mRNA_M-pyrifera_M_contig117426.3599.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig117426.3599.1
Unique NamemRNA_M-pyrifera_M_contig117426.3599.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig117426.3599.1 vs. uniprot
Match: A0A7S4M827_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4M827_9EUKA)

HSP 1 Score: 85.9 bits (211), Expect = 5.800e-18
Identity = 47/84 (55.95%), Postives = 62/84 (73.81%), Query Frame = 1
Query:   61 LAYNSQARLDAVHQIESTMVELNSIMMEVSTMVAEQGEVVERISRDIDDANEHVLGAQEQLLKYLSSVSSNRGLILKMLFVLVI 312
            L Y+ QARLDA+  IE TM +LN IM+++S MV EQ  V+ERI  ++ D+  HV  AQ QL+K L +VSS+RGLILKM F+LV+
Sbjct:  184 LRYDGQARLDAIQDIERTMNDLNKIMVDISVMVEEQQVVMERIDNNVGDSLVHVERAQNQLIKILQNVSSDRGLILKMFFILVV 267          
BLAST of mRNA_M-pyrifera_M_contig117426.3599.1 vs. uniprot
Match: A9SZH2_PHYPA (Qa-SNARE, SYP3/Sed5p/Syntaxin 5-type n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A9SZH2_PHYPA)

HSP 1 Score: 86.7 bits (213), Expect = 8.580e-18
Identity = 55/111 (49.55%), Postives = 74/111 (66.67%), Query Frame = 1
Query:   16 GPGGQQSQALVQQSSLA----YNSQARLDAVHQIESTMVELNSIMMEVSTMVAEQGEVVERISRDIDDANEHVLGAQEQLLKYLSSVSSNRGLILKMLFVLVIFXXXXFVF 336
            GP   QSQA +QQ  LA       Q R +A+  +EST+VEL++I  +++TMVA+QGEV  RI  ++D++  +V GAQ QLLKYL S+SSNR LILK+  VL+ F     VF
Sbjct:  243 GPESSQSQARLQQQQLAPVQDSYMQNRAEALQNVESTIVELSTIFTQLATMVAQQGEVAIRIDENMDESLSNVEGAQNQLLKYLDSISSNRWLILKIFMVLITFLLIFVVF 353          
BLAST of mRNA_M-pyrifera_M_contig117426.3599.1 vs. uniprot
Match: A0A3L6SKT8_PANMI (Syntaxin 32 n=2 Tax=Panicum miliaceum TaxID=4540 RepID=A0A3L6SKT8_PANMI)

HSP 1 Score: 82.4 bits (202), Expect = 1.790e-16
Identity = 51/105 (48.57%), Postives = 75/105 (71.43%), Query Frame = 1
Query:   28 QQSQALVQQSSLAYNSQARLDAVHQIESTMVELNSIMMEVSTMVAEQGEVVERISRDIDDANEHVLGAQEQLLKYLSSVSSNRGLILKMLFVLVIFXXXXFVFFV 342
            QQ Q  VQQ S     Q+R +A+  +EST+ EL++I  +++TMV++QGE+  RI  ++DD   +V GAQ QLLKYL+S+SSNR L++K+ FVL++F    F+FFV
Sbjct:  197 QQQQLAVQQDSYM---QSRAEALQNVESTIHELSNIFTQLATMVSQQGELAIRIDENMDDTLANVEGAQGQLLKYLNSISSNRWLMMKIFFVLMVFLMI-FIFFV 297          
BLAST of mRNA_M-pyrifera_M_contig117426.3599.1 vs. uniprot
Match: A2ZPX7_ORYSJ (t-SNARE coiled-coil homology domain-containing protein n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=A2ZPX7_ORYSJ)

HSP 1 Score: 81.6 bits (200), Expect = 4.340e-16
Identity = 50/102 (49.02%), Postives = 74/102 (72.55%), Query Frame = 1
Query:   37 QALVQQSSLAYNSQARLDAVHQIESTMVELNSIMMEVSTMVAEQGEVVERISRDIDDANEHVLGAQEQLLKYLSSVSSNRGLILKMLFVLVIFXXXXFVFFV 342
            Q LVQQ S     Q+R +A+  +EST+ EL++I  +++TMV++QGE+  RI  ++DD   +V GAQ QLLKYL+S+SSNR L++K+ FVL++F    F+FFV
Sbjct:  221 QQLVQQDSYM---QSRAEALQNVESTIHELSNIFTQLATMVSQQGELAIRIDENMDDTLANVEGAQGQLLKYLNSISSNRWLMMKIFFVLMVFLMI-FIFFV 318          
BLAST of mRNA_M-pyrifera_M_contig117426.3599.1 vs. uniprot
Match: A0A0D9UXI6_9ORYZ (t-SNARE coiled-coil homology domain-containing protein n=1 Tax=Leersia perrieri TaxID=77586 RepID=A0A0D9UXI6_9ORYZ)

HSP 1 Score: 81.6 bits (200), Expect = 5.290e-16
Identity = 50/102 (49.02%), Postives = 74/102 (72.55%), Query Frame = 1
Query:   37 QALVQQSSLAYNSQARLDAVHQIESTMVELNSIMMEVSTMVAEQGEVVERISRDIDDANEHVLGAQEQLLKYLSSVSSNRGLILKMLFVLVIFXXXXFVFFV 342
            Q LVQQ S     Q+R +A+  +EST+ EL++I  +++TMV++QGE+  RI  ++DD   +V GAQ QLLKYL+S+SSNR L++K+ FVL++F    F+FFV
Sbjct:  243 QQLVQQDSYM---QSRAEALQNVESTIHELSNIFTQLATMVSQQGELAIRIDENMDDTLANVEGAQGQLLKYLNSISSNRWLMMKIFFVLMVFLMI-FIFFV 340          
BLAST of mRNA_M-pyrifera_M_contig117426.3599.1 vs. uniprot
Match: A0A0E0MS64_ORYRU (t-SNARE coiled-coil homology domain-containing protein n=14 Tax=Poaceae TaxID=4479 RepID=A0A0E0MS64_ORYRU)

HSP 1 Score: 81.6 bits (200), Expect = 5.420e-16
Identity = 50/102 (49.02%), Postives = 74/102 (72.55%), Query Frame = 1
Query:   37 QALVQQSSLAYNSQARLDAVHQIESTMVELNSIMMEVSTMVAEQGEVVERISRDIDDANEHVLGAQEQLLKYLSSVSSNRGLILKMLFVLVIFXXXXFVFFV 342
            Q LVQQ S     Q+R +A+  +EST+ EL++I  +++TMV++QGE+  RI  ++DD   +V GAQ QLLKYL+S+SSNR L++K+ FVL++F    F+FFV
Sbjct:  246 QQLVQQDSYM---QSRAEALQNVESTIHELSNIFTQLATMVSQQGELAIRIDENMDDTLANVEGAQGQLLKYLNSISSNRWLMMKIFFVLMVFLMI-FIFFV 343          
BLAST of mRNA_M-pyrifera_M_contig117426.3599.1 vs. uniprot
Match: A0A8B7MTR6_PHODC (syntaxin-32-like isoform X2 n=1 Tax=Phoenix dactylifera TaxID=42345 RepID=A0A8B7MTR6_PHODC)

HSP 1 Score: 80.1 bits (196), Expect = 9.340e-16
Identity = 52/115 (45.22%), Postives = 77/115 (66.96%), Query Frame = 1
Query:   10 MGGPGGQQSQALVQQSSLA----YNSQARLDAVHQIESTMVELNSIMMEVSTMVAEQGEVVERISRDIDDANEHVLGAQEQLLKYLSSVSSNRGLILKMLFVLVIFXXXXFVFFV 342
            M G     +Q LVQQ  +        Q+R +A+H +EST+ EL++I  +++TMV++QGE+  RI  ++DD   +V GAQ  LLKYL+SVSSNR L++K+ FVL++F    F+FFV
Sbjct:  157 MNGDPSSSTQPLVQQQQMVPVQDNYMQSRAEALHNVESTIHELSNIFTQLATMVSQQGELAIRIDENMDDTLANVEGAQGALLKYLNSVSSNRWLMIKIFFVLMVFLMI-FLFFV 270          
BLAST of mRNA_M-pyrifera_M_contig117426.3599.1 vs. uniprot
Match: K3XJG5_SETIT (t-SNARE coiled-coil homology domain-containing protein n=18 Tax=PACMAD clade TaxID=147370 RepID=K3XJG5_SETIT)

HSP 1 Score: 80.9 bits (198), Expect = 1.090e-15
Identity = 50/105 (47.62%), Postives = 75/105 (71.43%), Query Frame = 1
Query:   28 QQSQALVQQSSLAYNSQARLDAVHQIESTMVELNSIMMEVSTMVAEQGEVVERISRDIDDANEHVLGAQEQLLKYLSSVSSNRGLILKMLFVLVIFXXXXFVFFV 342
            QQ Q  VQQ S     Q+R +A+  +EST+ EL++I  +++TMV++QGE+  RI  ++D+   +V GAQ QLLKYL+S+SSNR L++K+ FVL++F    F+FFV
Sbjct:  249 QQQQLAVQQDSYM---QSRAEALQNVESTIHELSNIFTQLATMVSQQGELAIRIDENMDETLTNVEGAQGQLLKYLNSISSNRWLMMKIFFVLMVFLMI-FIFFV 349          
BLAST of mRNA_M-pyrifera_M_contig117426.3599.1 vs. uniprot
Match: A0A1X2G718_9FUNG (t-SNARE n=1 Tax=Hesseltinella vesiculosa TaxID=101127 RepID=A0A1X2G718_9FUNG)

HSP 1 Score: 80.5 bits (197), Expect = 1.380e-15
Identity = 51/103 (49.51%), Postives = 68/103 (66.02%), Query Frame = 1
Query:   28 QQSQALVQQSSLAYNSQARLDAVHQIESTMVELNSIMMEVSTMVAEQGEVVERISRDIDDANEHVLGAQEQLLKYLSSVSSNRGLILKMLFVLVIFXXXXFVF 336
            QQ QA+  Q     N   R +A+  IEST+ EL SI  +++TMVAEQ E V+RI ++ DD   +V+GAQ +LLKY +S+SSNR LI+K+ FV VIF    F F
Sbjct:  239 QQQQAVADQDQYIEN---RSNAIESIESTIAELGSIFQQLATMVAEQRETVQRIDQNTDDIEMNVMGAQRELLKYYTSISSNRWLIIKV-FVTVIFFFLLFSF 337          
BLAST of mRNA_M-pyrifera_M_contig117426.3599.1 vs. uniprot
Match: A0A388K8E5_CHABU (t-SNARE coiled-coil homology domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388K8E5_CHABU)

HSP 1 Score: 80.5 bits (197), Expect = 1.810e-15
Identity = 44/86 (51.16%), Postives = 63/86 (73.26%), Query Frame = 1
Query:   79 ARLDAVHQIESTMVELNSIMMEVSTMVAEQGEVVERISRDIDDANEHVLGAQEQLLKYLSSVSSNRGLILKMLFVLVIFXXXXFVF 336
            +R +A+  +EST+VEL+SI  +++TMVAEQGE+  RI  +++D   +V GAQ  LLKYLS +SSNR L++K+ FVL+IF     VF
Sbjct:  293 SRAEALQNVESTIVELSSIFQQLATMVAEQGEMAVRIDENLEDTLANVEGAQGALLKYLSRISSNRWLVIKIFFVLIIFLLIFVVF 378          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig117426.3599.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4M827_9EUKA5.800e-1855.95Hypothetical protein (Fragment) n=1 Tax=Vannella s... [more]
A9SZH2_PHYPA8.580e-1849.55Qa-SNARE, SYP3/Sed5p/Syntaxin 5-type n=2 Tax=Physc... [more]
A0A3L6SKT8_PANMI1.790e-1648.57Syntaxin 32 n=2 Tax=Panicum miliaceum TaxID=4540 R... [more]
A2ZPX7_ORYSJ4.340e-1649.02t-SNARE coiled-coil homology domain-containing pro... [more]
A0A0D9UXI6_9ORYZ5.290e-1649.02t-SNARE coiled-coil homology domain-containing pro... [more]
A0A0E0MS64_ORYRU5.420e-1649.02t-SNARE coiled-coil homology domain-containing pro... [more]
A0A8B7MTR6_PHODC9.340e-1645.22syntaxin-32-like isoform X2 n=1 Tax=Phoenix dactyl... [more]
K3XJG5_SETIT1.090e-1547.62t-SNARE coiled-coil homology domain-containing pro... [more]
A0A1X2G718_9FUNG1.380e-1549.51t-SNARE n=1 Tax=Hesseltinella vesiculosa TaxID=101... [more]
A0A388K8E5_CHABU1.810e-1551.16t-SNARE coiled-coil homology domain-containing pro... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig117426contigM-pyrifera_M_contig117426:74..418 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score87.8
Seed ortholog evalue3.5e-15
Seed eggNOG ortholog3218.PP1S142_96V6.1
KEGG koko:K08490
KEGG Pathwayko04130,map04130
Hectar predicted targeting categoryother localisation
GOsGO:0000139,GO:0000149,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0006810,GO:0006888,GO:0006906,GO:0006996,GO:0008150,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0016043,GO:0016050,GO:0016192,GO:0022406,GO:0031090,GO:0031201,GO:0031224,GO:0031984,GO:0032991,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0046907,GO:0048193,GO:0048278,GO:0048284,GO:0051179,GO:0051234,GO:0051640,GO:0051641,GO:0051649,GO:0061024,GO:0061025,GO:0071840,GO:0090174,GO:0098588,GO:0098791,GO:0098796,GO:0140056
EggNOG free text desc.Belongs to the syntaxin family
EggNOG OGs37PC6@33090,3G71P@35493,KOG0812@1,KOG0812@2759
COG Functional cat.U
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Exons1
Model size345
Cds size336
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815691.9786708-UTR-M-pyrifera_M_contig117426:73..821622815691.9786708-UTR-M-pyrifera_M_contig117426:73..82Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig117426 74..82 +
1692277524.1600232-UTR-M-pyrifera_M_contig117426:73..821692277524.1600232-UTR-M-pyrifera_M_contig117426:73..82Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig117426 74..82 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815691.9925961-CDS-M-pyrifera_M_contig117426:82..4181622815691.9925961-CDS-M-pyrifera_M_contig117426:82..418Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117426 83..418 +
1692277524.172877-CDS-M-pyrifera_M_contig117426:82..4181692277524.172877-CDS-M-pyrifera_M_contig117426:82..418Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117426 83..418 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig117426.3599.1prot_M-pyrifera_M_contig117426.3599.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig117426 83..418 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig117426.3599.1

>prot_M-pyrifera_M_contig117426.3599.1 ID=prot_M-pyrifera_M_contig117426.3599.1|Name=mRNA_M-pyrifera_M_contig117426.3599.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=112bp
MGGPGGQQSQALVQQSSLAYNSQARLDAVHQIESTMVELNSIMMEVSTMV
AEQGEVVERISRDIDDANEHVLGAQEQLLKYLSSVSSNRGLILKMLFVLV
IFVIIFFVFFV*
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mRNA from alignment at M-pyrifera_M_contig117426:74..418+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig117426.3599.1 ID=mRNA_M-pyrifera_M_contig117426.3599.1|Name=mRNA_M-pyrifera_M_contig117426.3599.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=345bp|location=Sequence derived from alignment at M-pyrifera_M_contig117426:74..418+ (Macrocystis pyrifera P11B4 male)
GAGGGCGGCATGGGCGGCCCAGGAGGACAGCAGAGCCAAGCGCTCGTCCA GCAGTCGTCGCTGGCTTACAACAGCCAGGCTCGGCTCGACGCTGTACACC AGATCGAGTCTACGATGGTGGAGCTCAACTCGATCATGATGGAGGTGTCT ACGATGGTGGCTGAGCAGGGCGAGGTAGTGGAGAGGATCAGCAGAGATAT CGACGACGCAAACGAGCATGTGCTTGGCGCTCAAGAACAGCTCCTCAAGT ACCTCAGCAGCGTCTCTAGCAACAGAGGCCTCATCCTCAAAATGCTCTTC GTCCTCGTCATCTTCGTCATCATCTTCTTCGTCTTCTTCGTGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig117426:74..418+

>mRNA_M-pyrifera_M_contig117426.3599.1 ID=mRNA_M-pyrifera_M_contig117426.3599.1|Name=mRNA_M-pyrifera_M_contig117426.3599.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=672bp|location=Sequence derived from alignment at M-pyrifera_M_contig117426:74..418+ (Macrocystis pyrifera P11B4 male)
ATGGGCGGCCCAGGAGGACAGCAGAGCCAAGCGCTCGTCCAGCAGTCGTC
GCTGGCTTACAACAGCCAGGCTCGGCTCGACGCTGTACACCAGATCGAGT
CTACGATGGTGGAGCTCAACTCGATCATGATGGAGGTGTCTACGATGGTG
GCTGAGCAGGGCGAGGTAGTGGAGAGGATCAGCAGAGATATCGACGACGC
AAACGAGCATGTGCTTGGCGCTCAAGAACAGCTCCTCAAGTACCTCAGCA
GCGTCTCTAGCAACAGAGGCCTCATCCTCAAAATGCTCTTCGTCCTCGTC
ATCTTCGTCATCATCTTCTTCGTCTTCTTCGTGTGAATGGGCGGCCCAGG
AGGACAGCAGAGCCAAGCGCTCGTCCAGCAGTCGTCGCTGGCTTACAACA
GCCAGGCTCGGCTCGACGCTGTACACCAGATCGAGTCTACGATGGTGGAG
CTCAACTCGATCATGATGGAGGTGTCTACGATGGTGGCTGAGCAGGGCGA
GGTAGTGGAGAGGATCAGCAGAGATATCGACGACGCAAACGAGCATGTGC
TTGGCGCTCAAGAACAGCTCCTCAAGTACCTCAGCAGCGTCTCTAGCAAC
AGAGGCCTCATCCTCAAAATGCTCTTCGTCCTCGTCATCTTCGTCATCAT
CTTCTTCGTCTTCTTCGTGTGA
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