mRNA_M-pyrifera_M_contig117110.3537.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig117110.3537.1
Unique NamemRNA_M-pyrifera_M_contig117110.3537.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig117110.3537.1 vs. uniprot
Match: A0A0G4F529_VITBC (Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 2 n=3 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4F529_VITBC)

HSP 1 Score: 72.0 bits (175), Expect = 6.010e-12
Identity = 45/137 (32.85%), Postives = 72/137 (52.55%), Query Frame = 1
Query:    1 FEHVIVCKPSTSKAGNSETYLVGLNFKGCAPKLLGTLLKNVSTEWPKDLALLPKREGKLVKKTKKKKSHVFYEHCLMAAKLFAWCQRAVIQRNLGLWNK--MTREEKERWRKVKDEVAMFYLERFNPTSLDRSHRLA 405
            FE V + KPS SK GNSETY +GL +KG     L  L + V  +   D A++P+                FY+  + AA+ FA  Q   I+ NL +WN+  + + E+++ R+ K + A  ++++FN   +  S R+A
Sbjct:  323 FEEVAIVKPSMSKYGNSETYAIGLRYKGIRSVFLRQLTRAVRVDGFLDTAIIPRSWI----------PQEFYDQYVAAARQFAQWQEQTIKNNLNIWNEGGVRQNEEQQLREAKRKFAYMWMQKFNIMPISPSDRIA 449          
BLAST of mRNA_M-pyrifera_M_contig117110.3537.1 vs. uniprot
Match: A0A2P6MNW3_9EUKA (Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 2 n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6MNW3_9EUKA)

HSP 1 Score: 67.4 bits (163), Expect = 2.390e-10
Identity = 54/144 (37.50%), Postives = 78/144 (54.17%), Query Frame = 1
Query:    1 FEHVIVCKPSTSKAGNSETYLVGLNFKGCAPKLLGTLLKNVSTEWPKDLALLPKREGKLVKKTKKKKSHVFYEHCLMAAKLFAWCQRAVIQRNLGLWNKMTREEKERWRKVKDEVAMFYLERFNPT----SLDRSHRLAPTIDL 420
            F+ V VCKP TSKAGNSE Y+V   F+G     L  LL  V+   P D AL P  +  + +K +++     +E C   +K+FA  Q AV++RN+ L+  M R E+    K K  +A  +  RF  T    +L  + R+ P+IDL
Sbjct:  293 FDRVTVCKPVTSKAGNSEVYIVCKGFRGIEENYLKILLSFVADREPTDRALFPLSD--ISQKFQRE-----FEEC---SKMFAEMQEAVMKRNIRLYEGM-RGERHYIIKEKQRIAREFRMRFGLTGTSGTLRVTDRMLPSIDL 425          
BLAST of mRNA_M-pyrifera_M_contig117110.3537.1 vs. uniprot
Match: A0A1B3PD74_POLVA (Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 2 (Fragment) n=1 Tax=Polypedilum vanderplanki TaxID=319348 RepID=A0A1B3PD74_POLVA)

HSP 1 Score: 63.9 bits (154), Expect = 3.760e-9
Identity = 47/144 (32.64%), Postives = 72/144 (50.00%), Query Frame = 1
Query:    1 FEHVIVCKPSTSKAGNSETYLVGLNFK--GCAPKLLGTLLKNVSTEWPKDLAL--LPKREGKLVKKTKKKKSHVFYEHCLMAAKLFAWCQRAVIQRNLGLWNKMTREEKERWRKVKDEVAMFYLERFNPTSLDRSHRLAPTIDL 420
            F+HV + KP TSK GNSE Y++GLNFK    + + +  L+KN   E    L L  +PK                F +  + AAK F   Q +VI++NL  + K  +   ++ +  K  +   YL R+N   +++S +L   IDL
Sbjct:  267 FKHVHIFKPVTSKEGNSEVYVIGLNFKKDSISSEYINYLIKNFMKEKKSMLPLNSIPKS---------------FLKQIVDAAKYFKDLQVSVIKKNLDTFMKFDKHRYDKLKLTKKLMLQEYLRRYNMRPIEKSQKLMQGIDL 395          
BLAST of mRNA_M-pyrifera_M_contig117110.3537.1 vs. uniprot
Match: A0A3P8V5J7_CYNSE (Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 2 n=1 Tax=Cynoglossus semilaevis TaxID=244447 RepID=A0A3P8V5J7_CYNSE)

HSP 1 Score: 62.4 bits (150), Expect = 1.310e-8
Identity = 49/133 (36.84%), Postives = 65/133 (48.87%), Query Frame = 1
Query:    1 FEHVIVCKPSTSKAGNSETYLVGLNFKG--CAPKLLGTLLKNVSTEWPKDLALLPKREGKLVKKTKKKKSHVFYEHCLMAAKLFAWCQRAVIQRNLGLWNKMTREEKERWRKVKDEVAMFYLERFNPTSLDRS 393
            F  V V KP+TSKAGNSE Y+V LNF G      LL  L++N   E+    AL P    KL+ ++       F +        F   Q   I  NL L+  ++ EEK+R   ++D  A  YL+RF    L RS
Sbjct:  299 FGSVSVFKPATSKAGNSEVYIVCLNFDGKEAVRPLLSKLIRNYGPEFVDKEALFP---NKLIPES-------FLKQHFEVCSYFYTLQVETITENLRLFGNISAEEKQRLDYIRDCTAQEYLQRFQVRFLPRS 421          
BLAST of mRNA_M-pyrifera_M_contig117110.3537.1 vs. uniprot
Match: A0A7S3QRB5_DUNTE (Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 2 n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3QRB5_DUNTE)

HSP 1 Score: 61.6 bits (148), Expect = 2.520e-8
Identity = 40/97 (41.24%), Postives = 54/97 (55.67%), Query Frame = 1
Query:    1 FEHVIVCKPSTSKAGNSETYLVGLNFKGCAPKLLGTLLKNVSTEWPKDLALLPKREGKLVKKTKKKKSHVFYEHCLMAAKLFAWCQRAVIQRNLGLW 291
            F+HV V KPS SK GNSETY++G  ++G +P LL  LL +VSTE   D+       G+ V       S  F     +AA  FA  QR +I+ N+ L+
Sbjct:  299 FDHVAVTKPSPSKPGNSETYVIGKGYRGASPDLLSLLLHHVSTE---DMFKSRAMFGQEVLG-----SSSFMRSAELAASAFAAVQRDIIEENIQLY 387          
BLAST of mRNA_M-pyrifera_M_contig117110.3537.1 vs. uniprot
Match: A0A2P6N3I0_9EUKA (Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 2 n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6N3I0_9EUKA)

HSP 1 Score: 60.8 bits (146), Expect = 4.610e-8
Identity = 42/140 (30.00%), Postives = 70/140 (50.00%), Query Frame = 1
Query:    1 FEHVIVCKPSTSKAGNSETYLVGLNFKGCAPKLLGTLLKNVSTEWPKDLALLPKREGKLVKKTKKKKSHVFYEHCLMAAKLFAWCQRAVIQRNLGLWNKMTREEKERWRKVKDEVAMFYLERFNPTSLDRSHRLAPTIDL 420
            F  VI+CKP+TSKA NSE Y+VG +F+G + + L TLL  VS+      +L  + +              F E  +  +K+ +  Q AV++R++ L++   R+EK      K  +A  +  RF    L +   +  ++ L
Sbjct:  317 FRKVIICKPATSKAANSEIYIVGKDFQGISQEYLDTLLSFVSSTGVPGKSLFYREDI----------PQAFVEQFIRCSKMMSRIQEAVLKRSMSLFHDF-RDEKRYITPEKHRIARDFPRRFRIRDLRQEEHIISSLSL 445          
BLAST of mRNA_M-pyrifera_M_contig117110.3537.1 vs. uniprot
Match: A0A8C5I2V2_9TELE (Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 2 n=1 Tax=Gouania willdenowi TaxID=441366 RepID=A0A8C5I2V2_9TELE)

HSP 1 Score: 59.3 bits (142), Expect = 1.560e-7
Identity = 47/133 (35.34%), Postives = 68/133 (51.13%), Query Frame = 1
Query:    1 FEHVIVCKPSTSKAGNSETYLVGLNF--KGCAPKLLGTLLKNVSTEWPKDLALLPKREGKLVKKTKKKKSHVFYEHCLMAAKLFAWCQRAVIQRNLGLWNKMTREEKERWRKVKDEVAMFYLERFNPTSLDRS 393
            F  V V KP+TSKAGNSE Y+V LN+  K     LL  L++N      +  AL P     L+ ++ +K+    Y +       F   Q   I  NL L+  M+ E+++R   ++D VA  YL+RF  + L RS
Sbjct:  300 FSSVSVFKPATSKAGNSEVYVVCLNYDNKEAVKPLLSKLIRNYGPNIAEREALFP---SSLIPESFQKQHEDMYSY-------FHTMQVETITENLRLFEGMSAEQRQRLDLIRDCVAYEYLQRFQVSFLPRS 422          
BLAST of mRNA_M-pyrifera_M_contig117110.3537.1 vs. uniprot
Match: UPI00189B06FF (cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 2 n=1 Tax=Nematolebias whitei TaxID=451745 RepID=UPI00189B06FF)

HSP 1 Score: 58.9 bits (141), Expect = 2.120e-7
Identity = 50/135 (37.04%), Postives = 68/135 (50.37%), Query Frame = 1
Query:    1 FEHVIVCKPSTSKAGNSETYLVGLNFKG--CAPKLLGTLLKNVSTEWPKDLALLPKREGKLVKKT--KKKKSHVFYEHCLMAAKLFAWCQRAVIQRNLGLWNKMTREEKERWRKVKDEVAMFYLERFNPTSLDRS 393
            F  V V KP+TSKAGNSE Y+V LN+ G      LL  L+++   +     ALLP     L+ ++  K+ +    Y H L         Q   I  NL L+  MT E+++R   V+D VA  YL RF  + L RS
Sbjct:  302 FHSVSVFKPATSKAGNSEVYVVCLNYDGKEAVRPLLSKLIRSYGPQLADREALLP---SSLIPESFLKQHEEVCSYFHSL---------QVGTITENLRLFGGMTTEQRQRLEHVRDCVAQEYLHRFQVSFLPRS 424          
BLAST of mRNA_M-pyrifera_M_contig117110.3537.1 vs. uniprot
Match: A0A3Q3A6E9_KRYMA (Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 2 n=1 Tax=Kryptolebias marmoratus TaxID=37003 RepID=A0A3Q3A6E9_KRYMA)

HSP 1 Score: 58.5 bits (140), Expect = 2.890e-7
Identity = 45/133 (33.83%), Postives = 66/133 (49.62%), Query Frame = 1
Query:    1 FEHVIVCKPSTSKAGNSETYLVGLNFKG--CAPKLLGTLLKNVSTEWPKDLALLPKREGKLVKKTKKKKSHVFYEHCLMAAKLFAWCQRAVIQRNLGLWNKMTREEKERWRKVKDEVAMFYLERFNPTSLDRS 393
            F  V V KP+TSKAGNSE Y+V L++ G      +L  L+++   +     ALLP     L+ ++       F E  L     F   Q   I  NL L+  +T  +++R   ++D VA  YL+RF  + L RS
Sbjct:  302 FRSVSVFKPATSKAGNSEVYVVCLDYDGKDAVRPMLSKLIRSYGPQLADREALLP---ASLIPQS-------FLEQHLEVCSYFYGLQVETITENLRLFGGVTPGQRQRLEDIRDAVAQLYLQRFQVSFLPRS 424          
BLAST of mRNA_M-pyrifera_M_contig117110.3537.1 vs. uniprot
Match: A0A1B3PDM5_9DIPT (Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 2 (Fragment) n=1 Tax=Polypedilum nubifer TaxID=54969 RepID=A0A1B3PDM5_9DIPT)

HSP 1 Score: 58.2 bits (139), Expect = 3.790e-7
Identity = 46/137 (33.58%), Postives = 68/137 (49.64%), Query Frame = 1
Query:    1 FEHVIVCKPSTSKAGNSETYLVGLNFKG---CAPKLLGTLLKNVSTEWPKDLALLPKREGKLVKKTKKKKSHVFYEHCLMAAKLFAWCQRAVIQRNLGLWNKMTREEKERWRKVKDEVAMFYLERFNPTSLDRSHRL 402
            FE V + KPSTSK GNSE Y++ LNF+        L+  LLKN             KREGK +        H F +    AA+ F   Q AVI+ N+  + K  + E ER + +K ++   Y++ +   ++D S +L
Sbjct:  268 FEQVHIFKPSTSKEGNSEVYVICLNFRRNLVSNTNLIEHLLKNF------------KREGKSMLPLSAI-PHDFLDQVTNAARFFMNQQVAVIENNIRTFRKYDKREYERIKMIKFQMVEEYIKLYRMQAIDESQKL 391          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig117110.3537.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0G4F529_VITBC6.010e-1232.85Cap-specific mRNA (nucleoside-2'-O-)-methyltransfe... [more]
A0A2P6MNW3_9EUKA2.390e-1037.50Cap-specific mRNA (nucleoside-2'-O-)-methyltransfe... [more]
A0A1B3PD74_POLVA3.760e-932.64Cap-specific mRNA (nucleoside-2'-O-)-methyltransfe... [more]
A0A3P8V5J7_CYNSE1.310e-836.84Cap-specific mRNA (nucleoside-2'-O-)-methyltransfe... [more]
A0A7S3QRB5_DUNTE2.520e-841.24Cap-specific mRNA (nucleoside-2'-O-)-methyltransfe... [more]
A0A2P6N3I0_9EUKA4.610e-830.00Cap-specific mRNA (nucleoside-2'-O-)-methyltransfe... [more]
A0A8C5I2V2_9TELE1.560e-735.34Cap-specific mRNA (nucleoside-2'-O-)-methyltransfe... [more]
UPI00189B06FF2.120e-737.04cap-specific mRNA (nucleoside-2'-O-)-methyltransfe... [more]
A0A3Q3A6E9_KRYMA2.890e-733.83Cap-specific mRNA (nucleoside-2'-O-)-methyltransfe... [more]
A0A1B3PDM5_9DIPT3.790e-733.58Cap-specific mRNA (nucleoside-2'-O-)-methyltransfe... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig117110contigM-pyrifera_M_contig117110:43..555 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score65.9
Seed ortholog evalue1.8e-08
Seed eggNOG ortholog244447.XP_008308462.1
Preferred nameCMTR2
KEGG rclassRC00003,RC00466
KEGG koko:K14590
KEGG ReactionR10812
Hectar predicted targeting categoryother localisation
GOsGO:0001510,GO:0003674,GO:0003824,GO:0004483,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006139,GO:0006370,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006928,GO:0007275,GO:0007424,GO:0007426,GO:0008150,GO:0008152,GO:0008168,GO:0008171,GO:0008173,GO:0008174,GO:0008757,GO:0009451,GO:0009452,GO:0009653,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016477,GO:0016556,GO:0016740,GO:0016741,GO:0032259,GO:0032501,GO:0032502,GO:0034641,GO:0035239,GO:0035295,GO:0036260,GO:0036451,GO:0040011,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0048731,GO:0048856,GO:0048870,GO:0051179,GO:0051674,GO:0060541,GO:0071704,GO:0080009,GO:0090304,GO:0097310,GO:0140098,GO:1901360
EggNOG free text desc.Cap methyltransferase 2
EggNOG OGs39DIE@33154,3BDQS@33208,3D0AT@33213,485GU@7711,497NN@7742,49THM@7898,KOG3674@1,KOG3674@2759
EC2.1.1.296
COG Functional cat.A
Best tax levelActinopterygii
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03019
Exons2
Model size420
Cds size420
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815688.427714-CDS-M-pyrifera_M_contig117110:42..2991622815688.427714-CDS-M-pyrifera_M_contig117110:42..299Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117110 43..299 -
1692277522.6499445-CDS-M-pyrifera_M_contig117110:42..2991692277522.6499445-CDS-M-pyrifera_M_contig117110:42..299Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117110 43..299 -
1622815688.4397097-CDS-M-pyrifera_M_contig117110:392..5551622815688.4397097-CDS-M-pyrifera_M_contig117110:392..555Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117110 393..555 -
1692277522.6605744-CDS-M-pyrifera_M_contig117110:392..5551692277522.6605744-CDS-M-pyrifera_M_contig117110:392..555Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117110 393..555 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig117110.3537.1prot_M-pyrifera_M_contig117110.3537.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig117110 43..555 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig117110.3537.1

>prot_M-pyrifera_M_contig117110.3537.1 ID=prot_M-pyrifera_M_contig117110.3537.1|Name=mRNA_M-pyrifera_M_contig117110.3537.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=140bp
FEHVIVCKPSTSKAGNSETYLVGLNFKGCAPKLLGTLLKNVSTEWPKDLA
LLPKREGKLVKKTKKKKSHVFYEHCLMAAKLFAWCQRAVIQRNLGLWNKM
TREEKERWRKVKDEVAMFYLERFNPTSLDRSHRLAPTIDL
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mRNA from alignment at M-pyrifera_M_contig117110:43..555-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig117110.3537.1 ID=mRNA_M-pyrifera_M_contig117110.3537.1|Name=mRNA_M-pyrifera_M_contig117110.3537.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=513bp|location=Sequence derived from alignment at M-pyrifera_M_contig117110:43..555- (Macrocystis pyrifera P11B4 male)
TTTGAACACGTCATTGTGTGCAAGCCATCTACCTCCAAAGCTGGTAATTC TGAAACTTACCTTGTTGGTCTCAATTTCAAAGGATGTGCACCAAAGCTTC TTGGAACTCTGCTCAAGAATGTCTCCACAGAATGGCCCAAAGATCTCGCT CTCCTTCCAAAACGTCTCCTCCTCGCGGGATACAACGACAAAGATGAAGA TGAAGGGGAAGAAGGAGAGGAGGAGAGTGGGGATGGAGGTGTGGGAGAGG GTGAAGGGGAGGGGAAGTTGGTGAAGAAGACGAAGAAGAAAAAGAGTCAT GTGTTTTATGAGCATTGTTTGATGGCTGCAAAGTTGTTTGCATGGTGTCA ACGAGCAGTGATTCAAAGAAACTTGGGGTTGTGGAACAAAATGACTCGTG AAGAGAAGGAACGATGGAGAAAGGTAAAAGATGAAGTTGCAATGTTCTAC TTGGAACGATTTAACCCAACGTCACTTGATCGTTCCCATCGACTTGCCCC AACAATTGACCTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig117110:43..555-

>mRNA_M-pyrifera_M_contig117110.3537.1 ID=mRNA_M-pyrifera_M_contig117110.3537.1|Name=mRNA_M-pyrifera_M_contig117110.3537.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=840bp|location=Sequence derived from alignment at M-pyrifera_M_contig117110:43..555- (Macrocystis pyrifera P11B4 male)
TTTGAACACGTCATTGTGTGCAAGCCATCTACCTCCAAAGCTGGTAATTC
TGAAACTTACCTTGTTGGTCTCAATTTCAAAGGATGTGCACCAAAGCTTC
TTGGAACTCTGCTCAAGAATGTCTCCACAGAATGGCCCAAAGATCTCGCT
CTCCTTCCAAAACTTTGAACACGTCATTGTGTGCAAGCCATCTACCTCCA
AAGCTGGTAATTCTGAAACTTACCTTGTTGGTCTCAATTTCAAAGGATGT
GCACCAAAGCTTCTTGGAACTCTGCTCAAGAATGTCTCCACAGAATGGCC
CAAAGATCTCGCTCTCCTTCCAAAACGGGAGGGGAAGTTGGTGAAGAAGA
CGAAGAAGAAAAAGAGTCATGTGTTTTATGAGCATTGTTTGATGGCTGCA
AAGTTGTTTGCATGGTGTCAACGAGCAGTGATTCAAAGAAACTTGGGGTT
GTGGAACAAAATGACTCGTGAAGAGAAGGAACGATGGAGAAAGGTAAAAG
ATGAAGTTGCAATGTTCTACTTGGAACGATTTAACCCAACGTCACTTGAT
CGTTCCCATCGACTTGCCCCAACAATTGACCTTGGGAGGGGAAGTTGGTG
AAGAAGACGAAGAAGAAAAAGAGTCATGTGTTTTATGAGCATTGTTTGAT
GGCTGCAAAGTTGTTTGCATGGTGTCAACGAGCAGTGATTCAAAGAAACT
TGGGGTTGTGGAACAAAATGACTCGTGAAGAGAAGGAACGATGGAGAAAG
GTAAAAGATGAAGTTGCAATGTTCTACTTGGAACGATTTAACCCAACGTC
ACTTGATCGTTCCCATCGACTTGCCCCAACAATTGACCTT
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