mRNA_M-pyrifera_M_contig117091.3529.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig117091.3529.1
Unique NamemRNA_M-pyrifera_M_contig117091.3529.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig117091.3529.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig117091contigM-pyrifera_M_contig117091:160..513 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score64.3
Seed ortholog evalue4.1e-08
Seed eggNOG ortholog72664.XP_006398695.1
KEGG koko:K11978
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000151,GO:0000280,GO:0001101,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006259,GO:0006310,GO:0006325,GO:0006342,GO:0006355,GO:0006464,GO:0006508,GO:0006511,GO:0006725,GO:0006807,GO:0006950,GO:0006952,GO:0006996,GO:0007049,GO:0007127,GO:0007131,GO:0007140,GO:0007141,GO:0007276,GO:0007283,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009605,GO:0009607,GO:0009620,GO:0009719,GO:0009725,GO:0009737,GO:0009889,GO:0009890,GO:0009892,GO:0009894,GO:0009966,GO:0009968,GO:0009987,GO:0010029,GO:0010033,GO:0010243,GO:0010468,GO:0010498,GO:0010528,GO:0010529,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0010646,GO:0010648,GO:0016043,GO:0016458,GO:0016567,GO:0016569,GO:0016570,GO:0016574,GO:0016597,GO:0016740,GO:0019216,GO:0019219,GO:0019222,GO:0019538,GO:0019787,GO:0019941,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0023051,GO:0023057,GO:0030163,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031406,GO:0032006,GO:0032007,GO:0032446,GO:0032501,GO:0032504,GO:0032991,GO:0033522,GO:0033993,GO:0034641,GO:0035825,GO:0036094,GO:0036211,GO:0040029,GO:0042221,GO:0043161,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043177,GO:0043200,GO:0043201,GO:0043207,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044464,GO:0044703,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0048232,GO:0048285,GO:0048519,GO:0048523,GO:0048580,GO:0048583,GO:0048585,GO:0048609,GO:0050789,GO:0050793,GO:0050794,GO:0050832,GO:0050896,GO:0050994,GO:0051171,GO:0051172,GO:0051239,GO:0051252,GO:0051253,GO:0051276,GO:0051321,GO:0051603,GO:0051704,GO:0051707,GO:0051716,GO:0060255,GO:0061630,GO:0061659,GO:0061982,GO:0065007,GO:0070647,GO:0070728,GO:0070887,GO:0071229,GO:0071230,GO:0071233,GO:0071310,GO:0071417,GO:0071495,GO:0071596,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097305,GO:0098542,GO:0140013,GO:0140096,GO:1900140,GO:1901360,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902494,GO:1902531,GO:1902532,GO:1902679,GO:1903046,GO:1903506,GO:1903507,GO:1990234,GO:2000026,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.at5g02310 (e 0.0) prt6 prt6 (proteolysis 6)
EggNOG OGs37K90@33090,3GAE7@35493,3HRDH@3699,KOG1139@1,KOG1139@2759,KOG1140@1,KOG1140@2759
EC2.3.2.27
COG Functional cat.O
Best tax levelBrassicales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121
Exons1
Model size354
Cds size336
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815687.7923295-UTR-M-pyrifera_M_contig117091:159..1771622815687.7923295-UTR-M-pyrifera_M_contig117091:159..177Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig117091 160..177 +
1692277522.3085532-UTR-M-pyrifera_M_contig117091:159..1771692277522.3085532-UTR-M-pyrifera_M_contig117091:159..177Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig117091 160..177 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815687.80866-CDS-M-pyrifera_M_contig117091:177..5131622815687.80866-CDS-M-pyrifera_M_contig117091:177..513Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117091 178..513 +
1692277522.3208942-CDS-M-pyrifera_M_contig117091:177..5131692277522.3208942-CDS-M-pyrifera_M_contig117091:177..513Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117091 178..513 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig117091.3529.1prot_M-pyrifera_M_contig117091.3529.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig117091 178..513 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig117091.3529.1

>prot_M-pyrifera_M_contig117091.3529.1 ID=prot_M-pyrifera_M_contig117091.3529.1|Name=mRNA_M-pyrifera_M_contig117091.3529.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=112bp
MLGVVGRVAEERVFAGATRLDSLQREAAHWLATGELTYSQVGQKVATDVS
AHTAFAETVAKLGEFHPPAAGGVGDGYHTLRDSEWRRLSPFYPHFSENRE
RPSAEERYQAYA
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mRNA from alignment at M-pyrifera_M_contig117091:160..513+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig117091.3529.1 ID=mRNA_M-pyrifera_M_contig117091.3529.1|Name=mRNA_M-pyrifera_M_contig117091.3529.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=354bp|location=Sequence derived from alignment at M-pyrifera_M_contig117091:160..513+ (Macrocystis pyrifera P11B4 male)
ACGCGGCTGCTGTCCGCGATGCTGGGCGTGGTCGGCCGGGTGGCGGAGGA
GCGGGTGTTCGCGGGCGCGACGCGGCTGGACAGTCTGCAGCGGGAGGCGG
CGCACTGGCTGGCGACGGGCGAGCTGACGTACAGCCAGGTGGGGCAGAAG
GTGGCGACGGACGTGAGCGCGCACACTGCGTTCGCGGAGACGGTGGCGAA
GCTCGGAGAGTTCCACCCGCCGGCGGCTGGCGGGGTGGGCGACGGCTACC
ACACGCTGCGCGACAGCGAGTGGCGGCGGCTGTCGCCGTTCTACCCGCAC
TTTTCAGAGAACCGGGAGCGGCCGTCGGCGGAGGAGCGGTACCAGGCGTA
CGCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig117091:160..513+

>mRNA_M-pyrifera_M_contig117091.3529.1 ID=mRNA_M-pyrifera_M_contig117091.3529.1|Name=mRNA_M-pyrifera_M_contig117091.3529.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=672bp|location=Sequence derived from alignment at M-pyrifera_M_contig117091:160..513+ (Macrocystis pyrifera P11B4 male)
ATGCTGGGCGTGGTCGGCCGGGTGGCGGAGGAGCGGGTGTTCGCGGGCGC
GACGCGGCTGGACAGTCTGCAGCGGGAGGCGGCGCACTGGCTGGCGACGG
GCGAGCTGACGTACAGCCAGGTGGGGCAGAAGGTGGCGACGGACGTGAGC
GCGCACACTGCGTTCGCGGAGACGGTGGCGAAGCTCGGAGAGTTCCACCC
GCCGGCGGCTGGCGGGGTGGGCGACGGCTACCACACGCTGCGCGACAGCG
AGTGGCGGCGGCTGTCGCCGTTCTACCCGCACTTTTCAGAGAACCGGGAG
CGGCCGTCGGCGGAGGAGCGGTACCAGGCGTACGCGATGCTGGGCGTGGT
CGGCCGGGTGGCGGAGGAGCGGGTGTTCGCGGGCGCGACGCGGCTGGACA
GTCTGCAGCGGGAGGCGGCGCACTGGCTGGCGACGGGCGAGCTGACGTAC
AGCCAGGTGGGGCAGAAGGTGGCGACGGACGTGAGCGCGCACACTGCGTT
CGCGGAGACGGTGGCGAAGCTCGGAGAGTTCCACCCGCCGGCGGCTGGCG
GGGTGGGCGACGGCTACCACACGCTGCGCGACAGCGAGTGGCGGCGGCTG
TCGCCGTTCTACCCGCACTTTTCAGAGAACCGGGAGCGGCCGTCGGCGGA
GGAGCGGTACCAGGCGTACGCG
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