ Q   +QT+T+ SA L V  M+ILLTAVFLSGC T SHAAEY P+Q +  +N +G S +    N  R   TPSYS+                  H+R RPV++E   D+YE KL+QLLS +  +  R +NQ+      +  +S  R+ R++F +  D+QKLRELIRELQQ+++PQYDR+RY+T FP Q P+DP+Q
Sbjct:    1 MNRSQCKSNQTETINSARLVVWGMVILLTAVFLSGCATFSHAAEYTPFQGNDYRNNNGSSLDYQQDNRYR---TPSYSDYAPIPRHRSDADXXXXXXHRRNRPVSNELSMDDYEAKLRQLLSGDDYSIGRSRNQFRDQAPQQNYSSPDRRYRDSFQNDFDNQKLRELIRELQQQTLPQYDRERYDTRFPTQVPLDPNQ 195          
BLAST of mRNA_M-pyrifera_M_contig117458.3609.1 vs. uniprot
Match: A0A2E7KCI1_9PLAN (PDZ domain-containing protein n=10 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KCI1_9PLAN)

HSP 1 Score: 123 bits (309), Expect = 2.100e-29
Identity = 85/196 (43.37%), Postives = 121/196 (61.73%), Query Frame = 1
Query:    1 MSQLQVYHSQTDTVVSALLFVVIMLILLTAVFLSGCTTLSHAAEYDPYQNHFNQNGSGQSFERDPFNAGRDSYTPSYSNGRRHQ------------RYRPVTDENRFDEYELKLKQLLSEEAQTYERPQNQY-NSFTRDRFDASQRRQTRENFDDRIDSQKLRELIRELQQRSMPQYDRDRYETEFPKQYPVDPDQ 549
            M++ Q  ++QT+TV SA L V  M+ILLTAVFLSGC T SHAAEY PYQ +  ++      + +     R      ++   RH+            R+RPV++E   D Y+++LKQLLS E    +R +N+  + +    +    RR TR++F    DSQ+LRELIRELQQ+S+PQYDR+RY+T FP+Q P+DP+Q
Sbjct:    1 MNRSQCKYNQTETVNSARLVVWGMVILLTAVFLSGCATFSHAAEYTPYQGNDYRSNYDLPLDHEEDYRYRSPSNSDFAPIPRHRSXXXXXXXXXXRRFRPVSNELSMDNYDVRLKQLLSGEEYLNDRTRNRMRDQYPEQNYSVPDRR-TRDSFQSDYDSQRLRELIRELQQKSLPQYDRERYDTRFPEQVPLDPNQ 195          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig117458.3609.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A2E2C3A5_9PLAN4.340e-10290.71PDZ domain-containing protein n=2 Tax=Planctomycet... [more]
A0A517VMZ3_9PLAN8.500e-8176.50Putative CtpA-like serine protease n=8 Tax=Gimesia... [more]
A0A517RPI2_9PLAN3.510e-4252.46Putative CtpA-like serine protease n=2 Tax=Gimesia... [more]
A0A517VNY0_9PLAN6.290e-4051.63Putative CtpA-like serine protease n=2 Tax=Gimesia... [more]
A0A518AFL4_9PLAN5.910e-3345.45Putative CtpA-like serine protease n=6 Tax=Gimesia... [more]
A0A2E7KCI1_9PLAN2.100e-2943.37PDZ domain-containing protein n=10 Tax=Gimesia Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig117458contigM-pyrifera_M_contig117458:5..553 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score253.4
Seed ortholog evalue7.8e-65
Seed eggNOG ortholog344747.PM8797T_10729
Preferred nameprc
KEGG koko:K03797
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.Belongs to the peptidase S41A family
EggNOG OGsCOG0793@1,COG0793@2
EC3.4.21.102
COG Functional cat.M
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002
Exons1
Model size549
Cds size549
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815692.445608-CDS-M-pyrifera_M_contig117458:4..5531622815692.445608-CDS-M-pyrifera_M_contig117458:4..553Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117458 5..553 +
1692277524.3568802-CDS-M-pyrifera_M_contig117458:4..5531692277524.3568802-CDS-M-pyrifera_M_contig117458:4..553Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117458 5..553 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig117458.3609.1prot_M-pyrifera_M_contig117458.3609.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig117458 5..553 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig117458.3609.1

>prot_M-pyrifera_M_contig117458.3609.1 ID=prot_M-pyrifera_M_contig117458.3609.1|Name=mRNA_M-pyrifera_M_contig117458.3609.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=183bp
MSQLQVYHSQTDTVVSALLFVVIMLILLTAVFLSGCTTLSHAAEYDPYQN
HFNQNGSGQSFERDPFNAGRDSYTPSYSNGRRHQRYRPVTDENRFDEYEL
KLKQLLSEEAQTYERPQNQYNSFTRDRFDASQRRQTRENFDDRIDSQKLR
ELIRELQQRSMPQYDRDRYETEFPKQYPVDPDQ
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mRNA from alignment at M-pyrifera_M_contig117458:5..553+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig117458.3609.1 ID=mRNA_M-pyrifera_M_contig117458.3609.1|Name=mRNA_M-pyrifera_M_contig117458.3609.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=549bp|location=Sequence derived from alignment at M-pyrifera_M_contig117458:5..553+ (Macrocystis pyrifera P11B4 male)
ATGAGCCAATTACAGGTCTATCACTCGCAAACTGATACCGTCGTTTCCGC GCTTCTTTTTGTCGTTATTATGTTGATTCTGCTAACCGCAGTTTTTCTGT CTGGATGCACAACACTATCGCATGCGGCAGAGTATGACCCATATCAGAAT CATTTCAATCAAAATGGTTCTGGACAATCATTTGAACGCGACCCATTCAA TGCGGGTCGGGATTCATATACACCTTCTTATTCAAACGGTCGGCGTCATC AGCGATATCGCCCTGTTACAGATGAAAATCGATTTGATGAGTACGAACTA AAGCTGAAGCAACTGTTGTCGGAAGAGGCTCAAACTTATGAACGACCTCA AAACCAATACAATTCTTTCACCAGAGATCGATTTGATGCCAGTCAGAGAC GTCAAACTCGTGAAAATTTCGATGACAGAATCGACAGTCAGAAGTTAAGA GAGCTGATTCGAGAGTTGCAACAGAGGAGTATGCCTCAGTATGACCGAGA TCGATATGAAACGGAATTTCCCAAACAGTATCCTGTCGACCCAGACCAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig117458:5..553+

>mRNA_M-pyrifera_M_contig117458.3609.1 ID=mRNA_M-pyrifera_M_contig117458.3609.1|Name=mRNA_M-pyrifera_M_contig117458.3609.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1098bp|location=Sequence derived from alignment at M-pyrifera_M_contig117458:5..553+ (Macrocystis pyrifera P11B4 male)
ATGAGCCAATTACAGGTCTATCACTCGCAAACTGATACCGTCGTTTCCGC
GCTTCTTTTTGTCGTTATTATGTTGATTCTGCTAACCGCAGTTTTTCTGT
CTGGATGCACAACACTATCGCATGCGGCAGAGTATGACCCATATCAGAAT
CATTTCAATCAAAATGGTTCTGGACAATCATTTGAACGCGACCCATTCAA
TGCGGGTCGGGATTCATATACACCTTCTTATTCAAACGGTCGGCGTCATC
AGCGATATCGCCCTGTTACAGATGAAAATCGATTTGATGAGTACGAACTA
AAGCTGAAGCAACTGTTGTCGGAAGAGGCTCAAACTTATGAACGACCTCA
AAACCAATACAATTCTTTCACCAGAGATCGATTTGATGCCAGTCAGAGAC
GTCAAACTCGTGAAAATTTCGATGACAGAATCGACAGTCAGAAGTTAAGA
GAGCTGATTCGAGAGTTGCAACAGAGGAGTATGCCTCAGTATGACCGAGA
TCGATATGAAACGGAATTTCCCAAACAGTATCCTGTCGACCCAGACCAGA
TGAGCCAATTACAGGTCTATCACTCGCAAACTGATACCGTCGTTTCCGCG
CTTCTTTTTGTCGTTATTATGTTGATTCTGCTAACCGCAGTTTTTCTGTC
TGGATGCACAACACTATCGCATGCGGCAGAGTATGACCCATATCAGAATC
ATTTCAATCAAAATGGTTCTGGACAATCATTTGAACGCGACCCATTCAAT
GCGGGTCGGGATTCATATACACCTTCTTATTCAAACGGTCGGCGTCATCA
GCGATATCGCCCTGTTACAGATGAAAATCGATTTGATGAGTACGAACTAA
AGCTGAAGCAACTGTTGTCGGAAGAGGCTCAAACTTATGAACGACCTCAA
AACCAATACAATTCTTTCACCAGAGATCGATTTGATGCCAGTCAGAGACG
TCAAACTCGTGAAAATTTCGATGACAGAATCGACAGTCAGAAGTTAAGAG
AGCTGATTCGAGAGTTGCAACAGAGGAGTATGCCTCAGTATGACCGAGAT
CGATATGAAACGGAATTTCCCAAACAGTATCCTGTCGACCCAGACCAG
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