mRNA_M-pyrifera_M_contig117131.3543.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig117131.3543.1
Unique NamemRNA_M-pyrifera_M_contig117131.3543.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig117131.3543.1 vs. uniprot
Match: A0A0C9RRL6_9SPER (TSA: Wollemia nobilis Ref_Wollemi_Transcript_18888_1336 transcribed RNA sequence n=2 Tax=Araucariaceae TaxID=25664 RepID=A0A0C9RRL6_9SPER)

HSP 1 Score: 55.5 bits (132), Expect = 2.040e-7
Identity = 30/63 (47.62%), Postives = 40/63 (63.49%), Query Frame = 1 
Query:    1 ESGDASCRRGFLPESKQFLVTRGVPCRERASALAEGVGAAS-----EEDAGDGWLATGFATRE 174
            ESGD S R+ +LP SKQ+L+TR VPC  RASA+ E   A       +++  DGWLAT  A ++
Sbjct:   55 ESGDPSKRKPYLPPSKQYLITRNVPCLRRASAVEEDYVATGGEYMIDDEEDDGWLATHGAPKD 117
[Close]
BLAST of mRNA_M-pyrifera_M_contig117131.3543.1 vs. uniprot
Match: A0A4D9BE58_SALSN (Ubiquitin-like-conjugating enzyme ATG3 n=1 Tax=Salvia splendens TaxID=180675 RepID=A0A4D9BE58_SALSN)

HSP 1 Score: 55.1 bits (131), Expect = 2.990e-7
Identity = 27/57 (47.37%), Postives = 37/57 (64.91%), Query Frame = 1 
Query:    1 ESGDASCRRGFLPESKQFLVTRGVPCRERASALAEGVGAAS-----EEDAGDGWLAT 156
            ESGD   R+ +LP+ KQFL+TR VPC  RA+++ E   AA      +++  DGWLAT
Sbjct:  113 ESGDPGKRKSYLPQDKQFLITRNVPCLRRAASIGEEYEAAGGEVLVDDEDNDGWLAT 169
[Close]
BLAST of mRNA_M-pyrifera_M_contig117131.3543.1 vs. uniprot
Match: A0A4D9C560_SALSN (Ubiquitin-like-conjugating enzyme ATG3 n=4 Tax=Salvia TaxID=21880 RepID=A0A4D9C560_SALSN)

HSP 1 Score: 54.7 bits (130), Expect = 3.850e-7
Identity = 28/57 (49.12%), Postives = 36/57 (63.16%), Query Frame = 1 
Query:    1 ESGDASCRRGFLPESKQFLVTRGVPCRERASALAEGVGAASEE-----DAGDGWLAT 156
            ESGD   R+ +LP+ KQFL+TR VPC  RA+++ E   AA  E     +  DGWLAT
Sbjct:   55 ESGDPGKRKSYLPQDKQFLITRNVPCLRRAASIGEEYEAAGGEVLVDNEDNDGWLAT 111
[Close]
BLAST of mRNA_M-pyrifera_M_contig117131.3543.1 vs. uniprot
Match: A0A2G9GP41_9LAMI (Protein involved in autophagocytosis during starvation n=5 Tax=asterids TaxID=71274 RepID=A0A2G9GP41_9LAMI)

HSP 1 Score: 54.3 bits (129), Expect = 5.290e-7
Identity = 28/57 (49.12%), Postives = 37/57 (64.91%), Query Frame = 1 
Query:    1 ESGDASCRRGFLPESKQFLVTRGVPCRERASALAEGVGAASEE-----DAGDGWLAT 156
            ESG+ S R+ +LP+ KQFL+TR VPC  RA+++ E   AA  E     +  DGWLAT
Sbjct:   55 ESGEPSKRKSYLPQDKQFLITRNVPCLRRAASIEEEYEAAGGEVLLDNEDNDGWLAT 111
[Close]
BLAST of mRNA_M-pyrifera_M_contig117131.3543.1 vs. uniprot
Match: A0A804L454_MUSAM (Uncharacterized protein n=3 Tax=Musa TaxID=4640 RepID=A0A804L454_MUSAM)

HSP 1 Score: 54.3 bits (129), Expect = 5.320e-7
Identity = 28/60 (46.67%), Postives = 37/60 (61.67%), Query Frame = 1 
Query:    1 ESGDASCRRGFLPESKQFLVTRGVPCRERASALAEGVGAASEE--------DAGDGWLAT 156
            E+G+ S R+ +LP+ KQ+L+TR VPC  RAS++ E   AA  E          GDGWLAT
Sbjct:   55 EAGETSKRKSYLPDDKQYLITRNVPCLRRASSMEEEYDAAGGEFLLXXXXXXXGDGWLAT 114
[Close]
BLAST of mRNA_M-pyrifera_M_contig117131.3543.1 vs. uniprot
Match: A0A642V0H7_9ASCO (Uncharacterized protein n=1 Tax=Trichomonascus ciferrii TaxID=44093 RepID=A0A642V0H7_9ASCO)

HSP 1 Score: 53.9 bits (128), Expect = 7.270e-7
Identity = 28/51 (54.90%), Postives = 32/51 (62.75%), Query Frame = 1 
Query:    4 SGDASCRRGFLPESKQFLVTRGVPCRERASALAEGVGAASEEDAGDGWLAT 156
            S   S RR FLPE KQ+LVTR VP   RASA  +G  AA EE   +GW+ T
Sbjct:   54 SAPPSKRRDFLPEDKQYLVTRHVPSHVRASAFTDGTDAADEEVDAEGWVTT 104
[Close]
BLAST of mRNA_M-pyrifera_M_contig117131.3543.1 vs. uniprot
Match: A0A0L0DCI1_THETB (Uncharacterized protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DCI1_THETB)

HSP 1 Score: 53.5 bits (127), Expect = 9.730e-7
Identity = 31/58 (53.45%), Postives = 36/58 (62.07%), Query Frame = 1 
Query:    1 ESGDASCRRGFLPESKQFLVTRGVPCRERASALA------EGVGAASEEDAGDGWLAT 156
            ESG  S  R FLPE KQFL+TR VPCRER +A+       E V     +D GDGW+AT
Sbjct:   49 ESG--STVRAFLPEDKQFLITRNVPCRERVAAIEYFDDNDELVAMDDGDDEGDGWVAT 104
[Close]
BLAST of mRNA_M-pyrifera_M_contig117131.3543.1 vs. uniprot
Match: S8DC52_9LAMI (Uncharacterized protein (Fragment) n=1 Tax=Genlisea aurea TaxID=192259 RepID=S8DC52_9LAMI)

HSP 1 Score: 53.5 bits (127), Expect = 9.950e-7
Identity = 28/68 (41.18%), Postives = 42/68 (61.76%), Query Frame = 1 
Query:    1 ESGDASCRRGFLPESKQFLVTRGVPCRERASALAEGVGAAS-----EEDAGDGWLATGFATREEGRVE 189
            ESG+ S R+ +LP+ KQFL+TR VPC  RA+++ E   AA      +++  +GWLAT    +E   +E
Sbjct:   55 ESGEPSKRKSYLPQDKQFLITRNVPCLRRAASIEEEYEAAGGEVLLDDEDNEGWLATHGLPKESKDIE 122
[Close]
BLAST of mRNA_M-pyrifera_M_contig117131.3543.1 vs. uniprot
Match: A0A022PWM9_ERYGU (Uncharacterized protein n=2 Tax=Erythranthe guttata TaxID=4155 RepID=A0A022PWM9_ERYGU)

HSP 1 Score: 53.5 bits (127), Expect = 1.050e-6
Identity = 28/57 (49.12%), Postives = 37/57 (64.91%), Query Frame = 1 
Query:    1 ESGDASCRRGFLPESKQFLVTRGVPCRERASALAEGVGAASEE-----DAGDGWLAT 156
            ESG+ S R+ +LP+ KQFL+TR VPC  RA+++ E   AA  E     +  DGWLAT
Sbjct:  161 ESGEPSKRKSYLPQDKQFLMTRNVPCLRRAASIEEEYEAAGGEVLLDNEDNDGWLAT 217
[Close]
BLAST of mRNA_M-pyrifera_M_contig117131.3543.1 vs. uniprot
Match: A0A830D0D5_9LAMI (Autophagy-related protein 3 n=1 Tax=Phtheirospermum japonicum TaxID=374723 RepID=A0A830D0D5_9LAMI)

HSP 1 Score: 53.1 bits (126), Expect = 1.440e-6
Identity = 27/57 (47.37%), Postives = 37/57 (64.91%), Query Frame = 1 
Query:    1 ESGDASCRRGFLPESKQFLVTRGVPCRERASALAEGVGAASEE-----DAGDGWLAT 156
            ESG+ + R+ +LP+ KQFL+TR VPC  RA+++ E   AA  E     +  DGWLAT
Sbjct:   55 ESGEPNKRKSYLPQDKQFLITRNVPCLRRAASIEEEYEAAGGEVLLDNEDNDGWLAT 111
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig117131.3543.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0C9RRL6_9SPER2.040e-747.62TSA: Wollemia nobilis Ref_Wollemi_Transcript_18888... [more]
A0A4D9BE58_SALSN2.990e-747.37Ubiquitin-like-conjugating enzyme ATG3 n=1 Tax=Sal... [more]
A0A4D9C560_SALSN3.850e-749.12Ubiquitin-like-conjugating enzyme ATG3 n=4 Tax=Sal... [more]
A0A2G9GP41_9LAMI5.290e-749.12Protein involved in autophagocytosis during starva... [more]
A0A804L454_MUSAM5.320e-746.67Uncharacterized protein n=3 Tax=Musa TaxID=4640 Re... [more]
A0A642V0H7_9ASCO7.270e-754.90Uncharacterized protein n=1 Tax=Trichomonascus cif... [more]
A0A0L0DCI1_THETB9.730e-753.45Uncharacterized protein n=1 Tax=Thecamonas trahens... [more]
S8DC52_9LAMI9.950e-741.18Uncharacterized protein (Fragment) n=1 Tax=Genlise... [more]
A0A022PWM9_ERYGU1.050e-649.12Uncharacterized protein n=2 Tax=Erythranthe guttat... [more]
A0A830D0D5_9LAMI1.440e-647.37Autophagy-related protein 3 n=1 Tax=Phtheirospermu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig117131contigM-pyrifera_M_contig117131:1..189 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score62.4
Seed ortholog evalue8.8e-08
Seed eggNOG ortholog3702.AT5G61500.1
Preferred nameATG3
KEGG koko:K08343
KEGG Pathwayko04136,ko04138,ko04140,ko05167,map04136,map04138,map04140,map05167
Hectar predicted targeting categoryother localisation
GOsGO:0000045,GO:0000151,GO:0000153,GO:0000422,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006914,GO:0006996,GO:0007005,GO:0007033,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0016043,GO:0016236,GO:0016740,GO:0019776,GO:0022411,GO:0022607,GO:0032991,GO:0044085,GO:0044237,GO:0044248,GO:0044424,GO:0044444,GO:0044464,GO:0044804,GO:0061726,GO:0061919,GO:0070925,GO:0071840,GO:1902494,GO:1903008,GO:1905037,GO:1990234
EggNOG free text desc.Autophagy-related protein
EggNOG OGs37NHY@33090,3GA1Z@35493,3HSJ6@3699,KOG2981@1,KOG2981@2759
COG Functional cat.O
Best tax levelBrassicales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03029,ko04121,ko04131
Exons1
Model size189
Cds size189
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815688.6764424-CDS-M-pyrifera_M_contig117131:0..1891622815688.6764424-CDS-M-pyrifera_M_contig117131:0..189Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117131 1..189 +
1692277522.752874-CDS-M-pyrifera_M_contig117131:0..1891692277522.752874-CDS-M-pyrifera_M_contig117131:0..189Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117131 1..189 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig117131.3543.1prot_M-pyrifera_M_contig117131.3543.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig117131 1..189 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig117131.3543.1

>prot_M-pyrifera_M_contig117131.3543.1 ID=prot_M-pyrifera_M_contig117131.3543.1|Name=mRNA_M-pyrifera_M_contig117131.3543.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=63bp
ESGDASCRRGFLPESKQFLVTRGVPCRERASALAEGVGAASEEDAGDGWL
ATGFATREEGRVE
back to top

mRNA from alignment at M-pyrifera_M_contig117131:1..189+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig117131.3543.1 ID=mRNA_M-pyrifera_M_contig117131.3543.1|Name=mRNA_M-pyrifera_M_contig117131.3543.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=189bp|location=Sequence derived from alignment at M-pyrifera_M_contig117131:1..189+ (Macrocystis pyrifera P11B4 male)
GAAAGTGGGGATGCAAGTTGTCGTCGCGGTTTCTTGCCGGAATCGAAGCA
GTTTCTGGTCACGCGCGGAGTGCCATGTCGAGAGCGCGCAAGTGCGTTGG
CGGAAGGGGTGGGAGCAGCGTCAGAGGAAGATGCAGGAGATGGGTGGTTG
GCAACTGGGTTTGCCACACGTGAAGAAGGGAGGGTAGAA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig117131:1..189+

>mRNA_M-pyrifera_M_contig117131.3543.1 ID=mRNA_M-pyrifera_M_contig117131.3543.1|Name=mRNA_M-pyrifera_M_contig117131.3543.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=378bp|location=Sequence derived from alignment at M-pyrifera_M_contig117131:1..189+ (Macrocystis pyrifera P11B4 male)
GAAAGTGGGGATGCAAGTTGTCGTCGCGGTTTCTTGCCGGAATCGAAGCA
GTTTCTGGTCACGCGCGGAGTGCCATGTCGAGAGCGCGCAAGTGCGTTGG
CGGAAGGGGTGGGAGCAGCGTCAGAGGAAGATGCAGGAGATGGGTGGTTG
GCAACTGGGTTTGCCACACGTGAAGAAGGGAGGGTAGAAGAAAGTGGGGA
TGCAAGTTGTCGTCGCGGTTTCTTGCCGGAATCGAAGCAGTTTCTGGTCA
CGCGCGGAGTGCCATGTCGAGAGCGCGCAAGTGCGTTGGCGGAAGGGGTG
GGAGCAGCGTCAGAGGAAGATGCAGGAGATGGGTGGTTGGCAACTGGGTT
TGCCACACGTGAAGAAGGGAGGGTAGAA
back to top