mRNA_M-pyrifera_M_contig117450.3608.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig117450.3608.1
Unique NamemRNA_M-pyrifera_M_contig117450.3608.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig117450.3608.1 vs. uniprot
Match: UPI00192E19A6 (multicopper oxidase family protein n=1 Tax=Burkholderia thailandensis TaxID=57975 RepID=UPI00192E19A6)

HSP 1 Score: 53.1 bits (126), Expect = 2.590e-5
Identity = 33/87 (37.93%), Postives = 48/87 (55.17%), Query Frame = 1 
Query:  190 AATD-SDVTYKSFLANGATNKAPIFVLHDDSEDYIVLRVINACGMTNMRVDL-PFVATLTAVDGQLVEPYQSDHFWISVAQRLDILI 444
            AA D +D+ Y ++LAN  T   P  V  +     + +RVIN    T   +D       L AVDGQ V+P +  HF +S+AQR+D+L+
Sbjct:  233 AALDLNDIDYDAYLANDRTLDDPEIVPVERGSR-VRVRVINGATATAFMIDFGALTGMLVAVDGQPVQPVEGQHFPLSMAQRIDVLL 318
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BLAST of mRNA_M-pyrifera_M_contig117450.3608.1 vs. uniprot
Match: A0A7G4A632_9GAMM (Copper oxidase n=7 Tax=Legionella TaxID=445 RepID=A0A7G4A632_9GAMM)

HSP 1 Score: 52.8 bits (125), Expect = 3.510e-5
Identity = 35/92 (38.04%), Postives = 51/92 (55.43%), Query Frame = 1 
Query:  178 PNVEAATD-SDVTYKSFLANGATNKAPIFV-LHDDSEDYIVLRVINACGMTNMRVDLPFV-ATLTAVDGQLVEPYQSDHFWISVAQRLDILI 444
            P   AA D +DV Y +FL N  T K P  V +H    D + LR I    M+N  ++   +     A+DGQ ++P QS+ F ++V QRLD+L+
Sbjct:  196 PMDNAAPDLNDVNYDAFLTNYKTLKNPQIVPVHPG--DTVRLRFIAGSAMSNFFINTGILKGEAIALDGQSIQPVQSEQFQLAVGQRLDVLV 285
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BLAST of mRNA_M-pyrifera_M_contig117450.3608.1 vs. uniprot
Match: UPI00167752DF (multicopper oxidase family protein n=1 Tax=Thalassobaculum fulvum TaxID=1633335 RepID=UPI00167752DF)

HSP 1 Score: 52.4 bits (124), Expect = 4.790e-5
Identity = 32/83 (38.55%), Postives = 47/83 (56.63%), Query Frame = 1 
Query:  202 SDVTYKSFLANGATNKAPIFVLHDDSEDYIVLRVINACGMTNMRVDLPF-VATLTAVDGQLVEPYQSDHFWISVAQRLDILID 447
            +DV Y ++LAN  T + P  V+  ++   + +R+IN    TN  +      A L AVDG+ V P     F IS+AQRLD+L+D
Sbjct:  228 NDVDYDAYLANSRTLQDPE-VVKVEANAKVRVRIINGGASTNFHISAGGRTARLIAVDGEPVAPIDDTVFPISIAQRLDLLVD 309
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig117450.3608.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
UPI00192E19A62.590e-537.93multicopper oxidase family protein n=1 Tax=Burkhol... [more]
A0A7G4A632_9GAMM3.510e-538.04Copper oxidase n=7 Tax=Legionella TaxID=445 RepID=... [more]
UPI00167752DF4.790e-538.55multicopper oxidase family protein n=1 Tax=Thalass... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig117450contigM-pyrifera_M_contig117450:51..551 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.0
Seed ortholog evalue2.1e-12
Seed eggNOG ortholog529818.AMSG_01353T0
KEGG rclassRC02795
KEGG koko:K02324
KEGG ReactionR00375,R00376,R00377,R00378
KEGG Pathwayko00230,ko00240,ko01100,ko03030,ko03410,ko03420,ko05166,map00230,map00240,map01100,map03030,map03410,map03420,map05166
KEGG ModuleM00263
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Multicopper oxidase
EggNOG OGsCOG2132@1,KOG1263@2759
EC2.7.7.7
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03400
Exons2
Model size447
Cds size447
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815692.399149-CDS-M-pyrifera_M_contig117450:50..4171622815692.399149-CDS-M-pyrifera_M_contig117450:50..417Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117450 51..417 -
1692277524.329361-CDS-M-pyrifera_M_contig117450:50..4171692277524.329361-CDS-M-pyrifera_M_contig117450:50..417Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117450 51..417 -
1622815692.4160192-CDS-M-pyrifera_M_contig117450:471..5511622815692.4160192-CDS-M-pyrifera_M_contig117450:471..551Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117450 472..551 -
1692277524.3475156-CDS-M-pyrifera_M_contig117450:471..5511692277524.3475156-CDS-M-pyrifera_M_contig117450:471..551Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117450 472..551 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig117450.3608.1prot_M-pyrifera_M_contig117450.3608.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig117450 51..551 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig117450.3608.1

>prot_M-pyrifera_M_contig117450.3608.1 ID=prot_M-pyrifera_M_contig117450.3608.1|Name=mRNA_M-pyrifera_M_contig117450.3608.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=149bp
YPYATEIFSGTDIVMLLEDVCPSAAEDDSGQEGDCSSWQTFLELAVSFNE
TNSEPPVECPNVEAATDSDVTYKSFLANGATNKAPIFVLHDDSEDYIVLR
VINACGMTNMRVDLPFVATLTAVDGQLVEPYQSDHFWISVAQRLDILID
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mRNA from alignment at M-pyrifera_M_contig117450:51..551-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig117450.3608.1 ID=mRNA_M-pyrifera_M_contig117450.3608.1|Name=mRNA_M-pyrifera_M_contig117450.3608.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=501bp|location=Sequence derived from alignment at M-pyrifera_M_contig117450:51..551- (Macrocystis pyrifera P11B4 male)
TATCCCTACGCGACAGAGATCTTTTCTGGCACAGACATTGTCATGCTGCT
GGAGGACGTCTGTCCCTCTGCTGCCGAGGAGTTCCTCGCCAAGAAGGCAG
CGCAGAGCTCCACTTCCATTGGAGATTTCGCGAGCGATTCCGGCCAGGAG
GGCGACTGCTCCTCGTGGCAGACTTTCTTGGAGCTTGCCGTGAGTTTCAA
CGAGACCAACAGCGAGCCACCGGTGGAGTGCCCCAACGTGGAGGCGGCGA
CAGACAGCGACGTTACGTACAAGTCCTTCCTCGCCAACGGCGCCACGAAC
AAGGCGCCCATCTTCGTCTTGCACGACGACAGCGAGGACTACATTGTGCT
GCGGGTTATCAACGCCTGCGGCATGACCAACATGCGGGTCGACCTCCCCT
TCGTCGCCACCCTCACTGCGGTGGACGGCCAGCTGGTGGAGCCCTACCAG
TCCGATCACTTCTGGATCTCTGTGGCGCAGAGGCTCGACATTCTCATCGA
C
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig117450:51..551-

>mRNA_M-pyrifera_M_contig117450.3608.1 ID=mRNA_M-pyrifera_M_contig117450.3608.1|Name=mRNA_M-pyrifera_M_contig117450.3608.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=894bp|location=Sequence derived from alignment at M-pyrifera_M_contig117450:51..551- (Macrocystis pyrifera P11B4 male)
TATCCCTACGCGACAGAGATCTTTTCTGGCACAGACATTGTCATGCTGCT
GGAGGACGTCTGTCCCTCTGCTGCCGAGGATATCCCTACGCGACAGAGAT
CTTTTCTGGCACAGACATTGTCATGCTGCTGGAGGACGTCTGTCCCTCTG
CTGCCGAGGACGATTCCGGCCAGGAGGGCGACTGCTCCTCGTGGCAGACT
TTCTTGGAGCTTGCCGTGAGTTTCAACGAGACCAACAGCGAGCCACCGGT
GGAGTGCCCCAACGTGGAGGCGGCGACAGACAGCGACGTTACGTACAAGT
CCTTCCTCGCCAACGGCGCCACGAACAAGGCGCCCATCTTCGTCTTGCAC
GACGACAGCGAGGACTACATTGTGCTGCGGGTTATCAACGCCTGCGGCAT
GACCAACATGCGGGTCGACCTCCCCTTCGTCGCCACCCTCACTGCGGTGG
ACGGCCAGCTGGTGGAGCCCTACCAGTCCGATCACTTCTGGATCTCTGTG
GCGCAGAGGCTCGACATTCTCATCGACCGATTCCGGCCAGGAGGGCGACT
GCTCCTCGTGGCAGACTTTCTTGGAGCTTGCCGTGAGTTTCAACGAGACC
AACAGCGAGCCACCGGTGGAGTGCCCCAACGTGGAGGCGGCGACAGACAG
CGACGTTACGTACAAGTCCTTCCTCGCCAACGGCGCCACGAACAAGGCGC
CCATCTTCGTCTTGCACGACGACAGCGAGGACTACATTGTGCTGCGGGTT
ATCAACGCCTGCGGCATGACCAACATGCGGGTCGACCTCCCCTTCGTCGC
CACCCTCACTGCGGTGGACGGCCAGCTGGTGGAGCCCTACCAGTCCGATC
ACTTCTGGATCTCTGTGGCGCAGAGGCTCGACATTCTCATCGAC
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