mRNA_M-pyrifera_M_contig117243.3562.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig117243.3562.1
Unique NamemRNA_M-pyrifera_M_contig117243.3562.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig117243.3562.1 vs. uniprot
Match: A0A8E5HUT7_USTVR (Importin N-terminal domain-containing protein n=1 Tax=Ustilaginoidea virens TaxID=1159556 RepID=A0A8E5HUT7_USTVR)

HSP 1 Score: 64.7 bits (156), Expect = 5.570e-10
Identity = 34/107 (31.78%), Postives = 60/107 (56.07%), Query Frame = 1
Query:    7 LEEAKKMPDFASYMVLIFAQLQGAE--------QQVIRSQAGVQVKQYLVRHYNTMPPEALAFYKEQILNCVGDGNEKVSNIAGVIVAEVVRSKGLAAWAGLLERLV 303
            L++AK  PD  +Y+  +F+ +Q  E          ++RS AG+ +K  +   + ++P E+L+F K  +  C+ D N ++ N AG I +EV+R  GL  W  L+ +L+
Sbjct:   36 LQQAKSSPDINNYLAYLFSSVQPPEGVQCSESDYHLVRSAAGIMLKNNVKSDWKSIPDESLSFIKLAVPMCLQDKNPQIRNYAGNIASEVIRRGGLLTWPDLIPQLL 142          
BLAST of mRNA_M-pyrifera_M_contig117243.3562.1 vs. uniprot
Match: M1WF88_CLAP2 (Related to importin beta-2 subunit (Transportin) n=1 Tax=Claviceps purpurea (strain 20.1) TaxID=1111077 RepID=M1WF88_CLAP2)

HSP 1 Score: 62.0 bits (149), Expect = 4.930e-9
Identity = 33/107 (30.84%), Postives = 58/107 (54.21%), Query Frame = 1
Query:    7 LEEAKKMPDFASYMVLIFAQLQ--------GAEQQVIRSQAGVQVKQYLVRHYNTMPPEALAFYKEQILNCVGDGNEKVSNIAGVIVAEVVRSKGLAAWAGLLERLV 303
            L++AK  PDF +Y+  +F+           G++  ++RS AG+ +K  +   + T+P E+  F +  +   + D N ++ N AG I AE++R  GL  W  LL +L+
Sbjct:   36 LQQAKNSPDFNNYLAYLFSSTHPPDGLNCNGSDYHLVRSAAGIMLKNNVKNDWKTIPEESFKFIRISVPIGLQDNNMQIRNYAGNIAAEMIRRGGLLTWPDLLPQLM 142          
BLAST of mRNA_M-pyrifera_M_contig117243.3562.1 vs. uniprot
Match: A0A7S9KKT3_EPIFF (Importin N-terminal domain-containing protein n=1 Tax=Epichloe festucae (strain Fl1) TaxID=877507 RepID=A0A7S9KKT3_EPIFF)

HSP 1 Score: 60.8 bits (146), Expect = 1.260e-8
Identity = 34/107 (31.78%), Postives = 56/107 (52.34%), Query Frame = 1
Query:    7 LEEAKKMPDFASYMVLIFAQLQGAE--------QQVIRSQAGVQVKQYLVRHYNTMPPEALAFYKEQILNCVGDGNEKVSNIAGVIVAEVVRSKGLAAWAGLLERLV 303
            L++AK  PD  +Y+  +F+  Q  E          ++RS AG+ +K  +   + T+P E+L F +  +   + D N ++ N AG I  EV+R  GL  W  LL +L+
Sbjct:   36 LQQAKNSPDINNYLAYLFSSTQPPEGLDCSETDYHLVRSAAGIMLKNNVKNEWKTIPEESLKFVRMAVPMGLQDKNVQIRNYAGNIATEVIRRGGLLTWPDLLPQLI 142          
BLAST of mRNA_M-pyrifera_M_contig117243.3562.1 vs. uniprot
Match: W7MI44_GIBM7 (Importin N-terminal domain-containing protein n=71 Tax=Fusarium TaxID=5506 RepID=W7MI44_GIBM7)

HSP 1 Score: 60.8 bits (146), Expect = 1.260e-8
Identity = 36/107 (33.64%), Postives = 58/107 (54.21%), Query Frame = 1
Query:    7 LEEAKKMPDFASYMVLIFAQ------LQGAEQQ--VIRSQAGVQVKQYLVRHYNTMPPEALAFYKEQILNCVGDGNEKVSNIAGVIVAEVVRSKGLAAWAGLLERLV 303
            L++AK  PD  +Y+  +F+       LQ +EQ   ++RS AG+ +K  +   + T+P   L   K  +  C+ D N ++ N AG I  E+VR  GL +W  LL +L+
Sbjct:   37 LQQAKNSPDINNYLAYLFSSSSPPNGLQFSEQDFHLVRSAAGIMLKNNVRTEWKTIPESNLQLIKLAVPMCLQDKNSQIRNFAGNIATEIVRRGGLLSWPELLPQLL 143          
BLAST of mRNA_M-pyrifera_M_contig117243.3562.1 vs. uniprot
Match: A0A4Q7JUF8_METCM (Importin N-terminal domain-containing protein n=14 Tax=Opisthokonta TaxID=33154 RepID=A0A4Q7JUF8_METCM)

HSP 1 Score: 58.9 bits (141), Expect = 5.960e-8
Identity = 34/107 (31.78%), Postives = 55/107 (51.40%), Query Frame = 1
Query:    7 LEEAKKMPDFASYMVLIFAQLQGAE--------QQVIRSQAGVQVKQYLVRHYNTMPPEALAFYKEQILNCVGDGNEKVSNIAGVIVAEVVRSKGLAAWAGLLERLV 303
            L++AK  PD  +Y+  +F+  Q  E          ++RS AG+ +K  +   +  +P E+L F K  +   + D N ++ N AG I  EV+R  GL  W  LL +L+
Sbjct:   36 LQQAKSSPDINNYLAYLFSSTQPPEGLQCSDSDYHLVRSAAGIMLKNNVKSEWKNIPEESLNFVKMAVPMGLQDKNAQIRNYAGNIATEVIRRGGLLTWPDLLPQLM 142          
BLAST of mRNA_M-pyrifera_M_contig117243.3562.1 vs. uniprot
Match: A0A2C5Z1V2_9HYPO (Importin N-terminal domain-containing protein n=2 Tax=Ophiocordyceps TaxID=474995 RepID=A0A2C5Z1V2_9HYPO)

HSP 1 Score: 57.4 bits (137), Expect = 2.070e-7
Identity = 37/107 (34.58%), Postives = 58/107 (54.21%), Query Frame = 1
Query:    7 LEEAKKMPDFASYMVLIFAQ------LQGAEQQ--VIRSQAGVQVKQYLVRHYNTMPPEALAFYKEQILNCVGDGNEKVSNIAGVIVAEVVRSKGLAAWAGLLERLV 303
            LE+AK  PD  +Y+  +F+       LQ +EQ   V+RS AG+ +K  +   + ++P  +L   K  +   + D N ++ N AG I  EV++  GL AW  LL RL+
Sbjct:   36 LEQAKASPDVNNYLAYLFSSPQPPDSLQCSEQDYHVVRSAAGIMLKNNVRSQWKSIPEASLQLIKLAVPLGLQDKNAQMRNFAGNIATEVIKRGGLMAWPDLLPRLL 142          
BLAST of mRNA_M-pyrifera_M_contig117243.3562.1 vs. uniprot
Match: A0A179GMR4_PURLI (Importin beta-2 subunit n=4 Tax=Purpureocillium TaxID=1052105 RepID=A0A179GMR4_PURLI)

HSP 1 Score: 56.2 bits (134), Expect = 5.280e-7
Identity = 33/107 (30.84%), Postives = 57/107 (53.27%), Query Frame = 1
Query:    7 LEEAKKMPDFASYMVLIFAQ------LQGAEQQ--VIRSQAGVQVKQYLVRHYNTMPPEALAFYKEQILNCVGDGNEKVSNIAGVIVAEVVRSKGLAAWAGLLERLV 303
            LE+AK  PD  +Y+  +F+       LQ +EQ   ++RS AG+ +K  +   + ++P  +L   K  + + + D N ++   AG I  EV++  GL  W  LL +L+
Sbjct:   36 LEQAKSSPDINNYLAYLFSSSQVPDGLQCSEQDYHLVRSAAGIMLKNNVKAEWKSIPESSLQLVKLAVPHALQDKNAQIRGFAGNIATEVIKKGGLLGWPDLLPQLL 142          
BLAST of mRNA_M-pyrifera_M_contig117243.3562.1 vs. uniprot
Match: A0A369GI85_9HYPO (Uncharacterized protein n=2 Tax=Ophiocordyceps TaxID=474995 RepID=A0A369GI85_9HYPO)

HSP 1 Score: 56.2 bits (134), Expect = 5.320e-7
Identity = 37/107 (34.58%), Postives = 56/107 (52.34%), Query Frame = 1
Query:    7 LEEAKKMPDFASYMVLIFAQ------LQGAEQQ--VIRSQAGVQVKQYLVRHYNTMPPEALAFYKEQILNCVGDGNEKVSNIAGVIVAEVVRSKGLAAWAGLLERLV 303
            LE+AK  PD  +Y+  IF+       LQ  EQ   V+RS AG+ +K  +     ++P  +L   K  +   + D N ++ N AG I  EV++  GL AW  LL +L+
Sbjct:  195 LEQAKSSPDINNYLAFIFSSANPPDGLQCGEQDYHVVRSAAGIMLKNNVKSQCKSIPEASLQLVKLAVPLGLQDKNVQIRNFAGNIATEVIKRGGLLAWPELLPQLL 301          
BLAST of mRNA_M-pyrifera_M_contig117243.3562.1 vs. uniprot
Match: A0A2S7Y6Z3_BEABA (Importin N-terminal domain-containing protein n=11 Tax=Cordycipitaceae TaxID=474943 RepID=A0A2S7Y6Z3_BEABA)

HSP 1 Score: 55.1 bits (131), Expect = 1.340e-6
Identity = 33/107 (30.84%), Postives = 54/107 (50.47%), Query Frame = 1
Query:    7 LEEAKKMPDFASYMVLIF--------AQLQGAEQQVIRSQAGVQVKQYLVRHYNTMPPEALAFYKEQILNCVGDGNEKVSNIAGVIVAEVVRSKGLAAWAGLLERLV 303
            L++AK  PD  +Y+  I         A    +E  ++RS AG+ +K  L   + T+P  +L   K  I   + D N ++ N AG +  E+V+  GL +W  LL +L+
Sbjct:   36 LKQAKGSPDINNYLAYILSSPEPPEGAAFSQSEYHLVRSAAGIMLKNNLKSDWKTIPESSLQLIKLAIPIALQDKNIQIRNFAGNVATEIVQKGGLLSWPDLLPQLI 142          
BLAST of mRNA_M-pyrifera_M_contig117243.3562.1 vs. uniprot
Match: J3PAG5_GAET3 (Transportin-2 n=2 Tax=Magnaporthaceae TaxID=81093 RepID=J3PAG5_GAET3)

HSP 1 Score: 55.1 bits (131), Expect = 1.340e-6
Identity = 31/109 (28.44%), Postives = 56/109 (51.38%), Query Frame = 1
Query:    1 QALEEAKKMPDFASYMVLIFA--------QLQGAEQQVIRSQAGVQVKQYLVRHYNTMPPEALAFYKEQILNCVGDGNEKVSNIAGVIVAEVVRSKGLAAWAGLLERLV 303
            + L +AK  PD  +Y+  IF+        Q+   +  ++RS AG+ +K  +   +  +P  +L   K+ +   + D N ++ N AG I  E++R  GL +W  LL +L+
Sbjct:   34 EMLAQAKASPDINNYLAFIFSSADSLPGLQITPGDLHLVRSAAGIMLKNNIKADFKQIPESSLDMVKQAVPIGIQDKNIQIRNFAGNIATELIRRGGLFSWPSLLPQLL 142          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig117243.3562.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A8E5HUT7_USTVR5.570e-1031.78Importin N-terminal domain-containing protein n=1 ... [more]
M1WF88_CLAP24.930e-930.84Related to importin beta-2 subunit (Transportin) n... [more]
A0A7S9KKT3_EPIFF1.260e-831.78Importin N-terminal domain-containing protein n=1 ... [more]
W7MI44_GIBM71.260e-833.64Importin N-terminal domain-containing protein n=71... [more]
A0A4Q7JUF8_METCM5.960e-831.78Importin N-terminal domain-containing protein n=14... [more]
A0A2C5Z1V2_9HYPO2.070e-734.58Importin N-terminal domain-containing protein n=2 ... [more]
A0A179GMR4_PURLI5.280e-730.84Importin beta-2 subunit n=4 Tax=Purpureocillium Ta... [more]
A0A369GI85_9HYPO5.320e-734.58Uncharacterized protein n=2 Tax=Ophiocordyceps Tax... [more]
A0A2S7Y6Z3_BEABA1.340e-630.84Importin N-terminal domain-containing protein n=11... [more]
J3PAG5_GAET31.340e-628.44Transportin-2 n=2 Tax=Magnaporthaceae TaxID=81093 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig117243contigM-pyrifera_M_contig117243:252..554 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score67.0
Seed ortholog evalue5.3e-09
Seed eggNOG ortholog28583.AMAG_12470T0
Preferred namekap104
KEGG koko:K18752
KEGG TC1.I.1
Hectar predicted targeting categorysignal peptide
GOsGO:0000060,GO:0000166,GO:0000278,GO:0000280,GO:0001882,GO:0001883,GO:0003674,GO:0005048,GO:0005215,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0005737,GO:0005819,GO:0005829,GO:0005856,GO:0005933,GO:0005934,GO:0005935,GO:0006606,GO:0006607,GO:0006610,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0007049,GO:0008104,GO:0008139,GO:0008150,GO:0008565,GO:0009987,GO:0010458,GO:0012505,GO:0015031,GO:0015630,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0017038,GO:0017076,GO:0019001,GO:0022402,GO:0030427,GO:0031090,GO:0031224,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032991,GO:0033036,GO:0033218,GO:0033365,GO:0034399,GO:0034504,GO:0034613,GO:0035639,GO:0036094,GO:0042277,GO:0042886,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0044770,GO:0044772,GO:0045184,GO:0046907,GO:0048285,GO:0051169,GO:0051170,GO:0051179,GO:0051233,GO:0051234,GO:0051641,GO:0051649,GO:0061608,GO:0070013,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0072594,GO:0072686,GO:0097159,GO:0097367,GO:0140014,GO:0140104,GO:0140142,GO:1901265,GO:1901363,GO:1903047,GO:1990023
EggNOG free text desc.Importin beta-2 subunit
EggNOG OGs38DR7@33154,3NWD3@4751,KOG2023@1,KOG2023@2759
COG Functional cat.UY
Best tax levelFungi
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009,ko03019
Exons1
Model size303
Cds size279
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815689.6646101-UTR-M-pyrifera_M_contig117243:251..2751622815689.6646101-UTR-M-pyrifera_M_contig117243:251..275Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig117243 252..275 +
1692277523.2418373-UTR-M-pyrifera_M_contig117243:251..2751692277523.2418373-UTR-M-pyrifera_M_contig117243:251..275Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig117243 252..275 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815689.675555-CDS-M-pyrifera_M_contig117243:275..5541622815689.675555-CDS-M-pyrifera_M_contig117243:275..554Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117243 276..554 +
1692277523.2534416-CDS-M-pyrifera_M_contig117243:275..5541692277523.2534416-CDS-M-pyrifera_M_contig117243:275..554Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117243 276..554 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig117243.3562.1prot_M-pyrifera_M_contig117243.3562.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig117243 276..554 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig117243.3562.1

>prot_M-pyrifera_M_contig117243.3562.1 ID=prot_M-pyrifera_M_contig117243.3562.1|Name=mRNA_M-pyrifera_M_contig117243.3562.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=93bp
MPDFASYMVLIFAQLQGAEQQVIRSQAGVQVKQYLVRHYNTMPPEALAFY
KEQILNCVGDGNEKVSNIAGVIVAEVVRSKGLAAWAGLLERLV
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mRNA from alignment at M-pyrifera_M_contig117243:252..554+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig117243.3562.1 ID=mRNA_M-pyrifera_M_contig117243.3562.1|Name=mRNA_M-pyrifera_M_contig117243.3562.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=303bp|location=Sequence derived from alignment at M-pyrifera_M_contig117243:252..554+ (Macrocystis pyrifera P11B4 male)
CAGGCACTGGAGGAGGCGAAGAAGATGCCGGACTTTGCGAGCTACATGGT GCTCATCTTCGCGCAGCTCCAGGGCGCGGAGCAGCAGGTGATCAGGAGCC AGGCTGGCGTGCAGGTGAAGCAGTACCTCGTGCGGCACTACAACACAATG CCGCCCGAGGCGCTGGCCTTCTACAAGGAGCAGATCCTCAACTGCGTGGG CGACGGCAACGAAAAGGTGAGCAACATCGCGGGCGTCATCGTGGCCGAGG TGGTGCGCAGCAAGGGCCTGGCCGCCTGGGCCGGCCTGCTGGAGCGGCTG GTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig117243:252..554+

>mRNA_M-pyrifera_M_contig117243.3562.1 ID=mRNA_M-pyrifera_M_contig117243.3562.1|Name=mRNA_M-pyrifera_M_contig117243.3562.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=558bp|location=Sequence derived from alignment at M-pyrifera_M_contig117243:252..554+ (Macrocystis pyrifera P11B4 male)
ATGCCGGACTTTGCGAGCTACATGGTGCTCATCTTCGCGCAGCTCCAGGG
CGCGGAGCAGCAGGTGATCAGGAGCCAGGCTGGCGTGCAGGTGAAGCAGT
ACCTCGTGCGGCACTACAACACAATGCCGCCCGAGGCGCTGGCCTTCTAC
AAGGAGCAGATCCTCAACTGCGTGGGCGACGGCAACGAAAAGGTGAGCAA
CATCGCGGGCGTCATCGTGGCCGAGGTGGTGCGCAGCAAGGGCCTGGCCG
CCTGGGCCGGCCTGCTGGAGCGGCTGGTGATGCCGGACTTTGCGAGCTAC
ATGGTGCTCATCTTCGCGCAGCTCCAGGGCGCGGAGCAGCAGGTGATCAG
GAGCCAGGCTGGCGTGCAGGTGAAGCAGTACCTCGTGCGGCACTACAACA
CAATGCCGCCCGAGGCGCTGGCCTTCTACAAGGAGCAGATCCTCAACTGC
GTGGGCGACGGCAACGAAAAGGTGAGCAACATCGCGGGCGTCATCGTGGC
CGAGGTGGTGCGCAGCAAGGGCCTGGCCGCCTGGGCCGGCCTGCTGGAGC
GGCTGGTG
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