mRNA_M-pyrifera_M_contig117263.3570.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig117263.3570.1
Unique NamemRNA_M-pyrifera_M_contig117263.3570.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig117263.3570.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig117263contigM-pyrifera_M_contig117263:200..538 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size285
Cds size285
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815690.1465364-CDS-M-pyrifera_M_contig117263:199..2441622815690.1465364-CDS-M-pyrifera_M_contig117263:199..244Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117263 200..244 +
1692277523.4049277-CDS-M-pyrifera_M_contig117263:199..2441692277523.4049277-CDS-M-pyrifera_M_contig117263:199..244Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117263 200..244 +
1622815690.1596143-CDS-M-pyrifera_M_contig117263:298..5381622815690.1596143-CDS-M-pyrifera_M_contig117263:298..538Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117263 299..538 +
1692277523.4134684-CDS-M-pyrifera_M_contig117263:298..5381692277523.4134684-CDS-M-pyrifera_M_contig117263:298..538Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117263 299..538 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig117263.3570.1prot_M-pyrifera_M_contig117263.3570.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig117263 200..538 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig117263.3570.1

>prot_M-pyrifera_M_contig117263.3570.1 ID=prot_M-pyrifera_M_contig117263.3570.1|Name=mRNA_M-pyrifera_M_contig117263.3570.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=95bp
AEEQAQELEVLACIYQGDEMHVTQVGSAPASFCIRLSPTDAEDMVHKGAR
ITMAVQYNRRYPRAAPVISFSDPENMEPEHVEELEETVKTRVRPS
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mRNA from alignment at M-pyrifera_M_contig117263:200..538+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig117263.3570.1 ID=mRNA_M-pyrifera_M_contig117263.3570.1|Name=mRNA_M-pyrifera_M_contig117263.3570.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=339bp|location=Sequence derived from alignment at M-pyrifera_M_contig117263:200..538+ (Macrocystis pyrifera P11B4 male)
GCGGAGGAGCAGGCGCAGGAGCTGGAGGTGCTCGCCTGCATTTACGTACC
GCCTCCCCTCCCCCCGGCGAGGCCATTGCGCAGAGGCTGACGGGGGCAGC
AAGGAGACGAGATGCACGTCACGCAGGTGGGTAGCGCGCCTGCCTCGTTC
TGCATCCGCCTCTCGCCCACCGACGCAGAGGACATGGTCCACAAGGGCGC
GCGCATCACCATGGCAGTGCAGTACAACCGCCGCTACCCCCGCGCTGCCC
CGGTCATCTCCTTCTCCGACCCAGAGAACATGGAGCCTGAGCACGTCGAA
GAACTCGAGGAGACTGTCAAGACCCGAGTCCGTCCTTCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig117263:200..538+

>mRNA_M-pyrifera_M_contig117263.3570.1 ID=mRNA_M-pyrifera_M_contig117263.3570.1|Name=mRNA_M-pyrifera_M_contig117263.3570.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=570bp|location=Sequence derived from alignment at M-pyrifera_M_contig117263:200..538+ (Macrocystis pyrifera P11B4 male)
GCGGAGGAGCAGGCGCAGGAGCTGGAGGTGCTCGCCTGCATTTACGCGGA
GGAGCAGGCGCAGGAGCTGGAGGTGCTCGCCTGCATTTACCAAGGAGACG
AGATGCACGTCACGCAGGTGGGTAGCGCGCCTGCCTCGTTCTGCATCCGC
CTCTCGCCCACCGACGCAGAGGACATGGTCCACAAGGGCGCGCGCATCAC
CATGGCAGTGCAGTACAACCGCCGCTACCCCCGCGCTGCCCCGGTCATCT
CCTTCTCCGACCCAGAGAACATGGAGCCTGAGCACGTCGAAGAACTCGAG
GAGACTGTCAAGACCCGAGTCCGTCCTTCCCAAGGAGACGAGATGCACGT
CACGCAGGTGGGTAGCGCGCCTGCCTCGTTCTGCATCCGCCTCTCGCCCA
CCGACGCAGAGGACATGGTCCACAAGGGCGCGCGCATCACCATGGCAGTG
CAGTACAACCGCCGCTACCCCCGCGCTGCCCCGGTCATCTCCTTCTCCGA
CCCAGAGAACATGGAGCCTGAGCACGTCGAAGAACTCGAGGAGACTGTCA
AGACCCGAGTCCGTCCTTCC
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