mRNA_M-pyrifera_M_contig117081.3526.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig117081.3526.1
Unique NamemRNA_M-pyrifera_M_contig117081.3526.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig117081.3526.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig117081contigM-pyrifera_M_contig117081:72..417 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size258
Cds size252
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig117081.3526.1prot_M-pyrifera_M_contig117081.3526.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig117081 78..417 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815687.6509166-UTR-M-pyrifera_M_contig117081:71..771622815687.6509166-UTR-M-pyrifera_M_contig117081:71..77Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig117081 72..77 +
1692277522.2466176-UTR-M-pyrifera_M_contig117081:71..771692277522.2466176-UTR-M-pyrifera_M_contig117081:71..77Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig117081 72..77 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815687.668015-CDS-M-pyrifera_M_contig117081:77..1971622815687.668015-CDS-M-pyrifera_M_contig117081:77..197Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117081 78..197 +
1692277522.2610393-CDS-M-pyrifera_M_contig117081:77..1971692277522.2610393-CDS-M-pyrifera_M_contig117081:77..197Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117081 78..197 +
1622815687.6874409-CDS-M-pyrifera_M_contig117081:285..4171622815687.6874409-CDS-M-pyrifera_M_contig117081:285..417Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117081 286..417 +
1692277522.2744987-CDS-M-pyrifera_M_contig117081:285..4171692277522.2744987-CDS-M-pyrifera_M_contig117081:285..417Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117081 286..417 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig117081.3526.1

>prot_M-pyrifera_M_contig117081.3526.1 ID=prot_M-pyrifera_M_contig117081.3526.1|Name=mRNA_M-pyrifera_M_contig117081.3526.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=84bp
MSAIVDSFEAVDVVLNTLKIFSRILREHFKNNTLFLQPSELLGKPEEVLL
LLQMLMPNGNVLLASSSYLRHCKRQLDTALSSK*
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mRNA from alignment at M-pyrifera_M_contig117081:72..417+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig117081.3526.1 ID=mRNA_M-pyrifera_M_contig117081.3526.1|Name=mRNA_M-pyrifera_M_contig117081.3526.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=346bp|location=Sequence derived from alignment at M-pyrifera_M_contig117081:72..417+ (Macrocystis pyrifera P11B4 male)
GTCAGCATGTCGGCAATTGTGGACTCTTTCGAAGCTGTCGACGTCGTCCT
TAACACACTGAAGATATTCTCCCGAATTCTCCGCGAGCACTTCAAGAACA
ACACGCTCTTCCTCCAACCAAGCGAGGTGCGCATACTTCGCTCACTCTTT
CGTACTTTATCTTGATACAACTCCCACTCTACAGGGTTCTCTGCAGTAAG
CTGACATGGAGCAGCTGTTGGGCAAGCCGGAGGAAGTGCTGTTACTGCTG
CAGATGCTCATGCCGAATGGCAATGTGCTGCTGGCTAGCAGCAGCTACCT
CCGCCACTGCAAACGGCAGCTGGACACTGCCCTTTCCTCCAAGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig117081:72..417+

>mRNA_M-pyrifera_M_contig117081.3526.1 ID=mRNA_M-pyrifera_M_contig117081.3526.1|Name=mRNA_M-pyrifera_M_contig117081.3526.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=504bp|location=Sequence derived from alignment at M-pyrifera_M_contig117081:72..417+ (Macrocystis pyrifera P11B4 male)
ATGTCGGCAATTGTGGACTCTTTCGAAGCTGTCGACGTCGTCCTTAACAC
ACTGAAGATATTCTCCCGAATTCTCCGCGAGCACTTCAAGAACAACACGC
TCTTCCTCCAACCAAGCGAGATGTCGGCAATTGTGGACTCTTTCGAAGCT
GTCGACGTCGTCCTTAACACACTGAAGATATTCTCCCGAATTCTCCGCGA
GCACTTCAAGAACAACACGCTCTTCCTCCAACCAAGCGAGCTGTTGGGCA
AGCCGGAGGAAGTGCTGTTACTGCTGCAGATGCTCATGCCGAATGGCAAT
GTGCTGCTGGCTAGCAGCAGCTACCTCCGCCACTGCAAACGGCAGCTGGA
CACTGCCCTTTCCTCCAAGTGACTGTTGGGCAAGCCGGAGGAAGTGCTGT
TACTGCTGCAGATGCTCATGCCGAATGGCAATGTGCTGCTGGCTAGCAGC
AGCTACCTCCGCCACTGCAAACGGCAGCTGGACACTGCCCTTTCCTCCAA
GTGA
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