mRNA_M-pyrifera_M_contig117249.3563.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig117249.3563.1
Unique NamemRNA_M-pyrifera_M_contig117249.3563.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig117249.3563.1 vs. uniprot
Match: D3AWT8_POLPP (Uncharacterized protein n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3AWT8_POLPP)

HSP 1 Score: 73.2 bits (178), Expect = 5.530e-14
Identity = 25/41 (60.98%), Postives = 33/41 (80.49%), Query Frame = 1 
Query:    1 GWCGPGLRCIEHGCRICEEGVVDPRDGKRCVNGEWTYSAWA 123
            GWCG GL+CI+H C IC+EG +   DGK+C+NGEW+YS W+
Sbjct:  110 GWCGAGLKCIQHSCSICKEGSIFGNDGKQCINGEWSYSKWS 150
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BLAST of mRNA_M-pyrifera_M_contig117249.3563.1 vs. uniprot
Match: UPI001CFD9F2F (uncharacterized protein n=1 Tax=Naegleria lovaniensis TaxID=51637 RepID=UPI001CFD9F2F)

HSP 1 Score: 65.1 bits (157), Expect = 4.550e-11
Identity = 26/52 (50.00%), Postives = 32/52 (61.54%), Query Frame = 1 
Query:    1 GWCGPGLRCIEHGCRICEEGVVDPRDGKRCVNGEWTYSAWAALGYNPEAVLL 156
            GWCG GLRC++H CR C  G++D  DGK CVN  WTY       Y+P  + L
Sbjct:  141 GWCGAGLRCLQHQCRPCVTGMMDYADGKICVNDVWTYDTLQIGFYHPTVIFL 192
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BLAST of mRNA_M-pyrifera_M_contig117249.3563.1 vs. uniprot
Match: A0A6A5BR17_NAEFO (Uncharacterized protein n=1 Tax=Naegleria fowleri TaxID=5763 RepID=A0A6A5BR17_NAEFO)

HSP 1 Score: 65.1 bits (157), Expect = 6.240e-11
Identity = 27/65 (41.54%), Postives = 40/65 (61.54%), Query Frame = 1 
Query:    1 GWCGPGLRCIEHGCRICEEGVVDPRDGKRCVNGEWTYSAWAALGYNPEAVLLLVIIGLMLIKLLM 195
            GWCGPGLRC++H CR C  G++D  DGK CV+  WT+       Y+P  + L   + L+ + +L+
Sbjct:  170 GWCGPGLRCLQHTCRQCVTGMMDYADGKICVDDVWTFDTLKIGFYHPTVIFLTAFVVLVALNMLL 234
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig117249.3563.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D3AWT8_POLPP5.530e-1460.98Uncharacterized protein n=1 Tax=Polysphondylium pa... [more]
UPI001CFD9F2F4.550e-1150.00uncharacterized protein n=1 Tax=Naegleria lovanien... [more]
A0A6A5BR17_NAEFO6.240e-1141.54Uncharacterized protein n=1 Tax=Naegleria fowleri ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig117249contigM-pyrifera_M_contig117249:300..554 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score64.7
Seed ortholog evalue1.8e-08
Seed eggNOG ortholog5762.XP_002670935.1
Hectar predicted targeting categorysignal anchor
EggNOG OGs2C1Q3@1,2SWBB@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size195
Cds size195
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815689.7067323-CDS-M-pyrifera_M_contig117249:299..3901622815689.7067323-CDS-M-pyrifera_M_contig117249:299..390Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117249 300..390 -
1692277523.268504-CDS-M-pyrifera_M_contig117249:299..3901692277523.268504-CDS-M-pyrifera_M_contig117249:299..390Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117249 300..390 -
1622815689.7187614-CDS-M-pyrifera_M_contig117249:450..5541622815689.7187614-CDS-M-pyrifera_M_contig117249:450..554Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117249 451..554 -
1692277523.2779024-CDS-M-pyrifera_M_contig117249:450..5541692277523.2779024-CDS-M-pyrifera_M_contig117249:450..554Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117249 451..554 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig117249.3563.1prot_M-pyrifera_M_contig117249.3563.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig117249 300..554 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig117249.3563.1

>prot_M-pyrifera_M_contig117249.3563.1 ID=prot_M-pyrifera_M_contig117249.3563.1|Name=mRNA_M-pyrifera_M_contig117249.3563.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=65bp
GWCGPGLRCIEHGCRICEEGVVDPRDGKRCVNGEWTYSAWAALGYNPEAV
LLLVIIGLMLIKLLM
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mRNA from alignment at M-pyrifera_M_contig117249:300..554-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig117249.3563.1 ID=mRNA_M-pyrifera_M_contig117249.3563.1|Name=mRNA_M-pyrifera_M_contig117249.3563.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=255bp|location=Sequence derived from alignment at M-pyrifera_M_contig117249:300..554- (Macrocystis pyrifera P11B4 male)
GGGTGGTGTGGCCCAGGGCTTCGCTGCATCGAGCATGGCTGTCGCATCTG
CGAGGAGGGTGTTGTCGACCCAAGAGATGGCAAACGCTGTGTGAATGGGG
AATGGTAAACGATCCTCTACAGAAGGTATCTGGTCTCAATATTACATTCA
CTGACCTTGTTCAGGACATACTCTGCATGGGCAGCACTCGGCTACAATCC
CGAGGCAGTCCTCTTGCTTGTCATCATCGGATTGATGCTCATTAAGCTCC
TCATG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig117249:300..554-

>mRNA_M-pyrifera_M_contig117249.3563.1 ID=mRNA_M-pyrifera_M_contig117249.3563.1|Name=mRNA_M-pyrifera_M_contig117249.3563.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=390bp|location=Sequence derived from alignment at M-pyrifera_M_contig117249:300..554- (Macrocystis pyrifera P11B4 male)
GGGTGGTGTGGCCCAGGGCTTCGCTGCATCGAGCATGGCTGTCGCATCTG
CGAGGAGGGTGTTGTCGACCCAAGAGATGGCAAACGCTGTGTGAATGGGG
AATGGGGTGGTGTGGCCCAGGGCTTCGCTGCATCGAGCATGGCTGTCGCA
TCTGCGAGGAGGGTGTTGTCGACCCAAGAGATGGCAAACGCTGTGTGAAT
GGGGAATGGACATACTCTGCATGGGCAGCACTCGGCTACAATCCCGAGGC
AGTCCTCTTGCTTGTCATCATCGGATTGATGCTCATTAAGCTCCTCATGG
ACATACTCTGCATGGGCAGCACTCGGCTACAATCCCGAGGCAGTCCTCTT
GCTTGTCATCATCGGATTGATGCTCATTAAGCTCCTCATG
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