mRNA_M-pyrifera_M_contig117319.3583.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig117319.3583.1
Unique NamemRNA_M-pyrifera_M_contig117319.3583.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig117319.3583.1 vs. uniprot
Match: A0A7C1WL50_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7C1WL50_9BACT)

HSP 1 Score: 113 bits (283), Expect = 5.300e-27
Identity = 74/176 (42.05%), Postives = 105/176 (59.66%), Query Frame = 1 
Query:   55 NLRLLGSSGRILMRDTRAKLDEMLGLLEELDRPSPQLELTCYVLR-------GTDTPGDSGLPAALTDNLSRLVPFEGFELATMGIVRTGADYAGTGLSMDMEGSDESFSLSARLTAFD-DSTEGREVLTIRDC---RMMRVHDGVTELFKTDTSIVGGEYAVLGATGSTPVFVVL 549
            ++  L  SGR+++R ++A+++EM+ LL   D PSPQL++TC VLR       G+  P    LPA LTDNL+RLVP++ FELA+ G VR       T + + M G  E F L+  +   D DS++    LT+  C   +++R    V +LF   T++  GEYAVLGA G  PVFVVL
Sbjct:  156 SILFLPESGRLVLRGSKARIEEMVELLRRFDTPSPQLQITCRVLRVGAPSAEGSSPPAT--LPAELTDNLARLVPYDTFELASFGTVRA-TSVPATRVKLRMPGETEDFELNLTIQNLDADSSD----LTLNLCSVRQIVRESGKVKDLFSVATTLTAGEYAVLGAVGKDPVFVVL 324
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BLAST of mRNA_M-pyrifera_M_contig117319.3583.1 vs. uniprot
Match: A0A521H1Z1_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A521H1Z1_9BACT)

HSP 1 Score: 82.4 bits (202), Expect = 2.310e-15
Identity = 69/204 (33.82%), Postives = 104/204 (50.98%), Query Frame = 1 
Query:    4 LEPFARSIWD-EEVG---SRPNLRLLGSSGRILMRDTRAKLDEMLGLLEELDRPSPQLELTCYVLRGTDT----PGDSGLPAALTDNLSRLVPFEGFELATMGIVRTGADYAGTGLSMDMEGSD-----------ESFSLSARLTAFDDSTEGREVLTIRDCR--MMRVHDGVTELFKTDTSIVGGEYAVLGATGSTPVFVVLR 552
            L PF RSI   + +G   S  N+ ++  +G +++RD    L +M  LL+ +DRP PQ+ LTCYVLRG  +    PG + +PA L   L  L+P        +G++RT    AG  L+ +M+G              S+ L     AFD +     +L +  C   +    +G  E+F T T+I   EYAVLG  G+ P+F+VL+
Sbjct:  129 LSPFHRSIEVYDALGNGMSFDNVSVVEENGLLVLRDEPEMLRQMKDLLDRIDRPVPQVMLTCYVLRGPTSGEQAPGQA-IPAELQRTLQALLPGTTLVAEALGMLRT-TTAAGKELAFNMDGLAVARTEDGTQYRRSYRLLLNTGAFDANAG---ILNLEYCSFSLSDPMEGDREVFSTSTTIHSNEYAVLGVVGAQPLFIVLQ 327
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BLAST of mRNA_M-pyrifera_M_contig117319.3583.1 vs. uniprot
Match: A0A518CW37_9BACT (Bacterial type II/III secretion system short domain protein n=1 Tax=Planctomycetes bacterium Pla163 TaxID=2528008 RepID=A0A518CW37_9BACT)

HSP 1 Score: 72.0 bits (175), Expect = 1.420e-11
Identity = 49/172 (28.49%), Postives = 82/172 (47.67%), Query Frame = 1 
Query:   76 SGRILMRDTRAKLDEMLGLLEELDRPSPQLELTCYVLRGTDTPG-----------DSGLPAALTDNLSRLVPFEGFELATMGIVRTGADYAGTGLSMDMEGSDESFSLSARLTAFDDSTE--GREVLTIRDCRMMRVHDGVTELFKTDTSIVGGEYAVLGATGSTPVFVVLR 552
            +G +++R+T   + E+  +LE++D+P PQ+ +T Y++RG D              D GLPA L  +L  ++P EGF+  + G+++   D        D       F L  + T FD  +   G E +     +         + F+T   +  G + VLG  G+TPVF+VL 
Sbjct:  183 TGSVIVRETVPMIAEIRRVLEQIDQPEPQVRMTYYLVRGVDAETMESEGIESADLDQGLPADLVRDLGAILPVEGFQTLSFGVLQ--GDAMAERQVTDTLADGSQFMLGLQPTTFDRESGVLGLEQMNFEFNQQRSTGGFDMKRFRTSAQLEPGRFTVLGGVGATPVFLVLH 352
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BLAST of mRNA_M-pyrifera_M_contig117319.3583.1 vs. uniprot
Match: A0A812ZZN0_9DINO (SigM protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812ZZN0_9DINO)

HSP 1 Score: 56.2 bits (134), Expect = 5.680e-6
Identity = 30/85 (35.29%), Postives = 50/85 (58.82%), Query Frame = 1 
Query:   58 LRLLGSSGRILMRDTRAKLDEMLGLLEELDRPSPQLELTCYVLRGT--DTPGDSGLPAALTDNLSRLVPFEGFELATMGIVRTGA 306
            +R LG  G ++++    +++    LLE+LDRP+PQ+ ++ YVL GT  D    S   + LTD L  L+P+E +++    +VR  A
Sbjct:  575 VRNLGQGGPLILQGRSKQIENAKELLEQLDRPAPQVMVSGYVLTGTNDDDAKGSNANSELTDVLQELLPYESYKIQAASVVRVAA 659
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig117319.3583.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A7C1WL50_9BACT5.300e-2742.05Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A521H1Z1_9BACT2.310e-1533.82Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A518CW37_9BACT1.420e-1128.49Bacterial type II/III secretion system short domai... [more]
A0A812ZZN0_9DINO5.680e-635.29SigM protein n=1 Tax=Symbiodinium sp. KB8 TaxID=23... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig117319contigM-pyrifera_M_contig117319:5..556 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size552
Cds size552
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815691.0246477-CDS-M-pyrifera_M_contig117319:4..5561622815691.0246477-CDS-M-pyrifera_M_contig117319:4..556Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117319 5..556 -
1692277523.8443902-CDS-M-pyrifera_M_contig117319:4..5561692277523.8443902-CDS-M-pyrifera_M_contig117319:4..556Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117319 5..556 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig117319.3583.1prot_M-pyrifera_M_contig117319.3583.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig117319 5..556 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig117319.3583.1

>prot_M-pyrifera_M_contig117319.3583.1 ID=prot_M-pyrifera_M_contig117319.3583.1|Name=mRNA_M-pyrifera_M_contig117319.3583.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=184bp
GLEPFARSIWDEEVGSRPNLRLLGSSGRILMRDTRAKLDEMLGLLEELDR
PSPQLELTCYVLRGTDTPGDSGLPAALTDNLSRLVPFEGFELATMGIVRT
GADYAGTGLSMDMEGSDESFSLSARLTAFDDSTEGREVLTIRDCRMMRVH
DGVTELFKTDTSIVGGEYAVLGATGSTPVFVVLR
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mRNA from alignment at M-pyrifera_M_contig117319:5..556-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig117319.3583.1 ID=mRNA_M-pyrifera_M_contig117319.3583.1|Name=mRNA_M-pyrifera_M_contig117319.3583.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=552bp|location=Sequence derived from alignment at M-pyrifera_M_contig117319:5..556- (Macrocystis pyrifera P11B4 male)
GGCCTCGAGCCCTTCGCCCGCTCGATCTGGGACGAAGAGGTCGGCAGCCG
GCCGAACCTGCGACTCCTGGGCAGCTCCGGACGCATCCTGATGCGCGACA
CGCGGGCCAAGCTGGACGAGATGCTGGGTCTGCTCGAGGAGCTCGACCGC
CCGTCGCCGCAGCTCGAGCTGACCTGCTACGTGCTGCGCGGCACCGACAC
GCCCGGCGACAGCGGCCTGCCCGCCGCCCTGACCGACAACCTGAGCCGGC
TGGTGCCGTTCGAAGGCTTCGAGCTGGCCACGATGGGCATCGTGCGCACC
GGCGCGGACTACGCGGGCACCGGGCTGTCGATGGACATGGAGGGCTCGGA
CGAGTCCTTCTCGTTGAGCGCGCGGTTGACCGCGTTCGACGACTCGACGG
AGGGCCGCGAAGTGCTGACGATCCGCGACTGCCGGATGATGCGCGTCCAT
GACGGCGTCACCGAGCTGTTCAAGACCGACACGTCGATCGTCGGCGGCGA
GTACGCGGTGCTCGGCGCGACCGGCAGCACGCCGGTCTTCGTGGTGCTGC
GC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig117319:5..556-

>mRNA_M-pyrifera_M_contig117319.3583.1 ID=mRNA_M-pyrifera_M_contig117319.3583.1|Name=mRNA_M-pyrifera_M_contig117319.3583.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1104bp|location=Sequence derived from alignment at M-pyrifera_M_contig117319:5..556- (Macrocystis pyrifera P11B4 male)
GGCCTCGAGCCCTTCGCCCGCTCGATCTGGGACGAAGAGGTCGGCAGCCG
GCCGAACCTGCGACTCCTGGGCAGCTCCGGACGCATCCTGATGCGCGACA
CGCGGGCCAAGCTGGACGAGATGCTGGGTCTGCTCGAGGAGCTCGACCGC
CCGTCGCCGCAGCTCGAGCTGACCTGCTACGTGCTGCGCGGCACCGACAC
GCCCGGCGACAGCGGCCTGCCCGCCGCCCTGACCGACAACCTGAGCCGGC
TGGTGCCGTTCGAAGGCTTCGAGCTGGCCACGATGGGCATCGTGCGCACC
GGCGCGGACTACGCGGGCACCGGGCTGTCGATGGACATGGAGGGCTCGGA
CGAGTCCTTCTCGTTGAGCGCGCGGTTGACCGCGTTCGACGACTCGACGG
AGGGCCGCGAAGTGCTGACGATCCGCGACTGCCGGATGATGCGCGTCCAT
GACGGCGTCACCGAGCTGTTCAAGACCGACACGTCGATCGTCGGCGGCGA
GTACGCGGTGCTCGGCGCGACCGGCAGCACGCCGGTCTTCGTGGTGCTGC
GCGGCCTCGAGCCCTTCGCCCGCTCGATCTGGGACGAAGAGGTCGGCAGC
CGGCCGAACCTGCGACTCCTGGGCAGCTCCGGACGCATCCTGATGCGCGA
CACGCGGGCCAAGCTGGACGAGATGCTGGGTCTGCTCGAGGAGCTCGACC
GCCCGTCGCCGCAGCTCGAGCTGACCTGCTACGTGCTGCGCGGCACCGAC
ACGCCCGGCGACAGCGGCCTGCCCGCCGCCCTGACCGACAACCTGAGCCG
GCTGGTGCCGTTCGAAGGCTTCGAGCTGGCCACGATGGGCATCGTGCGCA
CCGGCGCGGACTACGCGGGCACCGGGCTGTCGATGGACATGGAGGGCTCG
GACGAGTCCTTCTCGTTGAGCGCGCGGTTGACCGCGTTCGACGACTCGAC
GGAGGGCCGCGAAGTGCTGACGATCCGCGACTGCCGGATGATGCGCGTCC
ATGACGGCGTCACCGAGCTGTTCAAGACCGACACGTCGATCGTCGGCGGC
GAGTACGCGGTGCTCGGCGCGACCGGCAGCACGCCGGTCTTCGTGGTGCT
GCGC
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