mRNA_M-pyrifera_M_contig11725.3564.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig11725.3564.1
Unique NamemRNA_M-pyrifera_M_contig11725.3564.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig11725.3564.1 vs. uniprot
Match: D7FMV5_ECTSI (Serine/threonine protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMV5_ECTSI)

HSP 1 Score: 149 bits (375), Expect = 4.430e-40
Identity = 66/88 (75.00%), Postives = 80/88 (90.91%), Query Frame = 1 
Query:    1 RWMAPEVIRHEPYKQSADVYSFGVVLWEVVTRRQPFEGWTPIQAAFAVARQGLRPQLPHSAPPALAALIRRCWHPTPDVRPSFAQVRT 264
            RWMAPEVIRHEPY Q+ADVYSFGVVLW+++ R+QPF+G TP+QAAF+VARQGLRPQ+P SAP A+A LIRRCWH +PD RPSF+Q+R+
Sbjct:  567 RWMAPEVIRHEPYSQAADVYSFGVVLWQILARKQPFKGLTPLQAAFSVARQGLRPQIPPSAPLAVARLIRRCWHRSPDSRPSFSQIRS 654
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BLAST of mRNA_M-pyrifera_M_contig11725.3564.1 vs. uniprot
Match: A0A6H5KIL9_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIL9_9PHAE)

HSP 1 Score: 140 bits (353), Expect = 7.740e-37
Identity = 63/88 (71.59%), Postives = 75/88 (85.23%), Query Frame = 1 
Query:    1 RWMAPEVIRHEPYKQSADVYSFGVVLWEVVTRRQPFEGWTPIQAAFAVARQGLRPQLPHSAPPALAALIRRCWHPTPDVRPSFAQVRT 264
            RWMAPEVIRHEPY Q+ADVYSFGVVLW++V R+QPF+G TP+QAAF+VARQGLRPQ+P S     A LIRRCWH +P  RPSF+Q+R+
Sbjct:  726 RWMAPEVIRHEPYSQAADVYSFGVVLWQIVARKQPFKGLTPLQAAFSVARQGLRPQIPPSXXXXXARLIRRCWHRSPHSRPSFSQIRS 813
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BLAST of mRNA_M-pyrifera_M_contig11725.3564.1 vs. uniprot
Match: A0A7S2UYR0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UYR0_9STRA)

HSP 1 Score: 131 bits (330), Expect = 3.040e-36
Identity = 59/86 (68.60%), Postives = 69/86 (80.23%), Query Frame = 1 
Query:    1 RWMAPEVIRHEPYKQSADVYSFGVVLWEVVTRRQPFEGWTPIQAAFAVARQGLRPQLPHSAPPALAALIRRCWHPTPDVRPSFAQV 258
            RWMAPEVIRHEPY  +ADVYSFG+VLWE++TR QP+ G +PIQAAFAVARQG RP LPH  P  LAAL+RRCW+    +RPSF  +
Sbjct:  138 RWMAPEVIRHEPYSTAADVYSFGIVLWELLTRDQPYRGLSPIQAAFAVARQGFRPPLPHKTPSRLAALMRRCWNEDQTLRPSFMDI 223
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BLAST of mRNA_M-pyrifera_M_contig11725.3564.1 vs. uniprot
Match: A0A835ZBB1_9STRA (Putative serine/threonine protein kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBB1_9STRA)

HSP 1 Score: 134 bits (338), Expect = 1.210e-35
Identity = 61/83 (73.49%), Postives = 69/83 (83.13%), Query Frame = 1 
Query:    1 RWMAPEVIRHEPYKQSADVYSFGVVLWEVVTRRQPFEGWTPIQAAFAVARQGLRPQLPHSAPPALAALIRRCWHPTPDVRPSF 249
            RWMAPEVIRHEPY  +ADVYS+G+VLWE++ R QPFEG TPIQAAFAVAR+GLRP LP  APP LAAL+RRCW   P  RP+F
Sbjct:  367 RWMAPEVIRHEPYSAAADVYSYGIVLWELLARAQPFEGLTPIQAAFAVARKGLRPTLPPRAPPPLAALVRRCWAAQPQARPAF 449
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BLAST of mRNA_M-pyrifera_M_contig11725.3564.1 vs. uniprot
Match: A0A835YYG5_9STRA (Putative serine/threonine protein kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYG5_9STRA)

HSP 1 Score: 129 bits (324), Expect = 7.030e-34
Identity = 60/86 (69.77%), Postives = 70/86 (81.40%), Query Frame = 1 
Query:    1 RWMAPEVIRHEPYKQSADVYSFGVVLWEVVTRRQPFEGWTPIQAAFAVARQGLRPQLPHSAPPALAALIRRCWHPTPDVRPSFAQV 258
            R+MAPEVIRHEPY  +ADVYS+G+VLWE++ R QPFEG TPIQAAFAVAR+GLRP LP + PP LA L+R CW   P +RPSFA V
Sbjct:  322 RYMAPEVIRHEPYSAAADVYSYGIVLWELLARAQPFEGLTPIQAAFAVARKGLRPTLPPATPPPLAQLVRACWAADPALRPSFALV 407
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BLAST of mRNA_M-pyrifera_M_contig11725.3564.1 vs. uniprot
Match: A0A397EDT0_9STRA (Protein kinase domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397EDT0_9STRA)

HSP 1 Score: 122 bits (307), Expect = 2.250e-33
Identity = 55/86 (63.95%), Postives = 63/86 (73.26%), Query Frame = 1 
Query:    1 RWMAPEVIRHEPYKQSADVYSFGVVLWEVVTRRQPFEGWTPIQAAFAVARQGLRPQLPHSAPPALAALIRRCWHPTPDVRPSFAQV 258
            RWMAPEVI HEPY   ADVYSFGV+LWE++ + QPF+G TPIQAAFAVARQ LRP  P   P  L  L+ RCWH  P  RP+FA +
Sbjct:   90 RWMAPEVIGHEPYSAKADVYSFGVILWEMIGKDQPFKGMTPIQAAFAVARQSLRPAFPDVTPSCLRTLVNRCWHQNPADRPTFAAI 175
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BLAST of mRNA_M-pyrifera_M_contig11725.3564.1 vs. uniprot
Match: M4BAK4_HYAAE (Protein kinase domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BAK4_HYAAE)

HSP 1 Score: 120 bits (302), Expect = 3.890e-33
Identity = 55/86 (63.95%), Postives = 61/86 (70.93%), Query Frame = 1 
Query:    1 RWMAPEVIRHEPYKQSADVYSFGVVLWEVVTRRQPFEGWTPIQAAFAVARQGLRPQLPHSAPPALAALIRRCWHPTPDVRPSFAQV 258
            RWMAPEVIRHEPY   ADVYSFG+VLWE++ R QPF G TPIQAAFAVARQ +RP LP   P  +  LI  CWH  P  RP F  +
Sbjct:   45 RWMAPEVIRHEPYSTKADVYSFGIVLWELLARDQPFRGLTPIQAAFAVARQHMRPALPRQTPVMIGELIEHCWHHDPARRPDFDSI 130
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BLAST of mRNA_M-pyrifera_M_contig11725.3564.1 vs. uniprot
Match: A0A485K1T7_9STRA (Aste57867_128 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485K1T7_9STRA)

HSP 1 Score: 129 bits (324), Expect = 6.280e-33
Identity = 57/86 (66.28%), Postives = 67/86 (77.91%), Query Frame = 1 
Query:    1 RWMAPEVIRHEPYKQSADVYSFGVVLWEVVTRRQPFEGWTPIQAAFAVARQGLRPQLPHSAPPALAALIRRCWHPTPDVRPSFAQV 258
            RWMAPEVI HEPY   ADVYSFGV+LWE++ + QPF+G TPIQAAFAVARQG+RP  P + PP L AL+ +CWH  P  RP+FA V
Sbjct:  646 RWMAPEVIGHEPYSAKADVYSFGVILWEMIVKDQPFKGMTPIQAAFAVARQGMRPAFPDNTPPCLRALVDQCWHQNPHDRPTFATV 731
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BLAST of mRNA_M-pyrifera_M_contig11725.3564.1 vs. uniprot
Match: A0A397E2P1_9STRA (Protein kinase domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397E2P1_9STRA)

HSP 1 Score: 122 bits (307), Expect = 8.460e-33
Identity = 55/86 (63.95%), Postives = 63/86 (73.26%), Query Frame = 1 
Query:    1 RWMAPEVIRHEPYKQSADVYSFGVVLWEVVTRRQPFEGWTPIQAAFAVARQGLRPQLPHSAPPALAALIRRCWHPTPDVRPSFAQV 258
            RWMAPEVI HEPY   ADVYSFGV+LWE++ + QPF+G TPIQAAFAVARQ LRP  P   P  L  L+ RCWH  P  RP+FA +
Sbjct:  142 RWMAPEVIGHEPYSAKADVYSFGVILWEMIGKDQPFKGMTPIQAAFAVARQSLRPAFPDVTPSCLRTLVNRCWHQNPADRPTFAAI 227
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BLAST of mRNA_M-pyrifera_M_contig11725.3564.1 vs. uniprot
Match: F0W0U1_9STRA (Serine/threonine protein kinase putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W0U1_9STRA)

HSP 1 Score: 122 bits (307), Expect = 1.930e-31
Identity = 54/86 (62.79%), Postives = 62/86 (72.09%), Query Frame = 1 
Query:    1 RWMAPEVIRHEPYKQSADVYSFGVVLWEVVTRRQPFEGWTPIQAAFAVARQGLRPQLPHSAPPALAALIRRCWHPTPDVRPSFAQV 258
            RWMAPEVIRHEPY   ADVYSFG+VLWE++ + QPF G TPIQAAFAVARQ  RP LP   P  LA  +  CWH  P  RP+F+ +
Sbjct:  308 RWMAPEVIRHEPYSSKADVYSFGIVLWEIIAKDQPFRGMTPIQAAFAVARQHARPALPKHTPAKLAEFVEYCWHQDPQRRPAFSDI 393
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11725.3564.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FMV5_ECTSI4.430e-4075.00Serine/threonine protein kinase n=1 Tax=Ectocarpus... [more]
A0A6H5KIL9_9PHAE7.740e-3771.59Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A7S2UYR0_9STRA3.040e-3668.60Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A835ZBB1_9STRA1.210e-3573.49Putative serine/threonine protein kinase n=1 Tax=T... [more]
A0A835YYG5_9STRA7.030e-3469.77Putative serine/threonine protein kinase n=1 Tax=T... [more]
A0A397EDT0_9STRA2.250e-3363.95Protein kinase domain-containing protein (Fragment... [more]
M4BAK4_HYAAE3.890e-3363.95Protein kinase domain-containing protein n=1 Tax=H... [more]
A0A485K1T7_9STRA6.280e-3366.28Aste57867_128 protein n=1 Tax=Aphanomyces stellatu... [more]
A0A397E2P1_9STRA8.460e-3363.95Protein kinase domain-containing protein (Fragment... [more]
F0W0U1_9STRA1.930e-3162.79Serine/threonine protein kinase putative n=1 Tax=A... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig11725contigM-pyrifera_M_contig11725:6429..9055 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score143.7
Seed ortholog evalue4.1e-32
Seed eggNOG ortholog2880.D7FMV5
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein kinase activity
EggNOG OGsCOG0515@1,KOG0192@2759
Ec32 ortholog descriptionserine/threonine protein kinase
Ec32 orthologEc-09_002640.1
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size264
Cds size258
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig11725.3564.1prot_M-pyrifera_M_contig11725.3564.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig11725 6429..9049 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815689.757843-CDS-M-pyrifera_M_contig11725:6428..66251622815689.757843-CDS-M-pyrifera_M_contig11725:6428..6625Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11725 6429..6625 -
1692277523.2865832-CDS-M-pyrifera_M_contig11725:6428..66251692277523.2865832-CDS-M-pyrifera_M_contig11725:6428..6625Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11725 6429..6625 -
1622815689.7684877-CDS-M-pyrifera_M_contig11725:8988..90491622815689.7684877-CDS-M-pyrifera_M_contig11725:8988..9049Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11725 8989..9049 -
1692277523.2963693-CDS-M-pyrifera_M_contig11725:8988..90491692277523.2963693-CDS-M-pyrifera_M_contig11725:8988..9049Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11725 8989..9049 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815689.779953-UTR-M-pyrifera_M_contig11725:9049..90551622815689.779953-UTR-M-pyrifera_M_contig11725:9049..9055Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11725 9050..9055 -
1692277523.30426-UTR-M-pyrifera_M_contig11725:9049..90551692277523.30426-UTR-M-pyrifera_M_contig11725:9049..9055Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11725 9050..9055 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig11725.3564.1

>prot_M-pyrifera_M_contig11725.3564.1 ID=prot_M-pyrifera_M_contig11725.3564.1|Name=mRNA_M-pyrifera_M_contig11725.3564.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=86bp
MAPEVIRHEPYKQSADVYSFGVVLWEVVTRRQPFEGWTPIQAAFAVARQG
LRPQLPHSAPPALAALIRRCWHPTPDVRPSFAQVRT
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mRNA from alignment at M-pyrifera_M_contig11725:6429..9055-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig11725.3564.1 ID=mRNA_M-pyrifera_M_contig11725.3564.1|Name=mRNA_M-pyrifera_M_contig11725.3564.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=2627bp|location=Sequence derived from alignment at M-pyrifera_M_contig11725:6429..9055- (Macrocystis pyrifera P11B4 male)
AGGTGGATGGCTCCCGAGGTGATCCGCCACGAGCCCTACAAGCAATCGGC
GGACGTCTACAGTTTCGGTGAGAGGGGACGGGGGTTGGGGGGACGCCGGC
GGTTATTTTTTATGCGTGCTGTCACTCCGACCAGGAGTACAAGCACTATT
TTGGACTCTGATATCTTTTTTCTTTTCTTTTTTTCCATCCTCCGGCGGAT
TGGTAAAAATAAAGCTTAAGCTCACCACACTTCCACGTTCCAATTTCGTG
TCGTGTCAATTTATAGCCCATAGCTCCCGTTGTAACATCAGAACAGGGTG
TTGTTACCCCTGGAGTTTGGGCACGTTGACCCGCCCTGACCCCCGAGAGG
AGCAGGTGCGGTGGAGATAGCCGCCCGGGAGGTTCATCTCTCCCGGGTAG
TGTGGGATTTGCGCGAGCTCACCCACTATCAAAAACCGAGGCTATGAGGC
CTTCCACCAAACGGAGCCCAAATCACCCGTAAATTGTGCCCACAACAGGA
GTGCGGTCCTGAGGCGTTTGTTTCCTGGTGACTTGGTAATGACTTATTAA
TAGTACGAAGTATAAATATTTGGATGGAACCCCTCACGTGAGGAAGGCAG
GGGCCTCGGGAAAATTGCAGGAGCACCCGCTACCGCACGCATGCAGCTTG
TGTCTGTTGTCTGTTGGGTTATTCTTATGGTTAGTTTTGATCGAGATTCC
ACCTGTAATTAGCGTGTTGAGCTCGCACAGCGGTGCGATTGTTTTTTCAG
TGCTCGACTTTTGTAAAGCGAAAAGATTGCGCCAATGTAACGAACAAGGC
GTTTTTTCGGAAAGGTCGGGTCGAGAGAGAGCCTTGCCTTCGGAAAGCAT
AGTGTTGCTTTTATTTAGCACCCTTTTTGCCAGATTGTTCGTCATGAAAA
TTATCAAAAGCGCTGAAAAACGATCGCACCCACCCCTCTGCGGACTCAAC
GCTCTCTTTACGGCACTTGGCGTCGCTACGTACTCGCACAACTACAGTCT
GTAGTAGCGCCTTGTAATAGCGCTGTGAGCGTTCGTCAGTCAACCCGAGG
CGTGCAATGTACGTCTGTTGTGAAGGGGTTGCACTGGGGTGGATGCTTTT
CTACGATCTGTTGCGGGGGGACATACTGTAGTAATCAGAACCCACGCACG
ATGGCCCGAGAAGCCATGTGTTTTTCCTGCGTTTTCACACCATGTTTGGT
ACTGATTACTATGTTGCCCGGTAATACCATACCTGATACGTAATGATAAA
AGTGGACGGTACGTGTTGCGGTGGACACGAGAAGGAAGTTCGTCATCACA
GCAGTTCTGGCATACCGTGTCACACCATCACACGTGTGATAAGATAACAC
ACCCCCTCGAATAGTTTCAAAGCTAATGTTTTCGACGACGGGGGAGAGCG
CAAACGCCGAGCAACGCGCCTGTGGAAATTTCTCGACGAAAAAAATCTAC
GCCACAATTTTGGTGGTGTGCGCCCTCTTGAGTTGTTTTTTAGAAAATCG
GCTGTGACGTCCATATCAGGGGGGTGTGATTTTGTCACGCCTGTGATACG
GTAGCTTTGACTGGGTGGGTACCCGCGCAGCAGGATTTTTGTAACTGTCG
TCAAGTTGTATGCGTTGTATCTCGGTCGGTAGGTCGGTCGATCGGTCGCT
TCAGCCATATTGAAAAGGGTCCCTGTACAGCATATCGTGATTGTGTTGGG
ATGTCAAAGGATAATCGAGCTCGATACGATGTCCATAAACAAAAAAAGCT
AATCGAGATATACGTGGTATATACAATTTAGATATCTGAGTGCATTCGCG
GACGTTGTCGGATAGGATCTACGGTGGATGCTCTAGATGGCCTACGGTAG
GTGGTGATGTGTCCGACGTGTAGGCACTTTTCCCCTGTCTTTCGAAAGCA
CACCCTGTGTACCCTCAACGTACATCGCACACACCCTTTCAAAAGTTGGA
CATATGAGATCACGATCATGACCTGCAGTAGATAATCTATGGCACCTATA
TAGCCTGCCGTTATGAGGTGCTGTGCAGGATCTGCATACAGCACAGATCC
AACTCAGGAAACATGTCCTGCGATAGATCCTGCAGATCGTACGGCTCCCG
CCCGGCAACTTGAGCTAGATCATACAGATCATACAGATCAGGAATATTTC
TCGCACCTCGCAGGTCGTACGGCTCCCACCCGCCAACATGAGAGCTACCA
TGAAATAGATCGTAACAGATCGTAAAACATACCTGCCCGGAAGATCTAGA
TCGTCAAGTAGGAAGTGTAGGAATCGATTGTCTGTCGGACATGTGCACCC
TTTCCTTGTCTTTCGAAAGCGCGCGCTGTGTACCCTCTACACCGCGTGTA
CCCTCTTAACGTCGCATGCGGCCTTTACATGCACCGCCCTCTCCCGCCGT
AAATGCCGTGCGTGACGGCGGGTCCTGCAGGCGTGGTGTTGTGGGAGGTG
GTGACTCGGCGGCAGCCTTTCGAAGGCTGGACACCGATCCAGGCTGCGTT
TGCTGTCGCTCGTCAGGGGCTACGGCCGCAGCTTCCGCACAGCGCTCCGC
CAGCCTTGGCCGCGTTGATCCGACGCTGCTGGCACCCGACGCCCGATGTT
CGACCGAGCTTTGCCCAGGTGCGTACG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig11725:6429..9055-

>mRNA_M-pyrifera_M_contig11725.3564.1 ID=mRNA_M-pyrifera_M_contig11725.3564.1|Name=mRNA_M-pyrifera_M_contig11725.3564.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=516bp|location=Sequence derived from alignment at M-pyrifera_M_contig11725:6429..9055- (Macrocystis pyrifera P11B4 male)
ATGGCTCCCGAGGTGATCCGCCACGAGCCCTACAAGCAATCGGCGGACGT
CTACAGTTTCGATGGCTCCCGAGGTGATCCGCCACGAGCCCTACAAGCAA
TCGGCGGACGTCTACAGTTTCGGCGTGGTGTTGTGGGAGGTGGTGACTCG
GCGGCAGCCTTTCGAAGGCTGGACACCGATCCAGGCTGCGTTTGCTGTCG
CTCGTCAGGGGCTACGGCCGCAGCTTCCGCACAGCGCTCCGCCAGCCTTG
GCCGCGTTGATCCGACGCTGCTGGCACCCGACGCCCGATGTTCGACCGAG
CTTTGCCCAGGTGCGTACGGCGTGGTGTTGTGGGAGGTGGTGACTCGGCG
GCAGCCTTTCGAAGGCTGGACACCGATCCAGGCTGCGTTTGCTGTCGCTC
GTCAGGGGCTACGGCCGCAGCTTCCGCACAGCGCTCCGCCAGCCTTGGCC
GCGTTGATCCGACGCTGCTGGCACCCGACGCCCGATGTTCGACCGAGCTT
TGCCCAGGTGCGTACG
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