mRNA_M-pyrifera_M_contig117433.3603.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig117433.3603.1
Unique NamemRNA_M-pyrifera_M_contig117433.3603.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig117433.3603.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig117433contigM-pyrifera_M_contig117433:4..354 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.9
Seed ortholog evalue5.6e-08
Seed eggNOG ortholog55529.EKX51628
KEGG koko:K11426,ko:K20346
KEGG TC9.B.188
Hectar predicted targeting categoryother localisation
EggNOG free text desc.SET domain
EggNOG OGsCOG2940@1,KOG2084@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000,ko03036,ko04131
Exons1
Model size351
Cds size351
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815692.1583114-CDS-M-pyrifera_M_contig117433:3..3541622815692.1583114-CDS-M-pyrifera_M_contig117433:3..354Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117433 4..354 +
1692277524.250404-CDS-M-pyrifera_M_contig117433:3..3541692277524.250404-CDS-M-pyrifera_M_contig117433:3..354Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117433 4..354 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig117433.3603.1prot_M-pyrifera_M_contig117433.3603.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig117433 4..354 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig117433.3603.1

>prot_M-pyrifera_M_contig117433.3603.1 ID=prot_M-pyrifera_M_contig117433.3603.1|Name=mRNA_M-pyrifera_M_contig117433.3603.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=117bp
GVVVLVASRAIQEGESITFSYAPVLFSGHGSAAQRQKLLLQVYGITCHCY
ACTSPDIERKILTIQKYDTMIPALLFRSQVKEAMKVGSELLQLLDDLSAS
PRSLSRTHHDLLNLATV
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mRNA from alignment at M-pyrifera_M_contig117433:4..354+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig117433.3603.1 ID=mRNA_M-pyrifera_M_contig117433.3603.1|Name=mRNA_M-pyrifera_M_contig117433.3603.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=351bp|location=Sequence derived from alignment at M-pyrifera_M_contig117433:4..354+ (Macrocystis pyrifera P11B4 male)
GGAGTCGTGGTGCTCGTTGCTTCCAGAGCAATTCAAGAAGGAGAGAGTAT
TACCTTCAGCTACGCACCTGTGCTATTTTCTGGCCATGGGAGTGCTGCCC
AGCGGCAAAAGCTGCTGCTGCAGGTCTACGGCATAACGTGTCACTGCTAC
GCCTGCACAAGTCCAGATATTGAGCGCAAGATCCTGACTATTCAGAAGTA
CGATACCATGATACCTGCACTCCTCTTCAGATCACAAGTTAAGGAGGCGA
TGAAGGTGGGTAGCGAGCTCTTGCAGCTGTTGGATGACTTGTCTGCCAGC
CCGAGGTCTCTCTCGAGGACACACCATGACTTGCTGAACTTGGCAACCGT
C
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig117433:4..354+

>mRNA_M-pyrifera_M_contig117433.3603.1 ID=mRNA_M-pyrifera_M_contig117433.3603.1|Name=mRNA_M-pyrifera_M_contig117433.3603.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=702bp|location=Sequence derived from alignment at M-pyrifera_M_contig117433:4..354+ (Macrocystis pyrifera P11B4 male)
GGAGTCGTGGTGCTCGTTGCTTCCAGAGCAATTCAAGAAGGAGAGAGTAT
TACCTTCAGCTACGCACCTGTGCTATTTTCTGGCCATGGGAGTGCTGCCC
AGCGGCAAAAGCTGCTGCTGCAGGTCTACGGCATAACGTGTCACTGCTAC
GCCTGCACAAGTCCAGATATTGAGCGCAAGATCCTGACTATTCAGAAGTA
CGATACCATGATACCTGCACTCCTCTTCAGATCACAAGTTAAGGAGGCGA
TGAAGGTGGGTAGCGAGCTCTTGCAGCTGTTGGATGACTTGTCTGCCAGC
CCGAGGTCTCTCTCGAGGACACACCATGACTTGCTGAACTTGGCAACCGT
CGGAGTCGTGGTGCTCGTTGCTTCCAGAGCAATTCAAGAAGGAGAGAGTA
TTACCTTCAGCTACGCACCTGTGCTATTTTCTGGCCATGGGAGTGCTGCC
CAGCGGCAAAAGCTGCTGCTGCAGGTCTACGGCATAACGTGTCACTGCTA
CGCCTGCACAAGTCCAGATATTGAGCGCAAGATCCTGACTATTCAGAAGT
ACGATACCATGATACCTGCACTCCTCTTCAGATCACAAGTTAAGGAGGCG
ATGAAGGTGGGTAGCGAGCTCTTGCAGCTGTTGGATGACTTGTCTGCCAG
CCCGAGGTCTCTCTCGAGGACACACCATGACTTGCTGAACTTGGCAACCG
TC
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