mRNA_M-pyrifera_M_contig11739.3591.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig11739.3591.1
Unique NamemRNA_M-pyrifera_M_contig11739.3591.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig11739.3591.1 vs. uniprot
Match: D7FY02_ECTSI (Beta-lactamase domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY02_ECTSI)

HSP 1 Score: 120 bits (302), Expect = 1.870e-32
Identity = 52/81 (64.20%), Postives = 64/81 (79.01%), Query Frame = 1 
Query:    1 PNTALGNNRGVPLPEWYQEEVLEVGGLRFALHKAHIHQRGDYLIHLDKNDPKNADAGIATGVAMVTDAIFPGWSPFLSIGV 243
            PNT  GNNRGVP+PEWYQEEVLEVGGLRF L KA+ HQ GD ++ LDK+DP+NA  GI + + MVTD +F GW+PF S+ +
Sbjct:  127 PNTVFGNNRGVPVPEWYQEEVLEVGGLRFTLEKANAHQGGDLMVTLDKHDPQNAGEGIDSTIFMVTDTVFAGWAPFYSVNI 207
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11739.3591.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FY02_ECTSI1.870e-3264.20Beta-lactamase domain protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig11739contigM-pyrifera_M_contig11739:8372..9110 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score120.6
Seed ortholog evalue3.5e-25
Seed eggNOG ortholog2880.D7FY02
Hectar predicted targeting categoryother localisation
EggNOG OGs2CJFE@1,2SA2M@2759
Ec32 ortholog descriptionBeta-lactamase-like
Ec32 orthologEc-09_002450.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size248
Cds size246
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig11739.3591.1prot_M-pyrifera_M_contig11739.3591.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig11739 8372..9109 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815691.6020317-CDS-M-pyrifera_M_contig11739:8371..85401622815691.6020317-CDS-M-pyrifera_M_contig11739:8371..8540Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11739 8372..8540 +
1692277523.9957206-CDS-M-pyrifera_M_contig11739:8371..85401692277523.9957206-CDS-M-pyrifera_M_contig11739:8371..8540Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11739 8372..8540 +
1622815691.6122837-CDS-M-pyrifera_M_contig11739:8736..87851622815691.6122837-CDS-M-pyrifera_M_contig11739:8736..8785Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11739 8737..8785 +
1692277524.0048735-CDS-M-pyrifera_M_contig11739:8736..87851692277524.0048735-CDS-M-pyrifera_M_contig11739:8736..8785Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11739 8737..8785 +
1622815691.624321-CDS-M-pyrifera_M_contig11739:9081..91091622815691.624321-CDS-M-pyrifera_M_contig11739:9081..9109Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11739 9082..9109 +
1692277524.0127485-CDS-M-pyrifera_M_contig11739:9081..91091692277524.0127485-CDS-M-pyrifera_M_contig11739:9081..9109Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11739 9082..9109 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig11739.3591.1

>prot_M-pyrifera_M_contig11739.3591.1 ID=prot_M-pyrifera_M_contig11739.3591.1|Name=mRNA_M-pyrifera_M_contig11739.3591.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=82bp
PNTALGNNRGVPLPEWYQEEVLEVGGLRFALHKAHIHQRGDYLIHLDKND
PKNADAGIATGVAMVTDAIFPGWSPFLSIGVT
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mRNA from alignment at M-pyrifera_M_contig11739:8372..9110+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig11739.3591.1 ID=mRNA_M-pyrifera_M_contig11739.3591.1|Name=mRNA_M-pyrifera_M_contig11739.3591.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=739bp|location=Sequence derived from alignment at M-pyrifera_M_contig11739:8372..9110+ (Macrocystis pyrifera P11B4 male)
CCCAACACGGCGCTCGGCAACAACCGCGGCGTTCCATTGCCCGAGTGGTA
CCAGGAGGAAGTGCTTGAGGTGGGCGGCCTCCGCTTCGCTCTGCACAAAG
CCCACATCCACCAGAGGGGGGACTACCTGATCCACCTCGACAAGAACGAC
CCAAAAAATGCCGATGCAGGTACAGCTAAATAATATACTGGTGTAGAATA
ACTGCGAACAATTGTGGTAGCAGTTGACTCCTCGCCTCACTGCTTTGGGC
TGAAACAGGGCAGCTGTTGTTCCTATACACGTACGGCTCGAGTATATATG
TTCACTCAATCTCTTCCCGTCTCCGGCTGTGTGGTGTGTCCGGGCGATCG
CTTGAAAATCTGCAGGTATCGCGACCGGCGTAGCAATGGTAACCGACGCC
ATCTTCCCGGGCTGGTAAGCACGTACCGCGCGTAGATTTGCCCGTTATGA
GTTGTCAGGAGTAGACTGCTTGCCTCAGGCTCGTATCGAGTCCCACGAGT
ATCGTATTATCAATGGCAGTGTGTGCAAGAGGGTGGAAAGAAGGAAACGC
CCTCCTACTTGTACACAAATCCCCTGACGTTTGACATGCGTTTTACCGGG
GCCCTGTCAACACCAAATGTTTAGCCCCCAGTCGTGTGTCGAATTTTCCT
TCAATACTCCGTATTTTGTTGTATATTCGATTTACTTTTGTTCGCGGTGG
TGCTGCACAGGTCTCCCTTCTTGTCTATTGGGGTCACCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig11739:8372..9110+

>mRNA_M-pyrifera_M_contig11739.3591.1 ID=mRNA_M-pyrifera_M_contig11739.3591.1|Name=mRNA_M-pyrifera_M_contig11739.3591.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=492bp|location=Sequence derived from alignment at M-pyrifera_M_contig11739:8372..9110+ (Macrocystis pyrifera P11B4 male)
CCCAACACGGCGCTCGGCAACAACCGCGGCGTTCCATTGCCCGAGTGGTA
CCAGGAGGAAGTGCTTGAGGTGGGCGGCCTCCGCTTCGCTCTGCACAAAG
CCCACATCCACCAGAGGGGGGACTACCTGATCCACCTCGACAAGAACGAC
CCAAAAAATGCCGATGCAGCCCAACACGGCGCTCGGCAACAACCGCGGCG
TTCCATTGCCCGAGTGGTACCAGGAGGAAGTGCTTGAGGTGGGCGGCCTC
CGCTTCGCTCTGCACAAAGCCCACATCCACCAGAGGGGGGACTACCTGAT
CCACCTCGACAAGAACGACCCAAAAAATGCCGATGCAGGTATCGCGACCG
GCGTAGCAATGGTAACCGACGCCATCTTCCCGGGCTGGTATCGCGACCGG
CGTAGCAATGGTAACCGACGCCATCTTCCCGGGCTGGTCTCCCTTCTTGT
CTATTGGGGTCACCGTCTCCCTTCTTGTCTATTGGGGTCACC
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