mRNA_M-pyrifera_M_contig11726.3568.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig11726.3568.1
Unique NamemRNA_M-pyrifera_M_contig11726.3568.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig11726.3568.1 vs. uniprot
Match: A0A0U2UBM5_9EUGL (Cytochrome c oxidase subunit 3 n=1 Tax=Perkinsela sp. GillNOR1/I TaxID=1766904 RepID=A0A0U2UBM5_9EUGL)

HSP 1 Score: 203 bits (517), Expect = 5.290e-63
Identity = 102/162 (62.96%), Postives = 137/162 (84.57%), Query Frame = 1 
Query:    1 FIDLSIVSYSVSYLVIDFLLILICCFYYIEVVVTCAVRLGSSLGIVKRTWVSFYLYLLIETMGFLGLFAPLVSSSSS*YIIEPSALQIHTILMSTTLLLSSGYLTNIAAWALFTYQTNLIIISRLLCILVTFSFILIEYNELKTSSTSFNTDCLNCALITVE 486
            F+ LSIVSY +SYL+ D   I+ICC YYIEVVVT   RLG+S+ ++KR W+SFY+Y+LIE+MGFL LF PL +S+ + Y++EP+ALQ++TILMST +LLSSGYLTNIAAWALFTYQT +II++RLLC++  FSFILIE +EL+TS+ +FNT CL+ +++T+E
Sbjct:   35 FLFLSIVSYGISYLLFDVAFIVICCSYYIEVVVTNTTRLGASINVMKRVWLSFYMYILIESMGFLALFVPLFNSNLTCYLMEPNALQVYTILMSTAILLSSGYLTNIAAWALFTYQTYIIIVARLLCVIAAFSFILIECHELQTSTPAFNTSCLHSSIVTLE 196
[Close]
BLAST of mRNA_M-pyrifera_M_contig11726.3568.1 vs. uniprot
Match: A0A0U2IAB1_9EUGL (Cytochrome c oxidase subunit 3 n=1 Tax=Perkinsela sp. CCAP 1560/4 TaxID=1314962 RepID=A0A0U2IAB1_9EUGL)

HSP 1 Score: 202 bits (514), Expect = 1.460e-62
Identity = 104/162 (64.20%), Postives = 137/162 (84.57%), Query Frame = 1 
Query:    1 FIDLSIVSYSVSYLVIDFLLILICCFYYIEVVVTCAVRLGSSLGIVKRTWVSFYLYLLIETMGFLGLFAPLVSSSSS*YIIEPSALQIHTILMSTTLLLSSGYLTNIAAWALFTYQTNLIIISRLLCILVTFSFILIEYNELKTSSTSFNTDCLNCALITVE 486
            F+ LSI S+ +SYL++D L I +CC YYIEVVVT   RLG+ L ++KR W+SFY+Y+LIE+MGFL LF PL +S+ + Y++EP+ALQI+TILMST +LLSSGYLTNIAAWALFTYQT +II+ RLLC+L  FSFILIE++EL+TS+ +FNT+CL+ +LIT+E
Sbjct:   35 FLFLSIASHGISYLLLDVLSITVCCAYYIEVVVTHTARLGACLNMMKRVWISFYMYVLIESMGFLALFVPLFTSNLTCYVMEPNALQIYTILMSTAILLSSGYLTNIAAWALFTYQTYVIIVVRLLCVLAAFSFILIEWHELQTSTPAFNTNCLHSSLITLE 196
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11726.3568.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A0U2UBM5_9EUGL5.290e-6362.96Cytochrome c oxidase subunit 3 n=1 Tax=Perkinsela ... [more]
A0A0U2IAB1_9EUGL1.460e-6264.20Cytochrome c oxidase subunit 3 n=1 Tax=Perkinsela ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig11726contigM-pyrifera_M_contig11726:7985..8500 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size516
Cds size240
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815689.955634-UTR-M-pyrifera_M_contig11726:7984..82601622815689.955634-UTR-M-pyrifera_M_contig11726:7984..8260Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11726 7985..8260 +
1692277523.3686628-UTR-M-pyrifera_M_contig11726:7984..82601692277523.3686628-UTR-M-pyrifera_M_contig11726:7984..8260Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11726 7985..8260 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815689.971378-CDS-M-pyrifera_M_contig11726:8260..85001622815689.971378-CDS-M-pyrifera_M_contig11726:8260..8500Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11726 8261..8500 +
1692277523.380768-CDS-M-pyrifera_M_contig11726:8260..85001692277523.380768-CDS-M-pyrifera_M_contig11726:8260..8500Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11726 8261..8500 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig11726.3568.1prot_M-pyrifera_M_contig11726.3568.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig11726 8261..8500 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig11726.3568.1

>prot_M-pyrifera_M_contig11726.3568.1 ID=prot_M-pyrifera_M_contig11726.3568.1|Name=mRNA_M-pyrifera_M_contig11726.3568.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=80bp
MSTTLLLSSGYLTNIAAWALFTYQTNLIIISRLLCILVTFSFILIEYNEL
KTSSTSFNTDCLNCALITVEASRGGGVGG*
back to top

mRNA from alignment at M-pyrifera_M_contig11726:7985..8500+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig11726.3568.1 ID=mRNA_M-pyrifera_M_contig11726.3568.1|Name=mRNA_M-pyrifera_M_contig11726.3568.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=516bp|location=Sequence derived from alignment at M-pyrifera_M_contig11726:7985..8500+ (Macrocystis pyrifera P11B4 male)
TTCATTGACTTGTCGATTGTTAGTTATAGTGTATCTTATTTAGTTATTGA
CTTTTTATTAATTTTAATTTGTTGTTTTTATTATATCGAAGTAGTAGTCA
CGTGCGCCGTGCGTTTAGGCTCAAGCCTCGGTATAGTAAAACGAACTTGG
GTCTCATTTTACTTATACCTCTTAATTGAAACTATGGGATTTTTAGGGCT
TTTCGCCCCTTTAGTTTCATCTAGTTCGTCTTGATATATAATAGAACCCA
GTGCTCTTCAAATTCATACTATACTAATGAGTACTACGTTGTTACTTAGT
TCCGGATACTTAACTAATATCGCAGCTTGGGCTCTATTTACATATCAAAC
TAATTTAATTATCATTAGTAGACTCTTATGCATTTTAGTAACTTTTAGTT
TTATACTTATAGAATACAATGAACTAAAAACTTCGTCCACTTCATTTAAT
ACCGATTGTCTAAATTGTGCCTTGATTACCGTGGAAGCCAGCAGGGGGGG
TGGGGTTGGAGGGTAG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig11726:7985..8500+

>mRNA_M-pyrifera_M_contig11726.3568.1 ID=mRNA_M-pyrifera_M_contig11726.3568.1|Name=mRNA_M-pyrifera_M_contig11726.3568.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=480bp|location=Sequence derived from alignment at M-pyrifera_M_contig11726:7985..8500+ (Macrocystis pyrifera P11B4 male)
ATGAGTACTACGTTGTTACTTAGTTCCGGATACTTAACTAATATCGCAGC
TTGGGCTCTATTTACATATCAAACTAATTTAATTATCATTAGTAGACTCT
TATGCATTTTAGTAACTTTTAGTTTTATACTTATAGAATACAATGAACTA
AAAACTTCGTCCACTTCATTTAATACCGATTGTCTAAATTGTGCCTTGAT
TACCGTGGAAGCCAGCAGGGGGGGTGGGGTTGGAGGGTAGATGAGTACTA
CGTTGTTACTTAGTTCCGGATACTTAACTAATATCGCAGCTTGGGCTCTA
TTTACATATCAAACTAATTTAATTATCATTAGTAGACTCTTATGCATTTT
AGTAACTTTTAGTTTTATACTTATAGAATACAATGAACTAAAAACTTCGT
CCACTTCATTTAATACCGATTGTCTAAATTGTGCCTTGATTACCGTGGAA
GCCAGCAGGGGGGGTGGGGTTGGAGGGTAG
back to top