mRNA_M-pyrifera_M_contig117093.3530.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig117093.3530.1
Unique NamemRNA_M-pyrifera_M_contig117093.3530.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig117093.3530.1 vs. uniprot
Match: A0A0H5R5G1_9EUKA (Uncharacterized protein n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5R5G1_9EUKA)

HSP 1 Score: 252 bits (643), Expect = 3.350e-76
Identity = 130/185 (70.27%), Postives = 149/185 (80.54%), Query Frame = 1
Query:    1 LKLEMTPLEFMCSVFPKERPGILKEHLGKTSISSSIANTRISNLSFSQRSCVIFARLTFVPPHVLILDEPTNFLDLDSVDSLISACNKFKGALIAVTHNRDFLKRTSKHFLSIVPGAFLQFKTMRAAERATYSFITAMEEGKDIDVKRAIIEHRGGGPVHTDEEQSKRSAALNAQQPKAKAEPDA 555
            L+L+MTP EFMC  FPK   G LK HL KTSIS    NTR+  LSFSQRSCVIFA+LTFVPPH+LI+DEPTNFLDLDSVDSLI+A NKF G LI VTHNRDFLKR SKHFLSIVPGAFL+F TM+AAERATYSFITA+EEG+ ID K AI+ +RGGG +HT+E  ++ +A L  QQ  AK + DA
Sbjct:  464 LQLDMTPFEFMCVSFPKANQGELKNHLKKTSISDDPMNTRMRGLSFSQRSCVIFAKLTFVPPHLLIMDEPTNFLDLDSVDSLITAVNKFSGGLIVVTHNRDFLKRCSKHFLSIVPGAFLEFNTMKAAERATYSFITALEEGQLIDHKAAIMNNRGGGAIHTEEYLAESAARLTEQQRLAKEKADA 648          
BLAST of mRNA_M-pyrifera_M_contig117093.3530.1 vs. uniprot
Match: A0A3P3Y371_PLABS (Uncharacterized protein n=2 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3Y371_PLABS)

HSP 1 Score: 235 bits (599), Expect = 7.630e-70
Identity = 121/185 (65.41%), Postives = 143/185 (77.30%), Query Frame = 1
Query:    1 LKLEMTPLEFMCSVFPKERPGILKEHLGKTSISSSIANTRISNLSFSQRSCVIFARLTFVPPHVLILDEPTNFLDLDSVDSLISACNKFKGALIAVTHNRDFLKRTSKHFLSIVPGAFLQFKTMRAAERATYSFITAMEEGKDIDVKRAIIEHRGGGPVHTDEEQSKRSAALNAQQPKAKAEPDA 555
            L++ MTPLEFM   FP      LK HL KTSI     +TR+ +LSFSQRSCVIF++LT+VPPH+LI+DEPTNFLDLDSVDSLI A NKF G LI VTHNRDFLKR SKHFLSIVPGAFL+F TM+AAERATYSFI+A+EEGK +D K+AI ++RGGG +HT+E  +   A L  QQ   K + DA
Sbjct:  465 LQMHMTPLEFMVHSFPDAPVAELKSHLKKTSIGDDPMSTRMQSLSFSQRSCVIFSKLTYVPPHLLIMDEPTNFLDLDSVDSLIMATNKFTGGLIVVTHNRDFLKRCSKHFLSIVPGAFLEFPTMKAAERATYSFISALEEGKAVDFKKAIQQNRGGGAIHTEEMLAANQARLTEQQRLEKEKEDA 649          
BLAST of mRNA_M-pyrifera_M_contig117093.3530.1 vs. uniprot
Match: A0A507DP27_9FUNG (Uncharacterized protein n=1 Tax=Chytriomyces confervae TaxID=246404 RepID=A0A507DP27_9FUNG)

HSP 1 Score: 224 bits (572), Expect = 7.660e-66
Identity = 110/173 (63.58%), Postives = 139/173 (80.35%), Query Frame = 1
Query:    1 LKLEMTPLEFMCSVFPKERPGILKEHLGKTSISSSIANTRISNLSFSQRSCVIFARLTFVPPHVLILDEPTNFLDLDSVDSLISACNKFKGALIAVTHNRDFLKRTSKHFLSIVPGAFLQFKTMRAAERATYSFITAMEEGKDIDVKRAIIEHRGGGPVHTDEEQSKRSAALN 519
            L LE + L+FM   FPK+  G+LK HL +TS++ +I +TR+ NLSFSQRSCVIFA+LT+VPPH+LILDEPTNFLDL++V SLI+ACNKFKG LI VTHNRDFLKR SK FLS++PG FL+F +M++AERATYSF+ A+EEGK +D K AI ++RGGG +     QSK   A+N
Sbjct:  473 LDLEDSALDFMVKSFPKDPQGVLKSHLERTSVNDNIMHTRMKNLSFSQRSCVIFAKLTYVPPHLLILDEPTNFLDLETVGSLITACNKFKGGLIIVTHNRDFLKRCSKTFLSLIPGFFLEFDSMKSAERATYSFMQALEEGKQVDAKSAIQQNRGGGAI-----QSKEDIAIN 640          
BLAST of mRNA_M-pyrifera_M_contig117093.3530.1 vs. uniprot
Match: A0A7S4KPD1_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4KPD1_9EUKA)

HSP 1 Score: 222 bits (566), Expect = 4.790e-65
Identity = 108/155 (69.68%), Postives = 127/155 (81.94%), Query Frame = 1
Query:    1 LKLEMTPLEFMCSVFPKERPGILKEHLGKTSISSSIANTRISNLSFSQRSCVIFARLTFVPPHVLILDEPTNFLDLDSVDSLISACNKFKGALIAVTHNRDFLKRTSKHFLSIVPGAFLQFKTMRAAERATYSFITAMEEGKDIDVKRAIIEHRG 465
            LK+ M+P+EFMC+ FP+   G LK HL +TSI  S ANT I NLS+SQRSCVIFA+LTF PPH+LI+DEPTNFLDLDSVDSLI A NKF G LI VTHNRDFL+R SK+FLSIVPG F +   MR+AERATYSFI+AMEEG+ ID K AI+++RG
Sbjct:  462 LKMNMSPIEFMCTSFPEANKGNLKTHLERTSIGESTANTAIKNLSYSQRSCVIFAKLTFYPPHLLIMDEPTNFLDLDSVDSLIKAANKFSGGLIVVTHNRDFLRRCSKNFLSIVPGQFQELADMRSAERATYSFISAMEEGRAIDAKSAIVQNRG 616          
BLAST of mRNA_M-pyrifera_M_contig117093.3530.1 vs. uniprot
Match: A0A7S0PYL4_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0PYL4_9EUKA)

HSP 1 Score: 168 bits (426), Expect = 1.150e-50
Identity = 79/119 (66.39%), Postives = 99/119 (83.19%), Query Frame = 1
Query:  127 NLSFSQRSCVIFARLTFVPPHVLILDEPTNFLDLDSVDSLISACNKFKGALIAVTHNRDFLKRTSKHFLSIVPGAFLQFKTMRAAERATYSFITAMEEGKDIDVKRAIIEHRGGGPVHT 483
            +LSFSQRSCVIFA+LTFVPPH+LI+DEPTNFLDLDSVD+LI+A NKF GAL+ VTH+RDFL++ +  +LSI+P  FL F  M+ AER+TYSFI A+E G DID+K AI+ + GGG + T
Sbjct:    2 DLSFSQRSCVIFAKLTFVPPHLLIMDEPTNFLDLDSVDALIAATNKFTGALLVVTHSRDFLQKCASRYLSILPDQFLMFDNMKQAERSTYSFIAALESGGDIDLKAAILNNPGGGSLRT 120          
BLAST of mRNA_M-pyrifera_M_contig117093.3530.1 vs. uniprot
Match: A0A507F3D3_9FUNG (Uncharacterized protein n=1 Tax=Chytriomyces confervae TaxID=246404 RepID=A0A507F3D3_9FUNG)

HSP 1 Score: 147 bits (370), Expect = 8.570e-38
Identity = 79/147 (53.74%), Postives = 106/147 (72.11%), Query Frame = 1
Query:    1 LKLEMTPLEFMCSVFPKERPGILKEHLGKTSISSSIANTRISNLSFSQRSCVIFARLTFVPPHVLILDEPTNFLDLDSVDSLISACNKFKGALIAVTHNRDFLKRTSKHFLSIVPGAFLQFKTMRAAERATYSFITAMEE-GKDIDV 438
            L LE + L+FM    PK+  G+LK HL +TS++ ++    + NLSFSQRSCVIFA+LT+V PH+LILDEPTNFLDL++V SLI+ACNKFKG+LI               FLS++ G FL+F +M++A+RATYSF+ A+EE  KDI +
Sbjct:  389 LDLEDSALDFMVKSSPKDPQGVLKSHLERTSVNDNV----VKNLSFSQRSCVIFAKLTYVSPHLLILDEPTNFLDLETVGSLITACNKFKGSLIIT-------------FLSLILGFFLEFDSMKSAKRATYSFMQALEEVQKDIAI 518          
BLAST of mRNA_M-pyrifera_M_contig117093.3530.1 vs. uniprot
Match: A0A6V3P458_9EUKA (Hypothetical protein n=4 Tax=Chlorarachniophyceae TaxID=29197 RepID=A0A6V3P458_9EUKA)

HSP 1 Score: 144 bits (364), Expect = 9.030e-37
Identity = 71/147 (48.30%), Postives = 100/147 (68.03%), Query Frame = 1
Query:    1 LKLEMTPLEFMCSVFPK-ERPGILKEHLGKTSISSSIANTRISNLSFSQRSCVIFARLTFVPPHVLILDEPTNFLDLDSVDSLISACNKFKGALIAVTHNRDFLKRTSKHFLSIVPGAFLQFKTMRAAERATYSFITAMEEGKDIDV 438
            L L MTP E MC  FP+ ++ G L+ HL K  +   + +TR+   S  Q++ VIFA LTF  PH+LI+DEPTNFLDL++VDSLI+ACNK+ GA++ VTH+R  L      +LSI PG F  F+ +++ ERATY+FI  +E+G  + +
Sbjct:  447 LDLSMTPFEHMCKKFPEVKQQGKLRHHLKKAGMQDEMNDTRMKGFSGGQKARVIFAELTFNCPHLLIMDEPTNFLDLETVDSLIAACNKYPGAMLLVTHSRHMLHSCGNIYLSITPGRFQFFEDIKSCERATYTFINELEDGGKVKI 593          
BLAST of mRNA_M-pyrifera_M_contig117093.3530.1 vs. uniprot
Match: A0A7S0M173_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0M173_9CRYP)

HSP 1 Score: 114 bits (285), Expect = 8.540e-29
Identity = 53/99 (53.54%), Postives = 74/99 (74.75%), Query Frame = 1
Query:  142 QRSCVIFARLTFVPPHVLILDEPTNFLDLDSVDSLISACNKFKGALIAVTHNRDFLKRTSKHFLSIVPGAFLQFKTMRAAERATYSFITAMEEGKDIDV 438
            Q++ VIFA+LT+  PH+LI+DEPTNFLDL++VDSLI+ACNK+ GA++ VTH+R  L      +LSI PG F  F  +++ ERATY+FI  +EEG  + +
Sbjct:    1 QKARVIFAQLTYSCPHLLIMDEPTNFLDLETVDSLIAACNKYPGAMLLVTHSRHMLHSCGNIYLSITPGQFKFFGDIKSCERATYTFINELEEGGKVKI 99          
BLAST of mRNA_M-pyrifera_M_contig117093.3530.1 vs. uniprot
Match: A0A7S0CS93_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0CS93_9EUKA)

HSP 1 Score: 110 bits (275), Expect = 3.530e-28
Identity = 54/104 (51.92%), Postives = 74/104 (71.15%), Query Frame = 1
Query:   52 ERPGILKEHLGKTSISSSIANTRISNLSFSQRSCVIFARLTFVPPHVLILDEPTNFLDLDSVDSLISACNKFKGALIAVTHNRDFLKRTSKHFLSIVPGAFLQF 363
            ++ G LK HL K  +   +++TR+   S  Q++ VIFA+LT+  PH+LI+DEPTNFLDL+SVDSLI+ACNK+KGA++ VTH+R  L      +LSI PG F  F
Sbjct:    1 KQQGKLKPHLKKAGMQGEMSDTRMKGFSGGQKARVIFAQLTYECPHLLIMDEPTNFLDLESVDSLINACNKYKGAMLLVTHSRHMLHSCGNIYLSISPGKFQFF 104          
BLAST of mRNA_M-pyrifera_M_contig117093.3530.1 vs. uniprot
Match: A0A0L0FST5_9EUKA (ABC transporter domain-containing protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FST5_9EUKA)

HSP 1 Score: 96.3 bits (238), Expect = 5.710e-20
Identity = 52/148 (35.14%), Postives = 90/148 (60.81%), Query Frame = 1
Query:    1 LKLEMTPLEFMCSVFPKERPGILKEHLGKTSISSSIANTRISNLSFSQRSCVIFARLTFVPPHVLILDEPTNFLDLDSVDSLISACNKFKGALIAVTHNRDFLKRTSKHFLSIVPGAFLQFKTMRAAERATYSFITAMEEGKDIDVKR 444
            L L++TP+E +   FP      ++++LG+  I+S +   +I  LS  QRS V+F+ L    PH+LILDEPTN LD+++ ++L+ A  +FKGA++ VTH++ FL+  +  F ++  G    F+++  A+  +Y  +      K I+VK+
Sbjct:  324 LDLKLTPIECLRESFPDMEVSEVRKYLGRFGITSDMQMMQIGYLSGGQRSRVVFSILVKNNPHLLILDEPTNNLDMETSEALVDALKRFKGAVLVVTHDQYFLEHVATEFWAVGDGKVRSFQSLDKAKAFSYKSV------KKINVKK 465          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig117093.3530.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0H5R5G1_9EUKA3.350e-7670.27Uncharacterized protein n=1 Tax=Spongospora subter... [more]
A0A3P3Y371_PLABS7.630e-7065.41Uncharacterized protein n=2 Tax=Plasmodiophora bra... [more]
A0A507DP27_9FUNG7.660e-6663.58Uncharacterized protein n=1 Tax=Chytriomyces confe... [more]
A0A7S4KPD1_9EUKA4.790e-6569.68Hypothetical protein (Fragment) n=1 Tax=Paramoeba ... [more]
A0A7S0PYL4_9EUKA1.150e-5066.39Hypothetical protein (Fragment) n=1 Tax=Coccolithu... [more]
A0A507F3D3_9FUNG8.570e-3853.74Uncharacterized protein n=1 Tax=Chytriomyces confe... [more]
A0A6V3P458_9EUKA9.030e-3748.30Hypothetical protein n=4 Tax=Chlorarachniophyceae ... [more]
A0A7S0M173_9CRYP8.540e-2953.54Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
A0A7S0CS93_9EUKA3.530e-2851.92Hypothetical protein (Fragment) n=1 Tax=Amorphochl... [more]
A0A0L0FST5_9EUKA5.710e-2035.14ABC transporter domain-containing protein n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig117093contigM-pyrifera_M_contig117093:1..555 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score148.7
Seed ortholog evalue2.7e-33
Seed eggNOG ortholog227086.JGI_V11_55568
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ATPase activity
EggNOG OGsCOG0488@1,KOG0062@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size555
Cds size543
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815687.8504674-CDS-M-pyrifera_M_contig117093:0..5431622815687.8504674-CDS-M-pyrifera_M_contig117093:0..543Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117093 1..543 -
1692277522.3304775-CDS-M-pyrifera_M_contig117093:0..5431692277522.3304775-CDS-M-pyrifera_M_contig117093:0..543Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117093 1..543 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815687.861332-UTR-M-pyrifera_M_contig117093:543..5551622815687.861332-UTR-M-pyrifera_M_contig117093:543..555Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig117093 544..555 -
1692277522.349318-UTR-M-pyrifera_M_contig117093:543..5551692277522.349318-UTR-M-pyrifera_M_contig117093:543..555Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig117093 544..555 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig117093.3530.1prot_M-pyrifera_M_contig117093.3530.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig117093 1..543 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig117093.3530.1

>prot_M-pyrifera_M_contig117093.3530.1 ID=prot_M-pyrifera_M_contig117093.3530.1|Name=mRNA_M-pyrifera_M_contig117093.3530.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=181bp
MTPLEFMCSVFPKERPGILKEHLGKTSISSSIANTRISNLSFSQRSCVIF
ARLTFVPPHVLILDEPTNFLDLDSVDSLISACNKFKGALIAVTHNRDFLK
RTSKHFLSIVPGAFLQFKTMRAAERATYSFITAMEEGKDIDVKRAIIEHR
GGGPVHTDEEQSKRSAALNAQQPKAKAEPDA
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mRNA from alignment at M-pyrifera_M_contig117093:1..555-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig117093.3530.1 ID=mRNA_M-pyrifera_M_contig117093.3530.1|Name=mRNA_M-pyrifera_M_contig117093.3530.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=555bp|location=Sequence derived from alignment at M-pyrifera_M_contig117093:1..555- (Macrocystis pyrifera P11B4 male)
CTGAAGCTGGAGATGACCCCTCTCGAGTTCATGTGCTCAGTCTTCCCCAA GGAGAGGCCCGGCATTCTCAAGGAGCACCTCGGCAAGACCTCTATCTCAT CCAGCATTGCCAACACCAGGATTTCCAACCTGTCCTTCTCCCAGCGCTCG TGCGTTATCTTCGCACGACTCACCTTCGTGCCCCCGCACGTTCTCATTCT TGATGAGCCCACCAACTTCCTCGACCTGGATTCCGTCGATTCGCTCATCA GTGCCTGCAACAAGTTCAAGGGCGCCCTCATTGCTGTCACTCACAACCGT GACTTCCTCAAGCGCACCTCCAAGCACTTCCTTTCCATCGTGCCCGGAGC CTTCCTCCAGTTCAAGACCATGCGTGCCGCCGAGCGTGCCACCTACTCTT TCATCACCGCGATGGAGGAGGGCAAGGACATCGACGTCAAGAGGGCTATC ATCGAGCACCGTGGGGGCGGTCCCGTCCACACCGACGAGGAGCAGTCCAA GCGCAGTGCCGCCCTTAATGCCCAGCAGCCCAAGGCGAAGGCTGAGCCCG ACGCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig117093:1..555-

>mRNA_M-pyrifera_M_contig117093.3530.1 ID=mRNA_M-pyrifera_M_contig117093.3530.1|Name=mRNA_M-pyrifera_M_contig117093.3530.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1086bp|location=Sequence derived from alignment at M-pyrifera_M_contig117093:1..555- (Macrocystis pyrifera P11B4 male)
ATGACCCCTCTCGAGTTCATGTGCTCAGTCTTCCCCAAGGAGAGGCCCGG
CATTCTCAAGGAGCACCTCGGCAAGACCTCTATCTCATCCAGCATTGCCA
ACACCAGGATTTCCAACCTGTCCTTCTCCCAGCGCTCGTGCGTTATCTTC
GCACGACTCACCTTCGTGCCCCCGCACGTTCTCATTCTTGATGAGCCCAC
CAACTTCCTCGACCTGGATTCCGTCGATTCGCTCATCAGTGCCTGCAACA
AGTTCAAGGGCGCCCTCATTGCTGTCACTCACAACCGTGACTTCCTCAAG
CGCACCTCCAAGCACTTCCTTTCCATCGTGCCCGGAGCCTTCCTCCAGTT
CAAGACCATGCGTGCCGCCGAGCGTGCCACCTACTCTTTCATCACCGCGA
TGGAGGAGGGCAAGGACATCGACGTCAAGAGGGCTATCATCGAGCACCGT
GGGGGCGGTCCCGTCCACACCGACGAGGAGCAGTCCAAGCGCAGTGCCGC
CCTTAATGCCCAGCAGCCCAAGGCGAAGGCTGAGCCCGACGCCATGACCC
CTCTCGAGTTCATGTGCTCAGTCTTCCCCAAGGAGAGGCCCGGCATTCTC
AAGGAGCACCTCGGCAAGACCTCTATCTCATCCAGCATTGCCAACACCAG
GATTTCCAACCTGTCCTTCTCCCAGCGCTCGTGCGTTATCTTCGCACGAC
TCACCTTCGTGCCCCCGCACGTTCTCATTCTTGATGAGCCCACCAACTTC
CTCGACCTGGATTCCGTCGATTCGCTCATCAGTGCCTGCAACAAGTTCAA
GGGCGCCCTCATTGCTGTCACTCACAACCGTGACTTCCTCAAGCGCACCT
CCAAGCACTTCCTTTCCATCGTGCCCGGAGCCTTCCTCCAGTTCAAGACC
ATGCGTGCCGCCGAGCGTGCCACCTACTCTTTCATCACCGCGATGGAGGA
GGGCAAGGACATCGACGTCAAGAGGGCTATCATCGAGCACCGTGGGGGCG
GTCCCGTCCACACCGACGAGGAGCAGTCCAAGCGCAGTGCCGCCCTTAAT
GCCCAGCAGCCCAAGGCGAAGGCTGAGCCCGACGCC
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