mRNA_M-pyrifera_M_contig117054.3520.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig117054.3520.1
Unique NamemRNA_M-pyrifera_M_contig117054.3520.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig117054.3520.1 vs. uniprot
Match: A0A0P1B8A9_PLAHL (Superoxide dismutase [Fe] n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B8A9_PLAHL)

HSP 1 Score: 100 bits (249), Expect = 4.160e-25
Identity = 48/80 (60.00%), Postives = 58/80 (72.50%), Query Frame = 1
Query:    1 ARASAVGVRSYSKPVLPELPYDYGELEPVISGKIMELHHSKHHATYVNNVNNAITQLEEAEAKGDAAKVASLQQAFRFNG 240
            A   A+G RS S   LP+LPYD+G LEP ISG+IME+HH KHH  YVNN N A+ Q +EAE+KGD AK+  L QA +FNG
Sbjct:   14 ASLRAIGTRSTSSVTLPDLPYDFGALEPSISGQIMEIHHQKHHQAYVNNYNAALEQYDEAESKGDHAKLLGLLQALKFNG 93          
BLAST of mRNA_M-pyrifera_M_contig117054.3520.1 vs. uniprot
Match: UPI000C872F3F (superoxide dismutase [Mn], mitochondrial-like n=1 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI000C872F3F)

HSP 1 Score: 100 bits (248), Expect = 2.640e-24
Identity = 47/76 (61.84%), Postives = 60/76 (78.95%), Query Frame = 1
Query:   13 AVGVRSYSKPVLPELPYDYGELEPVISGKIMELHHSKHHATYVNNVNNAITQLEEAEAKGDAAKVASLQQAFRFNG 240
            A G++++S   LP+LPYDYGELEP ISG+IM++HH KHH TY+ N N A+ QLEEA AKGD++KV  LQ A +FNG
Sbjct:   25 ARGLQTFS---LPDLPYDYGELEPAISGEIMKIHHQKHHQTYITNYNKALEQLEEAMAKGDSSKVVGLQSAIKFNG 97          
BLAST of mRNA_M-pyrifera_M_contig117054.3520.1 vs. uniprot
Match: H9XW29_9ERIC (Manganese superoxide dismutase 9 (Fragment) n=1 Tax=Diospyros oleifera TaxID=227308 RepID=H9XW29_9ERIC)

HSP 1 Score: 96.3 bits (238), Expect = 6.620e-24
Identity = 49/84 (58.33%), Postives = 59/84 (70.24%), Query Frame = 1
Query:    1 ARASAVGVRSYSKPV----LPELPYDYGELEPVISGKIMELHHSKHHATYVNNVNNAITQLEEAEAKGDAAKVASLQQAFRFNG 240
            A+  AVG  ++S+      LP+LPYDYG LEP ISG+IM+LHH KHH TYV N N A+ QL +A AKGDAA V  LQ A +FNG
Sbjct:   43 AKILAVGSTAHSRGFQTFSLPDLPYDYGALEPAISGEIMQLHHQKHHQTYVTNYNKALEQLHDAIAKGDAAAVVKLQSAIKFNG 126          
BLAST of mRNA_M-pyrifera_M_contig117054.3520.1 vs. uniprot
Match: H9XW30_9ERIC (Manganese superoxide dismutase 10 (Fragment) n=2 Tax=Diospyros oleifera TaxID=227308 RepID=H9XW30_9ERIC)

HSP 1 Score: 96.3 bits (238), Expect = 6.800e-24
Identity = 49/84 (58.33%), Postives = 59/84 (70.24%), Query Frame = 1
Query:    1 ARASAVGVRSYSKPV----LPELPYDYGELEPVISGKIMELHHSKHHATYVNNVNNAITQLEEAEAKGDAAKVASLQQAFRFNG 240
            A+  AVG  ++S+      LP+LPYDYG LEP ISG+IM+LHH KHH TYV N N A+ QL +A AKGDAA V  LQ A +FNG
Sbjct:   44 AKILAVGSTAHSRGFQTLSLPDLPYDYGALEPAISGEIMQLHHQKHHQTYVTNYNKALEQLHDAIAKGDAAAVVKLQSAIKFNG 127          
BLAST of mRNA_M-pyrifera_M_contig117054.3520.1 vs. uniprot
Match: A0A4D8XVW6_SALSN (Superoxide dismutase, Fe-Mn family n=1 Tax=Salvia splendens TaxID=180675 RepID=A0A4D8XVW6_SALSN)

HSP 1 Score: 95.5 bits (236), Expect = 1.070e-23
Identity = 45/80 (56.25%), Postives = 59/80 (73.75%), Query Frame = 1
Query:    1 ARASAVGVRSYSKPVLPELPYDYGELEPVISGKIMELHHSKHHATYVNNVNNAITQLEEAEAKGDAAKVASLQQAFRFNG 240
            A  ++ G++++S   LP+LPYDYGELEP IS +IM+LHH KHH TY+ N N A+ QL+ A AKGDA+ V  LQ A +FNG
Sbjct:   16 APVASRGIQTFS---LPDLPYDYGELEPAISAEIMQLHHQKHHQTYITNYNKALEQLDAAAAKGDASTVVKLQSAIKFNG 92          
BLAST of mRNA_M-pyrifera_M_contig117054.3520.1 vs. uniprot
Match: D3J1L2_PENJP (Superoxide dismutase n=10 Tax=Penaeus TaxID=133894 RepID=D3J1L2_PENJP)

HSP 1 Score: 98.2 bits (243), Expect = 1.190e-23
Identity = 49/77 (63.64%), Postives = 57/77 (74.03%), Query Frame = 1
Query:   10 SAVGVRSYSKPVLPELPYDYGELEPVISGKIMELHHSKHHATYVNNVNNAITQLEEAEAKGDAAKVASLQQAFRFNG 240
            +AVGVRS  K  LP+LPYDY  LEPVI  +IM+LHHSKHH TYVNN+N A  +L EA+AKGD   V SL  A +FNG
Sbjct:   15 AAVGVRSQQKHTLPDLPYDYNALEPVICAEIMQLHHSKHHQTYVNNLNVAEEKLAEAQAKGDVNTVISLAPALKFNG 91          
BLAST of mRNA_M-pyrifera_M_contig117054.3520.1 vs. uniprot
Match: A0A3R7SM99_PENVA (Mitochondrial MnSOD (Fragment) n=1 Tax=Penaeus vannamei TaxID=6689 RepID=A0A3R7SM99_PENVA)

HSP 1 Score: 94.7 bits (234), Expect = 1.200e-23
Identity = 47/74 (63.51%), Postives = 54/74 (72.97%), Query Frame = 1
Query:   19 GVRSYSKPVLPELPYDYGELEPVISGKIMELHHSKHHATYVNNVNNAITQLEEAEAKGDAAKVASLQQAFRFNG 240
            GVRS  K  LP+LPYDY  LEPVI  +IM+LHHSKHH TYVNN+N A  +L EA+AKGD   V SL  A +FNG
Sbjct:    5 GVRSQQKHTLPDLPYDYNALEPVICAEIMQLHHSKHHQTYVNNLNVAEEKLAEAQAKGDVNTVISLAPALKFNG 78          
BLAST of mRNA_M-pyrifera_M_contig117054.3520.1 vs. uniprot
Match: A8JAX1_CHLRE (Superoxide dismutase n=3 Tax=Chlamydomonas TaxID=3052 RepID=A8JAX1_CHLRE)

HSP 1 Score: 98.2 bits (243), Expect = 1.240e-23
Identity = 48/72 (66.67%), Postives = 55/72 (76.39%), Query Frame = 1
Query:   25 RSYSKPVLPELPYDYGELEPVISGKIMELHHSKHHATYVNNVNNAITQLEEAEAKGDAAKVASLQQAFRFNG 240
            R+ S   LP+LPY YG LEP ISG+IMELHHSKHHATYV N+N A+ Q  EAE KGD AK+ SLQ A +FNG
Sbjct:   22 RAMSSVKLPDLPYSYGALEPYISGQIMELHHSKHHATYVANLNKALEQQAEAEHKGDVAKLISLQSAIKFNG 93          
BLAST of mRNA_M-pyrifera_M_contig117054.3520.1 vs. uniprot
Match: A0A2G9HSY8_9LAMI (Superoxide dismutase n=1 Tax=Handroanthus impetiginosus TaxID=429701 RepID=A0A2G9HSY8_9LAMI)

HSP 1 Score: 98.2 bits (243), Expect = 1.300e-23
Identity = 46/79 (58.23%), Postives = 57/79 (72.15%), Query Frame = 1
Query:    4 RASAVGVRSYSKPVLPELPYDYGELEPVISGKIMELHHSKHHATYVNNVNNAITQLEEAEAKGDAAKVASLQQAFRFNG 240
            R S++G+R      LP+LPYDYG LEP ISG+IM+LHH KHH TYV N N AI QL+ A +KGDA+ +  LQ A +FNG
Sbjct:   13 RTSSLGLRGLQTFSLPDLPYDYGALEPAISGEIMQLHHQKHHQTYVTNFNKAIEQLDGAASKGDASTIVKLQSAIKFNG 91          
BLAST of mRNA_M-pyrifera_M_contig117054.3520.1 vs. uniprot
Match: A0A446MV64_TRITD (Sod_Fe_N domain-containing protein n=1 Tax=Triticum turgidum subsp. durum TaxID=4567 RepID=A0A446MV64_TRITD)

HSP 1 Score: 94.7 bits (234), Expect = 1.380e-23
Identity = 44/74 (59.46%), Postives = 53/74 (71.62%), Query Frame = 1
Query:   19 GVRSYSKPVLPELPYDYGELEPVISGKIMELHHSKHHATYVNNVNNAITQLEEAEAKGDAAKVASLQQAFRFNG 240
            G R  +   LP+LPYDYG LEP +SG+IM LHH KHHATYV N N A+ QL+ A +KGDA+ V  LQ A +FNG
Sbjct:   18 GARGVATFTLPDLPYDYGALEPAVSGEIMRLHHQKHHATYVANYNKALEQLDAAASKGDASAVVGLQSAIKFNG 91          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig117054.3520.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0P1B8A9_PLAHL4.160e-2560.00Superoxide dismutase [Fe] n=1 Tax=Plasmopara halst... [more]
UPI000C872F3F2.640e-2461.84superoxide dismutase [Mn], mitochondrial-like n=1 ... [more]
H9XW29_9ERIC6.620e-2458.33Manganese superoxide dismutase 9 (Fragment) n=1 Ta... [more]
H9XW30_9ERIC6.800e-2458.33Manganese superoxide dismutase 10 (Fragment) n=2 T... [more]
A0A4D8XVW6_SALSN1.070e-2356.25Superoxide dismutase, Fe-Mn family n=1 Tax=Salvia ... [more]
D3J1L2_PENJP1.190e-2363.64Superoxide dismutase n=10 Tax=Penaeus TaxID=133894... [more]
A0A3R7SM99_PENVA1.200e-2363.51Mitochondrial MnSOD (Fragment) n=1 Tax=Penaeus van... [more]
A8JAX1_CHLRE1.240e-2366.67Superoxide dismutase n=3 Tax=Chlamydomonas TaxID=3... [more]
A0A2G9HSY8_9LAMI1.300e-2358.23Superoxide dismutase n=1 Tax=Handroanthus impetigi... [more]
A0A446MV64_TRITD1.380e-2359.46Sod_Fe_N domain-containing protein n=1 Tax=Triticu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig117054contigM-pyrifera_M_contig117054:56..295 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score99.0
Seed ortholog evalue1.1e-18
Seed eggNOG ortholog3055.EDO98932
Preferred nameMSD
KEGG koko:K04564
KEGG Pathwayko04013,ko04068,ko04146,ko04211,ko04212,ko04213,ko05016,map04013,map04068,map04146,map04211,map04212,map04213,map05016
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000302,GO:0000303,GO:0000305,GO:0001101,GO:0003006,GO:0003674,GO:0003824,GO:0004784,GO:0005488,GO:0005507,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006801,GO:0006950,GO:0006952,GO:0006970,GO:0006979,GO:0007275,GO:0008150,GO:0008152,GO:0009410,GO:0009605,GO:0009607,GO:0009617,GO:0009628,GO:0009635,GO:0009636,GO:0009651,GO:0009719,GO:0009725,GO:0009737,GO:0009790,GO:0009791,GO:0009793,GO:0009838,GO:0009908,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0010043,GO:0010154,GO:0010227,GO:0016043,GO:0016209,GO:0016491,GO:0016721,GO:0019430,GO:0022414,GO:0022607,GO:0030145,GO:0031974,GO:0032501,GO:0032502,GO:0033554,GO:0033993,GO:0034599,GO:0034614,GO:0042221,GO:0042742,GO:0043167,GO:0043169,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046872,GO:0046914,GO:0048316,GO:0048367,GO:0048437,GO:0048608,GO:0048731,GO:0048856,GO:0050896,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0051704,GO:0051707,GO:0051716,GO:0055114,GO:0061458,GO:0065003,GO:0070013,GO:0070887,GO:0071450,GO:0071451,GO:0071840,GO:0072593,GO:0090567,GO:0097237,GO:0097305,GO:0098542,GO:0098754,GO:0098869,GO:0099402,GO:1901700,GO:1901701,GO:1990748
EggNOG free text desc.Destroys radicals which are normally produced within the cells and which are toxic to biological systems
EggNOG OGs34HM7@3041,37MWT@33090,COG0605@1,KOG0876@2759
Ec32 ortholog descriptionSuperoxide dismutase
Ec32 orthologEc-01_007760.1
EC1.15.1.1
COG Functional cat.P
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size240
Cds size240
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815687.4275196-CDS-M-pyrifera_M_contig117054:55..2951622815687.4275196-CDS-M-pyrifera_M_contig117054:55..295Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117054 56..295 -
1692277522.1648214-CDS-M-pyrifera_M_contig117054:55..2951692277522.1648214-CDS-M-pyrifera_M_contig117054:55..295Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117054 56..295 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig117054.3520.1prot_M-pyrifera_M_contig117054.3520.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig117054 56..295 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig117054.3520.1

>prot_M-pyrifera_M_contig117054.3520.1 ID=prot_M-pyrifera_M_contig117054.3520.1|Name=mRNA_M-pyrifera_M_contig117054.3520.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=80bp
ARASAVGVRSYSKPVLPELPYDYGELEPVISGKIMELHHSKHHATYVNNV
NNAITQLEEAEAKGDAAKVASLQQAFRFNG
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mRNA from alignment at M-pyrifera_M_contig117054:56..295-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig117054.3520.1 ID=mRNA_M-pyrifera_M_contig117054.3520.1|Name=mRNA_M-pyrifera_M_contig117054.3520.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=240bp|location=Sequence derived from alignment at M-pyrifera_M_contig117054:56..295- (Macrocystis pyrifera P11B4 male)
GCCCGTGCGTCGGCGGTGGGCGTGAGGAGCTACTCCAAGCCTGTCCTCCC TGAGCTCCCCTACGACTATGGTGAGCTTGAGCCCGTCATCAGCGGCAAGA TCATGGAGCTGCACCACAGCAAGCACCACGCCACTTATGTCAACAACGTC AACAACGCCATCACTCAGCTCGAGGAGGCTGAGGCCAAGGGCGACGCTGC CAAGGTGGCATCCCTCCAGCAGGCCTTCCGCTTCAACGGT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig117054:56..295-

>mRNA_M-pyrifera_M_contig117054.3520.1 ID=mRNA_M-pyrifera_M_contig117054.3520.1|Name=mRNA_M-pyrifera_M_contig117054.3520.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=480bp|location=Sequence derived from alignment at M-pyrifera_M_contig117054:56..295- (Macrocystis pyrifera P11B4 male)
GCCCGTGCGTCGGCGGTGGGCGTGAGGAGCTACTCCAAGCCTGTCCTCCC
TGAGCTCCCCTACGACTATGGTGAGCTTGAGCCCGTCATCAGCGGCAAGA
TCATGGAGCTGCACCACAGCAAGCACCACGCCACTTATGTCAACAACGTC
AACAACGCCATCACTCAGCTCGAGGAGGCTGAGGCCAAGGGCGACGCTGC
CAAGGTGGCATCCCTCCAGCAGGCCTTCCGCTTCAACGGTGCCCGTGCGT
CGGCGGTGGGCGTGAGGAGCTACTCCAAGCCTGTCCTCCCTGAGCTCCCC
TACGACTATGGTGAGCTTGAGCCCGTCATCAGCGGCAAGATCATGGAGCT
GCACCACAGCAAGCACCACGCCACTTATGTCAACAACGTCAACAACGCCA
TCACTCAGCTCGAGGAGGCTGAGGCCAAGGGCGACGCTGCCAAGGTGGCA
TCCCTCCAGCAGGCCTTCCGCTTCAACGGT
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