mRNA_M-pyrifera_M_contig117423.3597.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig117423.3597.1
Unique NamemRNA_M-pyrifera_M_contig117423.3597.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig117423.3597.1 vs. uniprot
Match: A0A7X8BPT4_9BACT (Tricorn protease homolog n=1 Tax=Bacteroidales bacterium TaxID=2030927 RepID=A0A7X8BPT4_9BACT)

HSP 1 Score: 51.2 bits (121), Expect = 1.460e-5
Identity = 28/74 (37.84%), Postives = 41/74 (55.41%), Query Frame = 1 
Query:    4 SPTYSPDGTQLAYYEYFNGVPEIMVYSFSDSKSS---QITSGDGAWSIVPKWNKAGDKLMFS-HGQNMMTLDVA 213
            SPT+SPDG Q+AYY    G  E  +Y   ++K +   QIT G  AW   P+W+     L++S  G  +  +D+A
Sbjct:  358 SPTWSPDGKQIAYYSDATG--EYELYLLENTKGAEPRQITRGSSAWKHAPEWSPRSTHLVYSDRGMKLWLVDIA 429
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig117423.3597.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7X8BPT4_9BACT1.460e-537.84Tricorn protease homolog n=1 Tax=Bacteroidales bac... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig117423contigM-pyrifera_M_contig117423:238..480 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size243
Cds size243
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815691.9042394-CDS-M-pyrifera_M_contig117423:237..4801622815691.9042394-CDS-M-pyrifera_M_contig117423:237..480Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117423 238..480 +
1692277524.1396778-CDS-M-pyrifera_M_contig117423:237..4801692277524.1396778-CDS-M-pyrifera_M_contig117423:237..480Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117423 238..480 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig117423.3597.1prot_M-pyrifera_M_contig117423.3597.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig117423 238..480 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig117423.3597.1

>prot_M-pyrifera_M_contig117423.3597.1 ID=prot_M-pyrifera_M_contig117423.3597.1|Name=mRNA_M-pyrifera_M_contig117423.3597.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=81bp
FSPTYSPDGTQLAYYEYFNGVPEIMVYSFSDSKSSQITSGDGAWSIVPKW
NKAGDKLMFSHGQNMMTLDVAIYSMDSKEMK
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mRNA from alignment at M-pyrifera_M_contig117423:238..480+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig117423.3597.1 ID=mRNA_M-pyrifera_M_contig117423.3597.1|Name=mRNA_M-pyrifera_M_contig117423.3597.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=243bp|location=Sequence derived from alignment at M-pyrifera_M_contig117423:238..480+ (Macrocystis pyrifera P11B4 male)
TTCTCACCTACCTATTCACCTGATGGAACCCAACTTGCCTATTATGAATA
TTTTAATGGAGTACCTGAGATTATGGTTTATTCGTTTTCCGATTCCAAGT
CCTCGCAAATAACTTCTGGCGATGGCGCATGGAGTATCGTCCCTAAATGG
AACAAAGCTGGTGATAAACTAATGTTTTCACATGGTCAGAATATGATGAC
ATTAGATGTTGCAATTTATTCAATGGATTCGAAAGAAATGAAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig117423:238..480+

>mRNA_M-pyrifera_M_contig117423.3597.1 ID=mRNA_M-pyrifera_M_contig117423.3597.1|Name=mRNA_M-pyrifera_M_contig117423.3597.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=486bp|location=Sequence derived from alignment at M-pyrifera_M_contig117423:238..480+ (Macrocystis pyrifera P11B4 male)
TTCTCACCTACCTATTCACCTGATGGAACCCAACTTGCCTATTATGAATA
TTTTAATGGAGTACCTGAGATTATGGTTTATTCGTTTTCCGATTCCAAGT
CCTCGCAAATAACTTCTGGCGATGGCGCATGGAGTATCGTCCCTAAATGG
AACAAAGCTGGTGATAAACTAATGTTTTCACATGGTCAGAATATGATGAC
ATTAGATGTTGCAATTTATTCAATGGATTCGAAAGAAATGAAATTCTCAC
CTACCTATTCACCTGATGGAACCCAACTTGCCTATTATGAATATTTTAAT
GGAGTACCTGAGATTATGGTTTATTCGTTTTCCGATTCCAAGTCCTCGCA
AATAACTTCTGGCGATGGCGCATGGAGTATCGTCCCTAAATGGAACAAAG
CTGGTGATAAACTAATGTTTTCACATGGTCAGAATATGATGACATTAGAT
GTTGCAATTTATTCAATGGATTCGAAAGAAATGAAA
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