mRNA_M-pyrifera_M_contig117106.3535.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig117106.3535.1
Unique NamemRNA_M-pyrifera_M_contig117106.3535.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig117106.3535.1 vs. uniprot
Match: A0A5A8ED65_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8ED65_CAFRO)

HSP 1 Score: 68.9 bits (167), Expect = 3.480e-12
Identity = 28/60 (46.67%), Postives = 43/60 (71.67%), Query Frame = 1 
Query:    1 GNFETAVSVLDQNADGVVSFPEFTAFHFKYPTVLWPIFDLQDRLQARTLGRGTWNSIARR 180
            G+F+ A+   D +++GV++F EF   + K+P +LWP+F LQDR+Q R+LGR  W  I+RR
Sbjct:  544 GSFKQALRDFDTDSNGVITFDEFVEMNAKFPQLLWPLFQLQDRMQMRSLGRAAWTKISRR 603
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BLAST of mRNA_M-pyrifera_M_contig117106.3535.1 vs. uniprot
Match: A0A5A8CNL8_CAFRO (Uncharacterized protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CNL8_CAFRO)

HSP 1 Score: 68.9 bits (167), Expect = 3.490e-12
Identity = 28/60 (46.67%), Postives = 43/60 (71.67%), Query Frame = 1 
Query:    1 GNFETAVSVLDQNADGVVSFPEFTAFHFKYPTVLWPIFDLQDRLQARTLGRGTWNSIARR 180
            G+F+ A+   D +++GV++F EF   + K+P +LWP+F LQDR+Q R+LGR  W  I+RR
Sbjct:  576 GSFKQALRDFDTDSNGVITFDEFVEMNAKFPQLLWPLFQLQDRMQMRSLGRAAWTKISRR 635
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BLAST of mRNA_M-pyrifera_M_contig117106.3535.1 vs. uniprot
Match: A0A6G0X0P8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X0P8_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 4.730e-7
Identity = 25/60 (41.67%), Postives = 35/60 (58.33%), Query Frame = 1 
Query:    1 GNFETAVSVLDQNADGVVSFPEFTAFHFKYPTVLWPIFDLQDRLQARTLGRGTWNSIARR 180
            GNF  A+   D+  DGV++F  F   + +YP +L+P F LQ+R+Q  TLG   W  I  R
Sbjct:  219 GNFNKALKDFDKKNDGVITFEGFDLLNRRYPMILFPCFQLQERIQRATLGEKHWLRIHER 278
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BLAST of mRNA_M-pyrifera_M_contig117106.3535.1 vs. uniprot
Match: A0A418AZJ2_9STRA (EF-hand domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418AZJ2_9STRA)

HSP 1 Score: 48.1 bits (113), Expect = 4.970e-5
Identity = 20/57 (35.09%), Postives = 32/57 (56.14%), Query Frame = 1 
Query:    4 NFETAVSVLDQNADGVVSFPEFTAFHFKYPTVLWPIFDLQDRLQARTLGRGTWNSIA 174
            N   A+   D N DG V F EF   + ++PT+L+P++ LQ  ++  ++G   WN  A
Sbjct:   18 NMAAAMDKFDFNGDGKVDFREFQILNQQFPTLLYPVYRLQQSMKVHSMGEAWWNKRA 74
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BLAST of mRNA_M-pyrifera_M_contig117106.3535.1 vs. uniprot
Match: W4FPF5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FPF5_9STRA)

HSP 1 Score: 48.1 bits (113), Expect = 7.340e-5
Identity = 20/57 (35.09%), Postives = 32/57 (56.14%), Query Frame = 1 
Query:    4 NFETAVSVLDQNADGVVSFPEFTAFHFKYPTVLWPIFDLQDRLQARTLGRGTWNSIA 174
            N   A+   D N DG V F EF   + ++PT+L+P++ LQ  ++  ++G   WN  A
Sbjct:  139 NMAAAMEKFDFNGDGKVDFKEFQILNQQFPTLLYPVYRLQQSMKVHSMGESWWNRRA 195
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BLAST of mRNA_M-pyrifera_M_contig117106.3535.1 vs. uniprot
Match: A0A024TD15_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TD15_9STRA)

HSP 1 Score: 48.1 bits (113), Expect = 7.360e-5
Identity = 20/57 (35.09%), Postives = 32/57 (56.14%), Query Frame = 1 
Query:    4 NFETAVSVLDQNADGVVSFPEFTAFHFKYPTVLWPIFDLQDRLQARTLGRGTWNSIA 174
            N   A+   D N DG V F EF   + ++PT+L+P++ LQ  ++  ++G   WN  A
Sbjct:  147 NMAAAMDKFDFNGDGKVDFREFQILNQQFPTLLYPVYRLQQSMKVHSMGEAWWNKRA 203
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig117106.3535.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A5A8ED65_CAFRO3.480e-1246.67Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A0A5A8CNL8_CAFRO3.490e-1246.67Uncharacterized protein n=3 Tax=Cafeteria roenberg... [more]
A0A6G0X0P8_9STRA4.730e-741.67Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A418AZJ2_9STRA4.970e-535.09EF-hand domain-containing protein n=1 Tax=Aphanomy... [more]
W4FPF5_9STRA7.340e-535.09Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A024TD15_9STRA7.360e-535.09Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig117106contigM-pyrifera_M_contig117106:3..182 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.4
Seed ortholog evalue8.4e-08
Seed eggNOG ortholog115417.EPrPW00000022531
Hectar predicted targeting categoryother localisation
EggNOG free text desc.EF hand
EggNOG OGs1MJA7@121069,KOG0032@1,KOG0032@2759
COG Functional cat.T
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
Exons1
Model size180
Cds size180
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815688.3445983-CDS-M-pyrifera_M_contig117106:2..1821622815688.3445983-CDS-M-pyrifera_M_contig117106:2..182Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117106 3..182 +
1692277522.628684-CDS-M-pyrifera_M_contig117106:2..1821692277522.628684-CDS-M-pyrifera_M_contig117106:2..182Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117106 3..182 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig117106.3535.1prot_M-pyrifera_M_contig117106.3535.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig117106 3..182 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig117106.3535.1

>prot_M-pyrifera_M_contig117106.3535.1 ID=prot_M-pyrifera_M_contig117106.3535.1|Name=mRNA_M-pyrifera_M_contig117106.3535.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=60bp
GNFETAVSVLDQNADGVVSFPEFTAFHFKYPTVLWPIFDLQDRLQARTLG
RGTWNSIARR
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mRNA from alignment at M-pyrifera_M_contig117106:3..182+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig117106.3535.1 ID=mRNA_M-pyrifera_M_contig117106.3535.1|Name=mRNA_M-pyrifera_M_contig117106.3535.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=180bp|location=Sequence derived from alignment at M-pyrifera_M_contig117106:3..182+ (Macrocystis pyrifera P11B4 male)
GGCAACTTTGAGACTGCGGTGAGCGTCTTGGACCAGAACGCTGATGGGGT
GGTGTCCTTTCCCGAGTTCACGGCCTTCCACTTCAAGTACCCCACGGTGC
TCTGGCCCATCTTCGACCTCCAAGACCGGCTGCAGGCCAGGACACTGGGG
AGAGGCACCTGGAACTCCATCGCCAGAAGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig117106:3..182+

>mRNA_M-pyrifera_M_contig117106.3535.1 ID=mRNA_M-pyrifera_M_contig117106.3535.1|Name=mRNA_M-pyrifera_M_contig117106.3535.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=360bp|location=Sequence derived from alignment at M-pyrifera_M_contig117106:3..182+ (Macrocystis pyrifera P11B4 male)
GGCAACTTTGAGACTGCGGTGAGCGTCTTGGACCAGAACGCTGATGGGGT
GGTGTCCTTTCCCGAGTTCACGGCCTTCCACTTCAAGTACCCCACGGTGC
TCTGGCCCATCTTCGACCTCCAAGACCGGCTGCAGGCCAGGACACTGGGG
AGAGGCACCTGGAACTCCATCGCCAGAAGGGGCAACTTTGAGACTGCGGT
GAGCGTCTTGGACCAGAACGCTGATGGGGTGGTGTCCTTTCCCGAGTTCA
CGGCCTTCCACTTCAAGTACCCCACGGTGCTCTGGCCCATCTTCGACCTC
CAAGACCGGCTGCAGGCCAGGACACTGGGGAGAGGCACCTGGAACTCCAT
CGCCAGAAGG
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