mRNA_M-pyrifera_M_contig117443.3606.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig117443.3606.1
Unique NamemRNA_M-pyrifera_M_contig117443.3606.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig117443.3606.1 vs. uniprot
Match: A0A5J4XG51_9CHLO (Ubiquinol oxidase n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XG51_9CHLO)

HSP 1 Score: 181 bits (459), Expect = 2.250e-53
Identity = 79/130 (60.77%), Postives = 100/130 (76.92%), Query Frame = 1
Query:   13 RMHLLTFMTVRQPGMFMRGMVLVAQGVFFNAFLFAYLLSPSTCHRFVGYLEEEAVKTYSACLEDIDNGRLEQWKVMDAPQIAKDYWRLSDDATFRDVIAAVRADEACHRHVNHTFASLGPNEKNPFTKGS 402
            RMHLLTF+ +RQPG   RG+VL++QG+FFNA+  AY++SP  CH FVGYLEEEAVKTY+ C+ D+D GRL +W     P IA++YW+L D AT RD++ +VRADEACH HVNHTFA L   +KNPF  G+
Sbjct:  241 RMHLLTFLQLRQPGFVFRGLVLLSQGIFFNAYFLAYVVSPKLCHSFVGYLEEEAVKTYTHCISDLDKGRLPEWSTKQVPDIAREYWKLGDKATMRDLLLSVRADEACHSHVNHTFAELNEEDKNPFAVGT 370          
BLAST of mRNA_M-pyrifera_M_contig117443.3606.1 vs. uniprot
Match: A0A1U7LLT5_NEOID (Alternative oxidase n=1 Tax=Neolecta irregularis (strain DAH-3) TaxID=1198029 RepID=A0A1U7LLT5_NEOID)

HSP 1 Score: 179 bits (455), Expect = 4.010e-53
Identity = 86/130 (66.15%), Postives = 100/130 (76.92%), Query Frame = 1
Query:    1 SSPHRMHLLTFMTVRQPGMFMRGMVLVAQGVFFNAFLFAYLLSPSTCHRFVGYLEEEAVKTYSACLEDIDNGRLEQWKVMDAPQIAKDYWRLSDDATFRDVIAAVRADEACHRHVNHTFASLGPNEKNPF 390
            S   RMHL+TFMT+RQP  FMR M+L+ QGVFFNA+  AY+LSP  CHRFVGYLEEEAV TY+ CL DID GRL+ W  + APQIAKDYW LS+DAT RDV+  VRADE+ HR VNHT A+L   +K PF
Sbjct:  190 SENERMHLMTFMTIRQPRAFMRLMILLGQGVFFNAYFLAYILSPRACHRFVGYLEEEAVITYTRCLSDIDGGRLDDWGKLPAPQIAKDYWSLSEDATLRDVLLVVRADESGHRSVNHTMANLSVRDKCPF 319          
BLAST of mRNA_M-pyrifera_M_contig117443.3606.1 vs. uniprot
Match: A0A0E9NS80_SAICN (Alternative oxidase n=2 Tax=Saitoella complicata (strain BCRC 22490 / CBS 7301 / JCM 7358 / NBRC 10748 / NRRL Y-17804) TaxID=698492 RepID=A0A0E9NS80_SAICN)

HSP 1 Score: 178 bits (452), Expect = 8.870e-52
Identity = 82/129 (63.57%), Postives = 101/129 (78.29%), Query Frame = 1
Query:   13 RMHLLTFMTVRQPGMFMRGMVLVAQGVFFNAFLFAYLLSPSTCHRFVGYLEEEAVKTYSACLEDIDNGRLEQWKVMDAPQIAKDYWRLSDDATFRDVIAAVRADEACHRHVNHTFASLGPNEKNPFTKG 399
            RMHLLTF+ +R PG FMR M+++ QGVF+N F  +YL+SP TCHRFVG+LEEEAV TYS C+ D+D G+L  WK   AP+IAK YW L DDAT RDV   VRADEA HRHVNH++A+LGP++ NPF +G
Sbjct:  258 RMHLLTFLEMRHPGWFMRTMIILGQGVFYNLFFASYLVSPRTCHRFVGFLEEEAVITYSRCIADLDAGKLPAWKDYPAPEIAKKYWGLGDDATLRDVFLVVRADEANHRHVNHSYANLGPDDPNPFREG 386          
BLAST of mRNA_M-pyrifera_M_contig117443.3606.1 vs. uniprot
Match: A0A816RUF3_9BILA (Hypothetical protein n=8 Tax=Rotaria TaxID=231623 RepID=A0A816RUF3_9BILA)

HSP 1 Score: 176 bits (445), Expect = 9.590e-52
Identity = 83/126 (65.87%), Postives = 96/126 (76.19%), Query Frame = 1
Query:   13 RMHLLTFMTVRQPGMFMRGMVLVAQGVFFNAFLFAYLLSPSTCHRFVGYLEEEAVKTYSACLEDIDNGRLEQWKVMDAPQIAKDYWRLSDDATFRDVIAAVRADEACHRHVNHTFASLGPNEKNPF 390
            RMHLLTF+ +RQPG   RG VL+ QG FFNAF   YL+SP  CHRFVG+LEEEAV TY+ C+EDID GRL  W  + APQIAK YWRL +++T RDV+ AVRADEA HR VNHT A +GPN  NPF
Sbjct:  192 RMHLLTFLELRQPGWLFRGFVLLGQGAFFNAFFLTYLISPRVCHRFVGFLEEEAVITYTRCIEDIDAGRLLAWSNLPAPQIAKTYWRLPENSTMRDVLLAVRADEANHREVNHTLADVGPNAPNPF 317          
BLAST of mRNA_M-pyrifera_M_contig117443.3606.1 vs. uniprot
Match: A0A813BNK6_9DINO (AlxA protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813BNK6_9DINO)

HSP 1 Score: 171 bits (432), Expect = 1.100e-51
Identity = 82/126 (65.08%), Postives = 98/126 (77.78%), Query Frame = 1
Query:   13 RMHLLTFMTVRQPGMFMRGMVLVAQGVFFNAFLFAYLLSPSTCHRFVGYLEEEAVKTYSACLEDIDNGRLEQWKVMDAPQIAKDYWRLSDDATFRDVIAAVRADEACHRHVNHTFASLGPNEKNPF 390
            RMHLLTF+ +++PG   RG+VL+AQGVFFN +  +YLLSP TCHRFVGYLEEEAVKTYS C+ DI+  RL QW+ M A +++K YW L +DAT  DVI AVRADEA HR VNHT + L PNE NPF
Sbjct:   54 RMHLLTFLELKKPGPAFRGLVLLAQGVFFNLYFISYLLSPRTCHRFVGYLEEEAVKTYSKCINDIET-RLPQWREMPATKLSKKYWHLPEDATMEDVIKAVRADEAIHREVNHTLSELKPNEPNPF 178          
BLAST of mRNA_M-pyrifera_M_contig117443.3606.1 vs. uniprot
Match: A0A813ZJ49_9BILA (Hypothetical protein n=4 Tax=Rotaria sordida TaxID=392033 RepID=A0A813ZJ49_9BILA)

HSP 1 Score: 175 bits (444), Expect = 1.160e-51
Identity = 80/126 (63.49%), Postives = 98/126 (77.78%), Query Frame = 1
Query:   13 RMHLLTFMTVRQPGMFMRGMVLVAQGVFFNAFLFAYLLSPSTCHRFVGYLEEEAVKTYSACLEDIDNGRLEQWKVMDAPQIAKDYWRLSDDATFRDVIAAVRADEACHRHVNHTFASLGPNEKNPF 390
            RMHLLTF+ +RQPG F RGMVL  QGVFFNAF   YLLSP  CHRFVG+LEEEAV TY+ C+ED+D G+L  W  + AP+IAK+YW+LS++A  RD++ A+RADEA HR VNH  A +GP+  NPF
Sbjct:  186 RMHLLTFLELRQPGWFFRGMVLFGQGVFFNAFFLTYLLSPRICHRFVGFLEEEAVITYTRCIEDLDAGKLPAWLTLSAPKIAKNYWKLSENAMMRDILLAIRADEATHREVNHKLADVGPDAPNPF 311          
BLAST of mRNA_M-pyrifera_M_contig117443.3606.1 vs. uniprot
Match: A0A0C2ZWV8_9AGAM (Alternative oxidase n=1 Tax=Scleroderma citrinum Foug A TaxID=1036808 RepID=A0A0C2ZWV8_9AGAM)

HSP 1 Score: 176 bits (445), Expect = 3.980e-51
Identity = 82/127 (64.57%), Postives = 105/127 (82.68%), Query Frame = 1
Query:   13 RMHLLTFMTVRQPGMFMRGMVLVAQGVFFNAFLFAYLLSPSTCHRFVGYLEEEAVKTYSACLEDIDNGRLEQWKVMDAPQIAKDYWRLSDDATFRDVIAAVRADEACHRHVNHTFASLGPN-EKNPF 390
            RMHL+TFMT++QP ++ R MVL AQGVF+N F F+YL+SP TCHRFVG+LEEEAV TY+ C+EDI++GRL +WK M AP+I+KDYWRL DDAT  DVI AVR+DE+ HR +NH+FA+L P  + +PF
Sbjct:  223 RMHLMTFMTLKQPSIWFRAMVLGAQGVFYNIFFFSYLISPKTCHRFVGHLEEEAVLTYTRCIEDIESGRLPEWKDMPAPKISKDYWRLPDDATLLDVIYAVRSDESTHRFINHSFANLNPKTDVSPF 349          
BLAST of mRNA_M-pyrifera_M_contig117443.3606.1 vs. uniprot
Match: A0A814DHN0_9BILA (Hypothetical protein n=4 Tax=Adineta steineri TaxID=433720 RepID=A0A814DHN0_9BILA)

HSP 1 Score: 174 bits (440), Expect = 5.260e-51
Identity = 80/126 (63.49%), Postives = 97/126 (76.98%), Query Frame = 1
Query:   13 RMHLLTFMTVRQPGMFMRGMVLVAQGVFFNAFLFAYLLSPSTCHRFVGYLEEEAVKTYSACLEDIDNGRLEQWKVMDAPQIAKDYWRLSDDATFRDVIAAVRADEACHRHVNHTFASLGPNEKNPF 390
            RMHLLTF+ +RQPG   RG VL+ QGVFFNAF   YLLSP  CHRFVG+LEEEAV TY+ C+E++D G+L  W+ + APQIAK+YW+LS+DA  RDV+  +RADEA HR VNH  A +GPN  NPF
Sbjct:  182 RMHLLTFLELRQPGYVFRGFVLLGQGVFFNAFFLTYLLSPQICHRFVGFLEEEAVITYTRCIENLDAGKLPAWRNLPAPQIAKNYWKLSNDAMIRDVLLVIRADEATHRQVNHKLADVGPNAPNPF 307          
BLAST of mRNA_M-pyrifera_M_contig117443.3606.1 vs. uniprot
Match: K8EPI5_9CHLO (Ubiquinol oxidase n=1 Tax=Bathycoccus prasinos TaxID=41875 RepID=K8EPI5_9CHLO)

HSP 1 Score: 176 bits (445), Expect = 5.870e-51
Identity = 82/133 (61.65%), Postives = 104/133 (78.20%), Query Frame = 1
Query:   13 RMHLLTFMTVRQPGMFMRGMVLVAQGVFFNAFLFAYLLSPSTCHRFVGYLEEEAVKTYSACLEDIDNGRLE--QWKVMDAPQIAKDYWRLSDDATFRDVIAAVRADEACHRHVNHTFASLGPNEKNPFTKGST 405
            RMHL+TF+ ++QP +F R  VL AQGVFFNAF F+YL+SP TCHRFVGYLEEEAV+TY+  L DID+G  +  QW    AP++A +YW++ +DAT RDV+ AVRADEA H HVNHTF+S+G  +KNPF KG +
Sbjct:  248 RMHLMTFLNMKQPSIFFRAGVLAAQGVFFNAFFFSYLISPRTCHRFVGYLEEEAVRTYTHALNDIDSGGTDARQWAKERAPKLAIEYWKMDEDATIRDVLLAVRADEASHAHVNHTFSSMGTTQKNPFVKGES 380          
BLAST of mRNA_M-pyrifera_M_contig117443.3606.1 vs. uniprot
Match: A0A087SJJ2_AUXPR (Ubiquinol oxidase n=2 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A087SJJ2_AUXPR)

HSP 1 Score: 172 bits (436), Expect = 1.010e-50
Identity = 79/130 (60.77%), Postives = 99/130 (76.15%), Query Frame = 1
Query:   13 RMHLLTFMTVRQPGMFMRGMVLVAQGVFFNAFLFAYLLSPSTCHRFVGYLEEEAVKTYSACLEDIDNGRLEQWKVMDAPQIAKDYWRLSDDATFRDVIAAVRADEACHRHVNHTFASLGPNEKNPFTKGS 402
            RMHLLTF+  R+PG  MRG VL+ QGVF N +L AY +SP TCH FVGYLEEEAVKTY+ C++D+D G + QW+    P+IA  YW+LS DAT RD++ AVRADEACH HVNH F+ + P+E+NPF  G+
Sbjct:  171 RMHLLTFLQFREPGPLMRGTVLLGQGVFLNFYLLAYTISPRTCHSFVGYLEEEAVKTYTRCIKDLDAGLIPQWEKKALPEIAIKYWQLSPDATMRDLLLAVRADEACHSHVNHAFSHMKPSEENPFLPGT 300          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig117443.3606.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5J4XG51_9CHLO2.250e-5360.77Ubiquinol oxidase n=1 Tax=Trebouxia sp. A1-2 TaxID... [more]
A0A1U7LLT5_NEOID4.010e-5366.15Alternative oxidase n=1 Tax=Neolecta irregularis (... [more]
A0A0E9NS80_SAICN8.870e-5263.57Alternative oxidase n=2 Tax=Saitoella complicata (... [more]
A0A816RUF3_9BILA9.590e-5265.87Hypothetical protein n=8 Tax=Rotaria TaxID=231623 ... [more]
A0A813BNK6_9DINO1.100e-5165.08AlxA protein n=1 Tax=Symbiodinium sp. KB8 TaxID=23... [more]
A0A813ZJ49_9BILA1.160e-5163.49Hypothetical protein n=4 Tax=Rotaria sordida TaxID... [more]
A0A0C2ZWV8_9AGAM3.980e-5164.57Alternative oxidase n=1 Tax=Scleroderma citrinum F... [more]
A0A814DHN0_9BILA5.260e-5163.49Hypothetical protein n=4 Tax=Adineta steineri TaxI... [more]
K8EPI5_9CHLO5.870e-5161.65Ubiquinol oxidase n=1 Tax=Bathycoccus prasinos Tax... [more]
A0A087SJJ2_AUXPR1.010e-5060.77Ubiquinol oxidase n=2 Tax=Auxenochlorella protothe... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig117443contigM-pyrifera_M_contig117443:118..534 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score175.3
Seed ortholog evalue2e-41
Seed eggNOG ortholog41875.XP_007508875.1
Preferred nameAOX1
KEGG rclassRC00061
KEGG koko:K17893
KEGG ReactionR09504
Hectar predicted targeting categorysignal peptide
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006091,GO:0006950,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0009060,GO:0009266,GO:0009409,GO:0009628,GO:0009916,GO:0009987,GO:0010230,GO:0015980,GO:0016491,GO:0016679,GO:0016682,GO:0023052,GO:0031930,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044424,GO:0044444,GO:0044464,GO:0045333,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0055114,GO:0065007
EggNOG free text desc.Belongs to the alternative oxidase family
EggNOG OGs28JWX@1,2QSB5@2759,34JQS@3041,37R9C@33090
EC1.10.3.11
COG Functional cat.Q
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Exons1
Model size417
Cds size402
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815692.3165011-CDS-M-pyrifera_M_contig117443:117..5191622815692.3165011-CDS-M-pyrifera_M_contig117443:117..519Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117443 118..519 -
1692277524.2935638-CDS-M-pyrifera_M_contig117443:117..5191692277524.2935638-CDS-M-pyrifera_M_contig117443:117..519Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117443 118..519 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815692.330593-UTR-M-pyrifera_M_contig117443:519..5341622815692.330593-UTR-M-pyrifera_M_contig117443:519..534Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig117443 520..534 -
1692277524.3058681-UTR-M-pyrifera_M_contig117443:519..5341692277524.3058681-UTR-M-pyrifera_M_contig117443:519..534Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig117443 520..534 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig117443.3606.1prot_M-pyrifera_M_contig117443.3606.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig117443 118..519 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig117443.3606.1

>prot_M-pyrifera_M_contig117443.3606.1 ID=prot_M-pyrifera_M_contig117443.3606.1|Name=mRNA_M-pyrifera_M_contig117443.3606.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=134bp
MHLLTFMTVRQPGMFMRGMVLVAQGVFFNAFLFAYLLSPSTCHRFVGYLE
EEAVKTYSACLEDIDNGRLEQWKVMDAPQIAKDYWRLSDDATFRDVIAAV
RADEACHRHVNHTFASLGPNEKNPFTKGSTAHE*
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mRNA from alignment at M-pyrifera_M_contig117443:118..534-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig117443.3606.1 ID=mRNA_M-pyrifera_M_contig117443.3606.1|Name=mRNA_M-pyrifera_M_contig117443.3606.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=417bp|location=Sequence derived from alignment at M-pyrifera_M_contig117443:118..534- (Macrocystis pyrifera P11B4 male)
TCCTCCCCTCACAGGATGCACTTGCTCACATTCATGACTGTCCGCCAACC TGGCATGTTCATGCGAGGCATGGTGCTGGTTGCGCAAGGCGTCTTCTTCA ACGCCTTCCTCTTCGCCTACCTGCTGTCGCCCAGCACCTGCCACCGCTTC GTTGGCTATCTGGAGGAGGAGGCTGTTAAAACGTACTCTGCGTGCCTGGA GGACATTGACAACGGGCGGCTGGAGCAGTGGAAGGTCATGGACGCGCCGC AAATCGCCAAGGACTACTGGCGCCTTAGCGACGACGCCACGTTCCGCGAC GTCATCGCCGCCGTGCGAGCAGATGAGGCGTGCCATCGCCATGTGAACCA CACTTTTGCCAGCCTTGGGCCAAACGAAAAGAACCCGTTCACCAAGGGCT CCACCGCTCATGAATGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig117443:118..534-

>mRNA_M-pyrifera_M_contig117443.3606.1 ID=mRNA_M-pyrifera_M_contig117443.3606.1|Name=mRNA_M-pyrifera_M_contig117443.3606.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=804bp|location=Sequence derived from alignment at M-pyrifera_M_contig117443:118..534- (Macrocystis pyrifera P11B4 male)
ATGCACTTGCTCACATTCATGACTGTCCGCCAACCTGGCATGTTCATGCG
AGGCATGGTGCTGGTTGCGCAAGGCGTCTTCTTCAACGCCTTCCTCTTCG
CCTACCTGCTGTCGCCCAGCACCTGCCACCGCTTCGTTGGCTATCTGGAG
GAGGAGGCTGTTAAAACGTACTCTGCGTGCCTGGAGGACATTGACAACGG
GCGGCTGGAGCAGTGGAAGGTCATGGACGCGCCGCAAATCGCCAAGGACT
ACTGGCGCCTTAGCGACGACGCCACGTTCCGCGACGTCATCGCCGCCGTG
CGAGCAGATGAGGCGTGCCATCGCCATGTGAACCACACTTTTGCCAGCCT
TGGGCCAAACGAAAAGAACCCGTTCACCAAGGGCTCCACCGCTCATGAAT
GAATGCACTTGCTCACATTCATGACTGTCCGCCAACCTGGCATGTTCATG
CGAGGCATGGTGCTGGTTGCGCAAGGCGTCTTCTTCAACGCCTTCCTCTT
CGCCTACCTGCTGTCGCCCAGCACCTGCCACCGCTTCGTTGGCTATCTGG
AGGAGGAGGCTGTTAAAACGTACTCTGCGTGCCTGGAGGACATTGACAAC
GGGCGGCTGGAGCAGTGGAAGGTCATGGACGCGCCGCAAATCGCCAAGGA
CTACTGGCGCCTTAGCGACGACGCCACGTTCCGCGACGTCATCGCCGCCG
TGCGAGCAGATGAGGCGTGCCATCGCCATGTGAACCACACTTTTGCCAGC
CTTGGGCCAAACGAAAAGAACCCGTTCACCAAGGGCTCCACCGCTCATGA
ATGA
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